Wall clock time and date at job start Fri Apr 10 2020 17:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35731 * 116.99846 * 2 1 4 4 C 1.41858 * 126.78660 * 180.30550 * 3 2 1 5 5 C 1.36665 * 103.80925 * 180.11867 * 4 3 2 6 6 C 1.47548 * 126.87539 * 179.87562 * 5 4 3 7 7 O 1.21579 * 119.99624 * 359.70890 * 6 5 4 8 8 N 1.34778 * 119.99826 * 179.71033 * 6 5 4 9 9 C 1.46495 * 119.99718 * 180.02562 * 8 6 5 10 10 H 1.08994 * 109.47210 * 324.99916 * 9 8 6 11 11 C 1.52999 * 109.47389 * 85.00140 * 9 8 6 12 12 C 1.53006 * 109.46696 * 204.99517 * 9 8 6 13 13 C 1.52997 * 109.46841 * 65.00499 * 12 9 8 14 14 H 1.09005 * 109.47159 * 54.99606 * 13 12 9 15 15 C 1.52999 * 109.47264 * 174.99605 * 13 12 9 16 16 N 1.46498 * 109.47167 * 294.99436 * 13 12 9 17 17 C 1.36935 * 120.00239 * 154.99975 * 16 13 12 18 18 H 1.08004 * 120.00069 * 0.02562 * 17 16 13 19 19 C 1.38811 * 120.00368 * 180.02562 * 17 16 13 20 20 N 1.31624 * 119.99540 * 359.72375 * 19 17 16 21 21 Si 1.86800 * 120.00451 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46758 * 269.72270 * 21 19 17 23 23 H 1.48499 * 109.47026 * 29.72118 * 21 19 17 24 24 H 1.48496 * 109.47474 * 149.72153 * 21 19 17 25 25 O 1.34654 * 106.24344 * 359.61059 * 5 4 3 26 26 N 1.20875 * 111.63353 * 0.26507 * 25 5 4 27 27 H 1.09001 * 109.47548 * 299.99733 * 1 2 3 28 28 H 1.08997 * 109.47836 * 59.99726 * 1 2 3 29 29 H 1.09005 * 109.47349 * 180.02562 * 1 2 3 30 30 H 1.07997 * 128.09421 * 359.97438 * 4 3 2 31 31 H 0.96997 * 119.99976 * 359.97438 * 8 6 5 32 32 H 1.09007 * 109.47428 * 59.99518 * 11 9 8 33 33 H 1.09001 * 109.47632 * 179.97438 * 11 9 8 34 34 H 1.09000 * 109.47086 * 299.99744 * 11 9 8 35 35 H 1.08996 * 109.47489 * 304.99916 * 12 9 8 36 36 H 1.09001 * 109.46720 * 184.99882 * 12 9 8 37 37 H 1.08994 * 109.47214 * 179.97438 * 15 13 12 38 38 H 1.08994 * 109.47102 * 299.99987 * 15 13 12 39 39 H 1.09005 * 109.47033 * 59.99923 * 15 13 12 40 40 H 0.97004 * 119.99747 * 335.00715 * 16 13 12 41 41 H 0.97000 * 120.00481 * 0.27542 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0451 1.2094 0.0000 4 6 3.4430 1.4506 -0.0061 5 6 3.5389 2.8138 -0.0005 6 6 4.7784 3.6143 -0.0007 7 8 5.8602 3.0595 -0.0009 8 7 4.7112 4.9604 -0.0006 9 6 5.9419 5.7551 -0.0013 10 1 6.7041 5.2450 0.5876 11 6 6.4376 5.9263 -1.4386 12 6 5.6613 7.1301 0.6085 13 6 5.2857 6.9671 2.0826 14 1 6.0710 6.4146 2.5988 15 6 5.1270 8.3470 2.7241 16 7 4.0226 6.2322 2.1864 17 6 3.7330 5.5255 3.3230 18 1 4.4355 5.5103 4.1432 19 6 2.5364 4.8288 3.4211 20 7 1.6778 4.8518 2.4237 21 14 2.1409 3.8654 4.9718 22 1 2.6450 2.4754 4.8331 23 1 2.7929 4.5143 6.1375 24 1 0.6705 3.8404 5.1777 25 8 2.2757 3.2802 -0.0007 26 7 1.4685 2.3805 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3635 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 4.2441 0.7263 -0.0112 31 1 3.8481 5.4029 -0.0007 32 1 5.6753 6.4363 -2.0276 33 1 7.3531 6.5180 -1.4393 34 1 6.6374 4.9468 -1.8731 35 1 4.8379 7.6035 0.0739 36 1 6.5527 7.7522 0.5273 37 1 4.8589 8.2309 3.7742 38 1 6.0667 8.8938 2.6469 39 1 4.3417 8.8994 2.2080 40 1 3.3915 6.2461 1.4498 41 1 1.8830 5.3524 1.6185 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134134042.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:42:59 Heat of formation + Delta-G solvation = 10.991468 kcal Electronic energy + Delta-G solvation = -25616.998881 eV Core-core repulsion = 21923.011672 eV Total energy + Delta-G solvation = -3693.987208 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.152 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -44.39706 -39.48497 -38.53044 -37.00993 -34.44893 -32.74745 -32.57855 -31.55262 -30.25166 -28.24987 -27.42167 -26.44068 -23.95728 -23.43859 -22.81733 -21.09128 -20.43636 -20.07462 -18.53118 -17.39267 -17.31489 -16.40614 -16.06821 -15.68917 -15.26506 -15.02432 -14.69593 -14.33920 -14.08791 -13.68826 -13.50520 -13.22232 -13.05336 -13.03288 -12.22054 -12.09514 -12.01822 -11.77405 -11.64813 -11.61691 -11.14865 -10.94827 -10.76651 -10.47559 -10.46069 -10.15980 -10.00687 -9.84977 -9.38253 -9.13917 -8.98212 -8.86624 -8.59382 -6.97570 -6.01022 -3.03145 1.31016 2.57979 2.98138 3.07891 3.53165 3.53954 3.56533 3.69632 3.81158 4.54209 4.68566 4.95014 5.16758 5.23757 5.27140 5.32097 5.33370 5.41384 5.53901 5.62801 5.63436 5.65179 5.76824 5.84816 5.89855 6.01767 6.03829 6.15381 6.24190 6.32716 6.43261 6.47646 6.76230 6.85514 7.00711 7.22672 7.76995 7.87292 8.41422 8.63722 8.79356 9.24644 10.09103 10.24552 11.44000 Molecular weight = 297.15amu Principal moments of inertia in cm(-1) A = 0.012502 B = 0.007139 C = 0.005019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.165107 B = 3921.129913 C = 5577.193495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.287 6.287 3 C 0.183 3.817 4 C -0.170 4.170 5 C -0.049 4.049 6 C 0.616 3.384 7 O -0.531 6.531 8 N -0.682 5.682 9 C 0.149 3.851 10 H 0.089 0.911 11 C -0.164 4.164 12 C -0.135 4.135 13 C 0.174 3.826 14 H 0.049 0.951 15 C -0.163 4.163 16 N -0.728 5.728 17 C -0.329 4.329 18 H 0.060 0.940 19 C -0.038 4.038 20 N -0.927 5.927 21 Si 1.070 2.930 22 H -0.299 1.299 23 H -0.296 1.296 24 H -0.290 1.290 25 O 0.159 5.841 26 N -0.368 5.368 27 H 0.062 0.938 28 H 0.056 0.944 29 H 0.101 0.899 30 H 0.181 0.819 31 H 0.406 0.594 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.078 0.922 37 H 0.053 0.947 38 H 0.036 0.964 39 H 0.043 0.957 40 H 0.360 0.640 41 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.672 -1.001 -8.286 9.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.194 6.194 3 C -0.013 4.013 4 C -0.193 4.193 5 C -0.116 4.116 6 C 0.400 3.600 7 O -0.409 6.409 8 N -0.333 5.333 9 C 0.045 3.955 10 H 0.107 0.893 11 C -0.222 4.222 12 C -0.174 4.174 13 C 0.065 3.935 14 H 0.067 0.933 15 C -0.223 4.223 16 N -0.373 5.373 17 C -0.460 4.460 18 H 0.078 0.922 19 C -0.237 4.237 20 N -0.572 5.572 21 Si 0.903 3.097 22 H -0.227 1.227 23 H -0.223 1.223 24 H -0.216 1.216 25 O 0.087 5.913 26 N -0.085 5.085 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.119 0.881 30 H 0.198 0.802 31 H 0.244 0.756 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.072 0.928 38 H 0.055 0.945 39 H 0.063 0.937 40 H 0.195 0.805 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.257 -2.276 -7.348 8.017 hybrid contribution 0.870 0.783 -0.555 1.296 sum 3.127 -1.493 -7.903 8.630 Atomic orbital electron populations 1.23013 0.77190 1.03497 1.02560 1.86133 1.22311 1.20920 1.90057 1.21798 0.90487 0.85882 1.03167 1.21947 0.94236 0.94876 1.08233 1.23908 0.87644 0.93548 1.06456 1.16344 0.84969 0.82137 0.76556 1.90790 1.26819 1.71583 1.51670 1.45883 1.10493 1.04922 1.72022 1.20942 0.86838 0.91710 0.95998 0.89325 1.22222 1.01093 1.02201 0.96691 1.22248 1.01921 0.95237 0.97989 1.20220 0.89971 0.91624 0.91733 0.93259 1.22404 0.99237 0.98804 1.01863 1.42472 1.17586 1.58989 1.18230 1.19936 1.04554 1.26636 0.94867 0.92153 1.25478 0.93145 1.00725 1.04381 1.70927 1.36550 1.44013 1.05731 0.83352 0.75863 0.75775 0.74751 1.22715 1.22340 1.21571 1.85062 1.11164 1.28906 1.66187 1.73999 1.16050 0.96242 1.22165 0.91968 0.92506 0.88112 0.80170 0.75582 0.92557 0.91698 0.92180 0.91645 0.90367 0.92800 0.94511 0.93740 0.80545 0.93521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.73 101.05 1.08 1.52 16 2 O -0.29 -4.85 10.57 -18.90 -0.20 -5.05 16 3 C 0.18 3.51 8.00 -16.72 -0.13 3.38 16 4 C -0.17 -3.17 10.97 -38.77 -0.43 -3.59 16 5 C -0.05 -0.96 7.29 -36.36 -0.26 -1.23 16 6 C 0.62 12.01 7.78 -12.46 -0.10 11.91 16 7 O -0.53 -11.10 16.57 5.30 0.09 -11.01 16 8 N -0.68 -11.80 3.80 -54.85 -0.21 -12.01 16 9 C 0.15 2.24 2.58 -67.93 -0.17 2.06 16 10 H 0.09 1.49 7.58 -51.93 -0.39 1.10 16 11 C -0.16 -1.99 9.48 37.16 0.35 -1.64 16 12 C -0.14 -1.91 4.43 -26.73 -0.12 -2.03 16 13 C 0.17 3.16 2.89 -67.93 -0.20 2.97 16 14 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 15 C -0.16 -2.76 9.49 37.16 0.35 -2.41 16 16 N -0.73 -16.17 3.84 -53.43 -0.21 -16.38 16 17 C -0.33 -8.64 9.93 -15.06 -0.15 -8.79 16 18 H 0.06 1.64 7.83 -52.48 -0.41 1.23 16 19 C -0.04 -1.05 5.50 -17.43 -0.10 -1.14 16 20 N -0.93 -25.97 13.15 55.49 0.73 -25.24 16 21 Si 1.07 26.17 29.92 -169.99 -5.09 21.08 16 22 H -0.30 -7.37 7.11 56.52 0.40 -6.96 16 23 H -0.30 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 O 0.16 3.32 10.27 15.52 0.16 3.48 16 26 N -0.37 -7.64 11.50 30.47 0.35 -7.29 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.18 2.93 8.06 -52.49 -0.42 2.50 16 31 H 0.41 7.15 6.34 -40.82 -0.26 6.89 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.36 8.03 4.54 -40.82 -0.19 7.85 16 41 H 0.25 6.86 6.56 -40.82 -0.27 6.59 16 LS Contribution 348.54 15.07 5.25 5.25 Total: -1.00 -30.86 348.54 -4.79 -35.65 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -5.80 Total: 10.51 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: 0.13 Total: 1.00 kcal Atomic # 7 Polarization: -61.59 SS G_CDS: 0.67 Total: -60.92 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: 0.05 Total: -12.58 kcal Atomic # 14 Polarization: 26.17 SS G_CDS: -5.09 Total: 21.08 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.86 -4.79 -35.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134134042.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.643 kcal (2) G-P(sol) polarization free energy of solvation -30.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds