Wall clock time and date at job start Fri Apr 10 2020 17:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35731 * 116.99846 * 2 1 4 4 C 1.41858 * 126.78660 * 180.30550 * 3 2 1 5 5 C 1.36665 * 103.80925 * 180.11867 * 4 3 2 6 6 C 1.47548 * 126.87539 * 179.87562 * 5 4 3 7 7 O 1.21579 * 119.99624 * 359.70890 * 6 5 4 8 8 N 1.34778 * 119.99826 * 179.71033 * 6 5 4 9 9 C 1.46495 * 119.99718 * 180.02562 * 8 6 5 10 10 H 1.08994 * 109.47210 * 324.99916 * 9 8 6 11 11 C 1.52999 * 109.47389 * 85.00140 * 9 8 6 12 12 C 1.53006 * 109.46696 * 204.99517 * 9 8 6 13 13 C 1.52997 * 109.46841 * 65.00499 * 12 9 8 14 14 H 1.09005 * 109.47159 * 54.99606 * 13 12 9 15 15 C 1.52999 * 109.47264 * 174.99605 * 13 12 9 16 16 N 1.46498 * 109.47167 * 294.99436 * 13 12 9 17 17 C 1.36935 * 120.00239 * 154.99975 * 16 13 12 18 18 H 1.08004 * 120.00069 * 0.02562 * 17 16 13 19 19 C 1.38811 * 120.00368 * 180.02562 * 17 16 13 20 20 N 1.31624 * 119.99540 * 359.72375 * 19 17 16 21 21 Si 1.86800 * 120.00451 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46758 * 269.72270 * 21 19 17 23 23 H 1.48499 * 109.47026 * 29.72118 * 21 19 17 24 24 H 1.48496 * 109.47474 * 149.72153 * 21 19 17 25 25 O 1.34654 * 106.24344 * 359.61059 * 5 4 3 26 26 N 1.20875 * 111.63353 * 0.26507 * 25 5 4 27 27 H 1.09001 * 109.47548 * 299.99733 * 1 2 3 28 28 H 1.08997 * 109.47836 * 59.99726 * 1 2 3 29 29 H 1.09005 * 109.47349 * 180.02562 * 1 2 3 30 30 H 1.07997 * 128.09421 * 359.97438 * 4 3 2 31 31 H 0.96997 * 119.99976 * 359.97438 * 8 6 5 32 32 H 1.09007 * 109.47428 * 59.99518 * 11 9 8 33 33 H 1.09001 * 109.47632 * 179.97438 * 11 9 8 34 34 H 1.09000 * 109.47086 * 299.99744 * 11 9 8 35 35 H 1.08996 * 109.47489 * 304.99916 * 12 9 8 36 36 H 1.09001 * 109.46720 * 184.99882 * 12 9 8 37 37 H 1.08994 * 109.47214 * 179.97438 * 15 13 12 38 38 H 1.08994 * 109.47102 * 299.99987 * 15 13 12 39 39 H 1.09005 * 109.47033 * 59.99923 * 15 13 12 40 40 H 0.97004 * 119.99747 * 335.00715 * 16 13 12 41 41 H 0.97000 * 120.00481 * 0.27542 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0451 1.2094 0.0000 4 6 3.4430 1.4506 -0.0061 5 6 3.5389 2.8138 -0.0005 6 6 4.7784 3.6143 -0.0007 7 8 5.8602 3.0595 -0.0009 8 7 4.7112 4.9604 -0.0006 9 6 5.9419 5.7551 -0.0013 10 1 6.7041 5.2450 0.5876 11 6 6.4376 5.9263 -1.4386 12 6 5.6613 7.1301 0.6085 13 6 5.2857 6.9671 2.0826 14 1 6.0710 6.4146 2.5988 15 6 5.1270 8.3470 2.7241 16 7 4.0226 6.2322 2.1864 17 6 3.7330 5.5255 3.3230 18 1 4.4355 5.5103 4.1432 19 6 2.5364 4.8288 3.4211 20 7 1.6778 4.8518 2.4237 21 14 2.1409 3.8654 4.9718 22 1 2.6450 2.4754 4.8331 23 1 2.7929 4.5143 6.1375 24 1 0.6705 3.8404 5.1777 25 8 2.2757 3.2802 -0.0007 26 7 1.4685 2.3805 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3635 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 4.2441 0.7263 -0.0112 31 1 3.8481 5.4029 -0.0007 32 1 5.6753 6.4363 -2.0276 33 1 7.3531 6.5180 -1.4393 34 1 6.6374 4.9468 -1.8731 35 1 4.8379 7.6035 0.0739 36 1 6.5527 7.7522 0.5273 37 1 4.8589 8.2309 3.7742 38 1 6.0667 8.8938 2.6469 39 1 4.3417 8.8994 2.2080 40 1 3.3915 6.2461 1.4498 41 1 1.8830 5.3524 1.6185 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134134042.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:42:58 Heat of formation + Delta-G solvation = -10.948389 kcal Electronic energy + Delta-G solvation = -25617.950264 eV Core-core repulsion = 21923.011672 eV Total energy + Delta-G solvation = -3694.938592 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.152 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -45.91067 -40.93652 -39.85465 -38.50173 -36.05029 -34.33909 -34.14068 -33.09110 -31.67786 -29.94379 -28.57953 -27.63652 -25.43691 -25.35454 -24.30661 -22.45049 -21.81984 -21.52502 -19.97781 -19.29425 -18.86744 -17.83004 -17.45956 -17.09483 -16.71835 -16.51023 -16.07157 -15.86327 -15.71967 -15.47505 -15.07193 -14.59764 -14.44844 -14.38819 -13.50258 -13.39058 -13.17733 -13.08516 -12.86294 -12.85132 -12.76924 -12.54811 -12.38634 -12.17236 -11.91061 -11.76835 -11.61533 -11.35717 -11.08293 -10.90558 -10.83926 -10.33987 -10.04191 -8.86912 -8.11985 -5.07551 -0.21447 1.08751 1.53767 1.58917 1.60538 1.65931 1.74242 2.03512 2.41167 2.72227 3.10405 3.56618 3.68899 3.77783 3.87751 3.97449 4.10711 4.11474 4.23490 4.32006 4.33390 4.52747 4.56264 4.63811 4.64391 4.81362 4.84424 4.85948 5.03893 5.08026 5.11110 5.35431 5.36845 5.51089 5.60404 5.78722 5.87898 6.31452 6.73500 6.94072 7.11688 7.30191 8.17204 8.29250 9.36094 Molecular weight = 297.15amu Principal moments of inertia in cm(-1) A = 0.012502 B = 0.007139 C = 0.005019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.165107 B = 3921.129913 C = 5577.193495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.290 6.290 3 C 0.185 3.815 4 C -0.170 4.170 5 C -0.062 4.062 6 C 0.612 3.388 7 O -0.552 6.552 8 N -0.675 5.675 9 C 0.144 3.856 10 H 0.068 0.932 11 C -0.154 4.154 12 C -0.121 4.121 13 C 0.166 3.834 14 H 0.031 0.969 15 C -0.153 4.153 16 N -0.733 5.733 17 C -0.322 4.322 18 H 0.046 0.954 19 C -0.082 4.082 20 N -0.945 5.945 21 Si 1.101 2.899 22 H -0.304 1.304 23 H -0.282 1.282 24 H -0.296 1.296 25 O 0.142 5.858 26 N -0.388 5.388 27 H 0.046 0.954 28 H 0.062 0.938 29 H 0.143 0.857 30 H 0.201 0.799 31 H 0.405 0.595 32 H 0.069 0.931 33 H 0.092 0.908 34 H 0.045 0.955 35 H 0.077 0.923 36 H 0.116 0.884 37 H 0.025 0.975 38 H 0.071 0.929 39 H 0.046 0.954 40 H 0.359 0.641 41 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.530 -0.282 -9.096 10.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.197 6.197 3 C -0.012 4.012 4 C -0.193 4.193 5 C -0.129 4.129 6 C 0.395 3.605 7 O -0.431 6.431 8 N -0.325 5.325 9 C 0.041 3.959 10 H 0.087 0.913 11 C -0.212 4.212 12 C -0.159 4.159 13 C 0.058 3.942 14 H 0.049 0.951 15 C -0.213 4.213 16 N -0.378 5.378 17 C -0.455 4.455 18 H 0.064 0.936 19 C -0.278 4.278 20 N -0.592 5.592 21 Si 0.931 3.069 22 H -0.232 1.232 23 H -0.208 1.208 24 H -0.223 1.223 25 O 0.073 5.927 26 N -0.108 5.108 27 H 0.065 0.935 28 H 0.081 0.919 29 H 0.161 0.839 30 H 0.218 0.782 31 H 0.243 0.757 32 H 0.088 0.912 33 H 0.111 0.889 34 H 0.064 0.936 35 H 0.096 0.904 36 H 0.134 0.866 37 H 0.044 0.956 38 H 0.090 0.910 39 H 0.065 0.935 40 H 0.194 0.806 41 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 3.154 -1.500 -8.160 8.876 hybrid contribution 0.627 0.559 -0.294 0.890 sum 3.781 -0.941 -8.454 9.309 Atomic orbital electron populations 1.23327 0.75242 1.06141 1.02080 1.86156 1.24214 1.19626 1.89689 1.22022 0.90843 0.86266 1.02076 1.22295 0.94729 0.94916 1.07381 1.24165 0.87606 0.94274 1.06807 1.16410 0.84582 0.82802 0.76707 1.90766 1.27285 1.72023 1.53065 1.45992 1.11340 1.04407 1.70717 1.21163 0.85334 0.91527 0.97901 0.91342 1.22135 1.02644 1.02109 0.94276 1.22172 1.03972 0.95194 0.94609 1.20454 0.87589 0.91460 0.94726 0.95096 1.22261 1.01125 0.98172 0.99770 1.42533 1.19055 1.59149 1.17024 1.20012 1.03752 1.26094 0.95614 0.93581 1.26209 0.93780 1.02041 1.05780 1.70971 1.37090 1.45079 1.06088 0.82918 0.75247 0.74922 0.73782 1.23225 1.20772 1.22312 1.85025 1.11500 1.29233 1.66913 1.73958 1.16543 0.96846 1.23483 0.93475 0.91941 0.83920 0.78160 0.75747 0.91191 0.88924 0.93618 0.90433 0.86581 0.95616 0.90990 0.93505 0.80621 0.93762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 10.73 113.37 1.22 1.88 16 2 O -0.29 -9.54 10.57 -90.54 -0.96 -10.49 16 3 C 0.18 7.07 8.00 85.78 0.69 7.76 16 4 C -0.17 -6.36 10.97 22.80 0.25 -6.11 16 5 C -0.06 -2.48 7.29 24.36 0.18 -2.31 16 6 C 0.61 23.99 7.78 86.70 0.67 24.67 16 7 O -0.55 -23.19 16.57 -3.97 -0.07 -23.25 16 8 N -0.67 -23.09 3.80 -445.70 -1.69 -24.78 16 9 C 0.14 4.07 2.58 44.99 0.12 4.19 16 10 H 0.07 2.24 7.58 -2.39 -0.02 2.22 16 11 C -0.15 -3.32 9.48 71.98 0.68 -2.64 16 12 C -0.12 -3.05 4.43 30.60 0.14 -2.92 16 13 C 0.17 5.79 2.89 44.99 0.13 5.92 16 14 H 0.03 1.20 8.08 -2.38 -0.02 1.18 16 15 C -0.15 -4.88 9.49 71.98 0.68 -4.19 16 16 N -0.73 -32.37 3.84 -322.94 -1.24 -33.61 16 17 C -0.32 -17.06 9.93 84.03 0.83 -16.23 16 18 H 0.05 2.54 7.83 -2.91 -0.02 2.51 16 19 C -0.08 -4.54 5.50 84.86 0.47 -4.07 16 20 N -0.95 -53.54 13.15 21.65 0.28 -53.26 16 21 Si 1.10 53.39 29.92 68.60 2.05 55.44 16 22 H -0.30 -14.84 7.11 99.48 0.71 -14.13 16 23 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 24 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 25 O 0.14 6.08 10.27 65.72 0.67 6.76 16 26 N -0.39 -16.35 11.50 -172.00 -1.98 -18.32 16 27 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.14 2.37 8.14 -2.38 -0.02 2.35 16 30 H 0.20 6.41 8.06 -2.91 -0.02 6.38 16 31 H 0.40 14.18 6.34 -92.71 -0.59 13.59 16 32 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 33 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 40 H 0.36 15.98 4.54 -92.71 -0.42 15.56 16 41 H 0.25 13.80 6.56 -92.71 -0.61 13.19 16 Total: -1.00 -67.29 348.54 3.34 -63.96 By element: Atomic # 1 Polarization: 31.41 SS G_CDS: 0.21 Total: 31.61 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: 6.05 Total: 5.95 kcal Atomic # 7 Polarization: -125.34 SS G_CDS: -4.63 Total: -129.97 kcal Atomic # 8 Polarization: -26.64 SS G_CDS: -0.35 Total: -26.99 kcal Atomic # 14 Polarization: 53.39 SS G_CDS: 2.05 Total: 55.44 kcal Total: -67.29 3.34 -63.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134134042.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.007 kcal (2) G-P(sol) polarization free energy of solvation -67.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds