Wall clock time and date at job start Fri Apr 10 2020 17:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.46511 * 2 1 4 4 C 1.53003 * 109.47051 * 119.99772 * 2 1 3 5 5 C 1.52996 * 109.46721 * 185.00159 * 4 2 1 6 6 H 1.09003 * 109.47587 * 305.00060 * 5 4 2 7 7 C 1.53003 * 109.47135 * 185.00601 * 5 4 2 8 8 N 1.46500 * 109.47234 * 65.00416 * 5 4 2 9 9 C 1.34782 * 119.99979 * 204.99848 * 8 5 4 10 10 O 1.21283 * 119.99955 * 359.97438 * 9 8 5 11 11 C 1.50693 * 119.99642 * 180.02562 * 9 8 5 12 12 N 1.46505 * 109.47069 * 179.97438 * 11 9 8 13 13 C 1.36596 * 127.12086 * 265.02444 * 12 11 9 14 14 N 1.30338 * 107.28065 * 179.97438 * 13 12 11 15 15 N 1.28534 * 109.99250 * 359.97438 * 14 13 12 16 16 C 1.31034 * 109.86009 * 0.02562 * 15 14 13 17 17 O 1.35534 * 126.44360 * 179.97438 * 16 15 14 18 18 N 1.46499 * 109.47256 * 240.00233 * 2 1 3 19 19 C 1.36934 * 120.00142 * 84.99812 * 18 2 1 20 20 H 1.08005 * 119.99761 * 359.97438 * 19 18 2 21 21 C 1.38806 * 120.00074 * 180.02562 * 19 18 2 22 22 N 1.31616 * 120.00202 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99974 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47386 * 59.99811 * 23 21 19 25 25 H 1.48498 * 109.47472 * 179.97438 * 23 21 19 26 26 H 1.48505 * 109.47169 * 299.99616 * 23 21 19 27 27 H 1.09005 * 109.47132 * 299.99599 * 1 2 3 28 28 H 1.08996 * 109.47165 * 60.00278 * 1 2 3 29 29 H 1.09006 * 109.46300 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46884 * 65.00367 * 4 2 1 31 31 H 1.08995 * 109.47254 * 305.00114 * 4 2 1 32 32 H 1.08996 * 109.47544 * 180.02562 * 7 5 4 33 33 H 1.09011 * 109.46774 * 300.00156 * 7 5 4 34 34 H 1.08996 * 109.47388 * 59.99718 * 7 5 4 35 35 H 0.96998 * 120.00075 * 25.00155 * 8 5 4 36 36 H 1.08995 * 109.47747 * 60.00241 * 11 9 8 37 37 H 1.08995 * 109.47504 * 299.99521 * 11 9 8 38 38 H 1.07995 * 126.36031 * 359.97438 * 13 12 11 39 39 H 0.96696 * 113.99864 * 90.02635 * 17 16 15 40 40 H 0.96996 * 119.99670 * 265.00205 * 18 2 1 41 41 H 0.97002 * 120.00088 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3137 6 1 3.9955 -0.9921 0.3868 7 6 4.0853 -1.4382 2.4924 8 7 3.9479 0.7895 1.4925 9 6 5.1612 1.2137 1.0867 10 8 5.9360 0.4341 0.5740 11 6 5.5554 2.6564 1.2712 12 7 6.9104 2.8624 0.7538 13 6 8.0772 2.8329 1.4635 14 7 9.0470 3.0638 0.6239 15 7 8.5731 3.2350 -0.5586 16 6 7.2679 3.1223 -0.5358 17 8 6.4308 3.2418 -1.5950 18 7 2.0184 -0.6905 -1.1962 19 6 2.1492 -0.0074 -2.3757 20 1 1.8919 1.0404 -2.4243 21 6 2.6114 -0.6619 -3.5092 22 7 2.9245 -1.9389 -3.4502 23 14 2.7905 0.2702 -5.1181 24 1 3.7465 1.3920 -4.9366 25 1 3.2994 -0.6481 -6.1683 26 1 1.4684 0.8080 -5.5285 27 1 -0.3634 0.5138 0.8901 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0278 -0.0005 30 1 1.7517 -1.7715 1.2056 31 1 1.6055 -0.2617 2.1370 32 1 5.1715 -1.3609 2.5386 33 1 3.6546 -1.0593 3.4194 34 1 3.8003 -2.4818 2.3594 35 1 3.3284 1.4129 1.9029 36 1 5.5298 2.9075 2.3315 37 1 4.8583 3.2957 0.7295 38 1 8.1774 2.6519 2.5234 39 1 6.2597 2.4097 -2.0569 40 1 2.2491 -1.6317 -1.1526 41 1 3.2472 -2.3963 -4.2424 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134134980.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:43:12 Heat of formation + Delta-G solvation = 19.341992 kcal Electronic energy + Delta-G solvation = -24888.346071 eV Core-core repulsion = 21227.013720 eV Total energy + Delta-G solvation = -3661.332351 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.159 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.03696 -39.87616 -37.54161 -37.10178 -34.92679 -34.58279 -32.33713 -31.12198 -29.83765 -28.72929 -28.22463 -26.45056 -23.72774 -22.87612 -22.40335 -21.52630 -20.63651 -19.87487 -18.85101 -17.77236 -17.28220 -17.01275 -16.15507 -15.90545 -15.42739 -15.14769 -14.72007 -14.42597 -14.07145 -13.83551 -13.77721 -13.29424 -12.91670 -12.63465 -12.36066 -12.25455 -12.14602 -11.85411 -11.75855 -11.65832 -11.17919 -10.90838 -10.88185 -10.70861 -10.57415 -10.34355 -10.27912 -10.02243 -9.74171 -9.70061 -9.18621 -9.01479 -8.95916 -7.01867 -5.81320 -3.10346 1.45805 2.07578 2.46669 2.74836 3.09584 3.39429 3.44752 3.46765 3.82939 4.27884 4.41857 4.50944 4.54456 4.68089 4.96565 5.18988 5.23873 5.33978 5.51390 5.53421 5.56890 5.74013 5.78565 5.83780 5.89074 5.99129 6.16525 6.19256 6.30335 6.40716 6.43386 6.50210 6.62639 6.77735 6.96535 7.33709 7.44035 7.62678 8.12855 8.36657 8.62593 9.47947 10.04716 10.38651 11.40984 Molecular weight = 297.16amu Principal moments of inertia in cm(-1) A = 0.011604 B = 0.005724 C = 0.004270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2412.402433 B = 4890.479006 C = 6556.139423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.172 3.828 3 H 0.044 0.956 4 C -0.131 4.131 5 C 0.144 3.856 6 H 0.107 0.893 7 C -0.161 4.161 8 N -0.708 5.708 9 C 0.497 3.503 10 O -0.518 6.518 11 C 0.086 3.914 12 N -0.472 5.472 13 C 0.168 3.832 14 N -0.284 5.284 15 N -0.290 5.290 16 C 0.372 3.628 17 O -0.441 6.441 18 N -0.721 5.721 19 C -0.240 4.240 20 H 0.066 0.934 21 C -0.010 4.010 22 N -0.930 5.930 23 Si 0.902 3.098 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.287 1.287 27 H 0.034 0.966 28 H 0.052 0.948 29 H 0.046 0.954 30 H 0.077 0.923 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.051 0.949 34 H 0.066 0.934 35 H 0.397 0.603 36 H 0.128 0.872 37 H 0.128 0.872 38 H 0.223 0.777 39 H 0.418 0.582 40 H 0.383 0.617 41 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.171 7.518 16.598 18.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.062 3.938 3 H 0.062 0.938 4 C -0.170 4.170 5 C 0.041 3.959 6 H 0.125 0.875 7 C -0.219 4.219 8 N -0.359 5.359 9 C 0.280 3.720 10 O -0.393 6.393 11 C -0.041 4.041 12 N -0.175 5.175 13 C -0.119 4.119 14 N -0.124 5.124 15 N -0.140 5.140 16 C 0.067 3.933 17 O -0.242 6.242 18 N -0.363 5.363 19 C -0.371 4.371 20 H 0.084 0.916 21 C -0.206 4.206 22 N -0.578 5.578 23 Si 0.733 3.267 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.214 1.214 27 H 0.053 0.947 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.096 0.904 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.231 0.769 36 H 0.145 0.855 37 H 0.146 0.854 38 H 0.239 0.761 39 H 0.278 0.722 40 H 0.216 0.784 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.029 7.849 15.533 17.521 hybrid contribution -1.852 -0.333 -0.419 1.928 sum 0.177 7.517 15.113 16.880 Atomic orbital electron populations 1.22467 0.99476 1.00892 0.99813 1.20215 0.91656 0.95373 0.86554 0.93779 1.22181 0.93390 1.02480 0.98942 1.21099 0.95370 0.79415 1.00044 0.87540 1.22181 1.01428 1.00409 0.97916 1.45892 1.15763 1.12180 1.62082 1.20445 0.82944 0.89407 0.79236 1.90825 1.50798 1.55700 1.42005 1.21753 0.82269 0.96835 1.03251 1.46422 1.08344 1.53431 1.09347 1.26255 0.80317 1.04494 1.00790 1.74183 1.25287 1.17118 0.95851 1.74627 1.03231 1.21475 1.14659 1.22201 0.88465 1.01733 0.80904 1.84803 1.63245 1.37680 1.38446 1.42396 1.78027 1.10575 1.05260 1.19083 1.36960 0.93656 0.87386 0.91567 1.24704 1.02062 0.95905 0.97933 1.69629 1.50526 1.08625 1.29004 0.86358 0.77757 0.78704 0.83864 1.21225 1.21687 1.21365 0.94702 0.92865 0.93491 0.90439 0.91927 0.92591 0.93003 0.91507 0.76936 0.85459 0.85421 0.76090 0.72230 0.78351 0.93420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.65 9.49 37.16 0.35 -2.30 16 2 C 0.17 2.91 2.84 -67.93 -0.19 2.72 16 3 H 0.04 0.74 7.56 -51.93 -0.39 0.35 16 4 C -0.13 -1.72 4.29 -26.73 -0.11 -1.83 16 5 C 0.14 1.98 2.52 -67.93 -0.17 1.81 16 6 H 0.11 2.04 7.06 -51.93 -0.37 1.67 16 7 C -0.16 -1.88 9.48 37.16 0.35 -1.52 16 8 N -0.71 -7.82 4.45 -53.81 -0.24 -8.06 16 9 C 0.50 6.33 7.86 -10.99 -0.09 6.24 16 10 O -0.52 -9.40 16.09 5.55 0.09 -9.31 16 11 C 0.09 0.75 6.69 -5.19 -0.03 0.72 16 12 N -0.47 -5.82 2.29 -121.05 -0.28 -6.09 16 13 C 0.17 1.98 12.80 -89.07 -1.14 0.84 16 14 N -0.28 -4.50 12.18 29.87 0.36 -4.14 16 15 N -0.29 -5.10 12.22 29.65 0.36 -4.74 16 16 C 0.37 5.81 9.22 -88.76 -0.82 4.99 16 17 O -0.44 -6.56 13.62 -18.30 -0.25 -6.81 16 18 N -0.72 -16.41 4.49 -53.42 -0.24 -16.65 16 19 C -0.24 -6.25 9.93 -15.06 -0.15 -6.40 16 20 H 0.07 1.69 7.83 -52.48 -0.41 1.28 16 21 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 22 N -0.93 -27.41 13.06 55.49 0.72 -26.69 16 23 Si 0.90 21.99 29.55 -169.99 -5.02 16.97 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 26 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 27 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.05 0.49 8.14 -51.92 -0.42 0.06 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.40 3.00 8.60 -40.82 -0.35 2.65 16 36 H 0.13 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.13 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.22 1.44 8.06 -52.49 -0.42 1.02 16 39 H 0.42 5.50 9.06 45.56 0.41 5.92 16 40 H 0.38 9.51 7.80 -40.82 -0.32 9.19 16 41 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 355.59 15.07 5.36 5.36 Total: -1.00 -36.36 355.59 -6.44 -42.80 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: -5.21 Total: 12.48 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: -2.10 Total: 4.89 kcal Atomic # 7 Polarization: -67.07 SS G_CDS: 0.69 Total: -66.37 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: -0.16 Total: -16.13 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -36.36 -6.44 -42.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134134980.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.144 kcal (2) G-P(sol) polarization free energy of solvation -36.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds