Wall clock time and date at job start Fri Apr 10 2020 17:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.46511 * 2 1 4 4 C 1.53003 * 109.47051 * 119.99772 * 2 1 3 5 5 C 1.52996 * 109.46721 * 185.00159 * 4 2 1 6 6 H 1.09003 * 109.47587 * 305.00060 * 5 4 2 7 7 C 1.53003 * 109.47135 * 185.00601 * 5 4 2 8 8 N 1.46500 * 109.47234 * 65.00416 * 5 4 2 9 9 C 1.34782 * 119.99979 * 204.99848 * 8 5 4 10 10 O 1.21283 * 119.99955 * 359.97438 * 9 8 5 11 11 C 1.50693 * 119.99642 * 180.02562 * 9 8 5 12 12 N 1.46505 * 109.47069 * 179.97438 * 11 9 8 13 13 C 1.36596 * 127.12086 * 265.02444 * 12 11 9 14 14 N 1.30338 * 107.28065 * 179.97438 * 13 12 11 15 15 N 1.28534 * 109.99250 * 359.97438 * 14 13 12 16 16 C 1.31034 * 109.86009 * 0.02562 * 15 14 13 17 17 O 1.35534 * 126.44360 * 179.97438 * 16 15 14 18 18 N 1.46499 * 109.47256 * 240.00233 * 2 1 3 19 19 C 1.36934 * 120.00142 * 84.99812 * 18 2 1 20 20 H 1.08005 * 119.99761 * 359.97438 * 19 18 2 21 21 C 1.38806 * 120.00074 * 180.02562 * 19 18 2 22 22 N 1.31616 * 120.00202 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99974 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47386 * 59.99811 * 23 21 19 25 25 H 1.48498 * 109.47472 * 179.97438 * 23 21 19 26 26 H 1.48505 * 109.47169 * 299.99616 * 23 21 19 27 27 H 1.09005 * 109.47132 * 299.99599 * 1 2 3 28 28 H 1.08996 * 109.47165 * 60.00278 * 1 2 3 29 29 H 1.09006 * 109.46300 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46884 * 65.00367 * 4 2 1 31 31 H 1.08995 * 109.47254 * 305.00114 * 4 2 1 32 32 H 1.08996 * 109.47544 * 180.02562 * 7 5 4 33 33 H 1.09011 * 109.46774 * 300.00156 * 7 5 4 34 34 H 1.08996 * 109.47388 * 59.99718 * 7 5 4 35 35 H 0.96998 * 120.00075 * 25.00155 * 8 5 4 36 36 H 1.08995 * 109.47747 * 60.00241 * 11 9 8 37 37 H 1.08995 * 109.47504 * 299.99521 * 11 9 8 38 38 H 1.07995 * 126.36031 * 359.97438 * 13 12 11 39 39 H 0.96696 * 113.99864 * 90.02635 * 17 16 15 40 40 H 0.96996 * 119.99670 * 265.00205 * 18 2 1 41 41 H 0.97002 * 120.00088 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3137 6 1 3.9955 -0.9921 0.3868 7 6 4.0853 -1.4382 2.4924 8 7 3.9479 0.7895 1.4925 9 6 5.1612 1.2137 1.0867 10 8 5.9360 0.4341 0.5740 11 6 5.5554 2.6564 1.2712 12 7 6.9104 2.8624 0.7538 13 6 8.0772 2.8329 1.4635 14 7 9.0470 3.0638 0.6239 15 7 8.5731 3.2350 -0.5586 16 6 7.2679 3.1223 -0.5358 17 8 6.4308 3.2418 -1.5950 18 7 2.0184 -0.6905 -1.1962 19 6 2.1492 -0.0074 -2.3757 20 1 1.8919 1.0404 -2.4243 21 6 2.6114 -0.6619 -3.5092 22 7 2.9245 -1.9389 -3.4502 23 14 2.7905 0.2702 -5.1181 24 1 3.7465 1.3920 -4.9366 25 1 3.2994 -0.6481 -6.1683 26 1 1.4684 0.8080 -5.5285 27 1 -0.3634 0.5138 0.8901 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0278 -0.0005 30 1 1.7517 -1.7715 1.2056 31 1 1.6055 -0.2617 2.1370 32 1 5.1715 -1.3609 2.5386 33 1 3.6546 -1.0593 3.4194 34 1 3.8003 -2.4818 2.3594 35 1 3.3284 1.4129 1.9029 36 1 5.5298 2.9075 2.3315 37 1 4.8583 3.2957 0.7295 38 1 8.1774 2.6519 2.5234 39 1 6.2597 2.4097 -2.0569 40 1 2.2491 -1.6317 -1.1526 41 1 3.2472 -2.3963 -4.2424 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134134980.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:43:11 Heat of formation + Delta-G solvation = -10.716973 kcal Electronic energy + Delta-G solvation = -24889.649526 eV Core-core repulsion = 21227.013720 eV Total energy + Delta-G solvation = -3662.635806 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.159 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -44.07424 -40.92262 -38.66912 -38.37857 -36.18110 -35.75833 -34.03943 -32.31044 -30.92059 -30.43935 -29.10216 -27.57875 -25.65888 -23.91239 -23.46847 -22.58685 -21.73786 -21.19111 -19.93341 -19.27792 -18.59631 -18.07399 -17.27531 -16.87238 -16.71630 -16.32367 -16.02621 -15.65673 -15.49071 -15.40202 -14.83208 -14.49741 -14.32661 -13.64983 -13.52433 -13.43977 -13.31805 -13.13898 -12.94129 -12.78619 -12.76116 -12.66447 -12.27322 -12.22458 -11.95447 -11.81612 -11.54959 -11.41136 -11.33874 -10.91033 -10.76386 -10.29519 -10.04671 -8.94798 -7.92299 -5.17342 0.43764 1.17623 1.44432 1.45149 1.51171 1.52111 1.68463 2.17561 2.55777 2.80962 3.42869 3.58159 3.62734 3.75572 3.85153 4.03113 4.11003 4.14720 4.21693 4.41632 4.55928 4.63017 4.69842 4.79295 4.81364 4.84332 4.95940 5.05064 5.12397 5.23358 5.36327 5.42765 5.51349 5.53227 5.62647 5.65847 6.26275 6.30617 6.54999 7.25541 7.36870 7.55502 8.18136 8.36519 9.31227 Molecular weight = 297.16amu Principal moments of inertia in cm(-1) A = 0.011604 B = 0.005724 C = 0.004270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2412.402433 B = 4890.479006 C = 6556.139423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.164 3.836 3 H 0.050 0.950 4 C -0.118 4.118 5 C 0.149 3.851 6 H 0.044 0.956 7 C -0.151 4.151 8 N -0.692 5.692 9 C 0.492 3.508 10 O -0.582 6.582 11 C 0.091 3.909 12 N -0.469 5.469 13 C 0.193 3.807 14 N -0.329 5.329 15 N -0.333 5.333 16 C 0.353 3.647 17 O -0.447 6.447 18 N -0.732 5.732 19 C -0.222 4.222 20 H 0.073 0.927 21 C -0.076 4.076 22 N -0.970 5.970 23 Si 0.956 3.044 24 H -0.278 1.278 25 H -0.304 1.304 26 H -0.279 1.279 27 H 0.078 0.922 28 H 0.027 0.973 29 H 0.037 0.963 30 H 0.070 0.930 31 H 0.111 0.889 32 H 0.037 0.963 33 H 0.087 0.913 34 H 0.063 0.937 35 H 0.419 0.581 36 H 0.189 0.811 37 H 0.145 0.855 38 H 0.276 0.724 39 H 0.420 0.580 40 H 0.368 0.632 41 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.542 9.460 20.119 22.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.056 3.944 3 H 0.068 0.932 4 C -0.156 4.156 5 C 0.044 3.956 6 H 0.062 0.938 7 C -0.209 4.209 8 N -0.345 5.345 9 C 0.277 3.723 10 O -0.461 6.461 11 C -0.034 4.034 12 N -0.172 5.172 13 C -0.094 4.094 14 N -0.168 5.168 15 N -0.183 5.183 16 C 0.047 3.953 17 O -0.248 6.248 18 N -0.372 5.372 19 C -0.354 4.354 20 H 0.091 0.909 21 C -0.268 4.268 22 N -0.621 5.621 23 Si 0.787 3.213 24 H -0.204 1.204 25 H -0.231 1.231 26 H -0.206 1.206 27 H 0.097 0.903 28 H 0.047 0.953 29 H 0.057 0.943 30 H 0.089 0.911 31 H 0.129 0.871 32 H 0.057 0.943 33 H 0.106 0.894 34 H 0.082 0.918 35 H 0.257 0.743 36 H 0.206 0.794 37 H 0.163 0.837 38 H 0.291 0.709 39 H 0.280 0.720 40 H 0.200 0.800 41 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 0.245 9.868 19.119 21.517 hybrid contribution -1.397 -0.921 -1.366 2.160 sum -1.152 8.947 17.752 19.913 Atomic orbital electron populations 1.22336 0.98082 1.00663 1.00750 1.20549 0.92399 0.95534 0.85937 0.93152 1.22081 0.92767 1.02118 0.98673 1.20797 0.95500 0.81048 0.98255 0.93766 1.22072 1.00364 1.00086 0.98374 1.45711 1.15791 1.11599 1.61407 1.21168 0.82534 0.90704 0.77861 1.90818 1.52694 1.57806 1.44799 1.22120 0.80609 0.93729 1.06931 1.46568 1.09909 1.52562 1.08122 1.27323 0.79155 1.00723 1.02214 1.74082 1.27086 1.19622 0.96054 1.74490 1.04736 1.22889 1.16191 1.22297 0.88346 1.02548 0.82146 1.84764 1.63124 1.38062 1.38879 1.42635 1.78157 1.10083 1.06365 1.19458 1.33746 0.93851 0.88354 0.90899 1.25376 1.03780 0.96670 1.00990 1.69786 1.53176 1.10174 1.29006 0.85464 0.77907 0.77490 0.80485 1.20432 1.23076 1.20569 0.90291 0.95343 0.94337 0.91100 0.87064 0.94333 0.89439 0.91844 0.74295 0.79392 0.83736 0.70856 0.71996 0.80035 0.94538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.60 9.49 71.98 0.68 -3.92 16 2 C 0.16 5.17 2.84 45.00 0.13 5.30 16 3 H 0.05 1.54 7.56 -2.39 -0.02 1.52 16 4 C -0.12 -2.73 4.29 30.59 0.13 -2.59 16 5 C 0.15 3.84 2.52 44.99 0.11 3.95 16 6 H 0.04 1.74 7.06 -2.39 -0.02 1.73 16 7 C -0.15 -3.18 9.48 71.98 0.68 -2.50 16 8 N -0.69 -13.14 4.45 -442.53 -1.97 -15.10 16 9 C 0.49 11.48 7.86 87.65 0.69 12.17 16 10 O -0.58 -21.27 16.09 -3.04 -0.05 -21.31 16 11 C 0.09 1.23 6.69 85.63 0.57 1.80 16 12 N -0.47 -10.53 2.29 -647.68 -1.48 -12.01 16 13 C 0.19 4.06 12.80 179.81 2.30 6.36 16 14 N -0.33 -10.29 12.18 -59.41 -0.72 -11.01 16 15 N -0.33 -11.98 12.22 -173.67 -2.12 -14.10 16 16 C 0.35 11.01 9.22 179.70 1.66 12.67 16 17 O -0.45 -13.52 13.62 -88.38 -1.20 -14.73 16 18 N -0.73 -33.52 4.49 -322.93 -1.45 -34.97 16 19 C -0.22 -11.63 9.93 84.03 0.83 -10.80 16 20 H 0.07 3.66 7.83 -2.91 -0.02 3.64 16 21 C -0.08 -4.31 5.50 84.86 0.47 -3.84 16 22 N -0.97 -59.48 13.06 21.65 0.28 -59.20 16 23 Si 0.96 46.23 29.55 68.60 2.03 48.26 16 24 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 25 H -0.30 -15.22 7.11 99.48 0.71 -14.51 16 26 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 27 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 28 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.04 1.17 8.14 -2.38 -0.02 1.15 16 30 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 34 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.42 4.16 8.60 -92.71 -0.80 3.36 16 36 H 0.19 0.26 8.14 -2.39 -0.02 0.24 16 37 H 0.14 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.28 2.23 8.06 -2.91 -0.02 2.21 16 39 H 0.42 11.70 9.06 -74.06 -0.67 11.02 16 40 H 0.37 18.88 7.80 -92.71 -0.72 18.16 16 41 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 Total: -1.00 -86.96 355.59 0.45 -86.50 By element: Atomic # 1 Polarization: 30.20 SS G_CDS: -1.12 Total: 29.08 kcal Atomic # 6 Polarization: 10.34 SS G_CDS: 8.26 Total: 18.60 kcal Atomic # 7 Polarization: -138.93 SS G_CDS: -7.47 Total: -146.40 kcal Atomic # 8 Polarization: -34.79 SS G_CDS: -1.25 Total: -36.04 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Total: -86.96 0.45 -86.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134134980.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.786 kcal (2) G-P(sol) polarization free energy of solvation -86.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds