Wall clock time and date at job start Fri Apr 10 2020 17:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47373 * 2 1 4 4 C 1.53008 * 109.46579 * 240.00596 * 2 1 3 5 5 C 1.53004 * 109.47003 * 65.78468 * 4 2 1 6 6 H 1.08991 * 109.47081 * 304.55508 * 5 4 2 7 7 C 1.52998 * 109.46738 * 184.55181 * 5 4 2 8 8 N 1.46500 * 109.46832 * 64.55537 * 5 4 2 9 9 C 1.34779 * 119.99738 * 205.94616 * 8 5 4 10 10 O 1.21495 * 120.00217 * 5.05353 * 9 8 5 11 11 C 1.48205 * 119.99918 * 185.05300 * 9 8 5 12 12 C 1.36317 * 126.38487 * 184.87874 * 11 9 8 13 13 C 1.42339 * 104.01056 * 179.97438 * 12 11 9 14 14 O 1.21973 * 127.15251 * 180.13723 * 13 12 11 15 15 N 1.34840 * 105.70192 * 0.33026 * 13 12 11 16 16 C 1.46495 * 124.56776 * 179.82371 * 15 13 12 17 17 O 1.20919 * 110.86213 * 359.78752 * 15 13 12 18 18 N 1.46498 * 109.47356 * 120.01114 * 2 1 3 19 19 C 1.36939 * 119.99329 * 273.85362 * 18 2 1 20 20 H 1.07997 * 120.00419 * 4.67440 * 19 18 2 21 21 C 1.38814 * 119.99776 * 184.39727 * 19 18 2 22 22 N 1.31611 * 120.00190 * 174.00297 * 21 19 18 23 23 Si 1.86799 * 119.99717 * 354.00747 * 21 19 18 24 24 H 1.48495 * 109.47467 * 93.63869 * 23 21 19 25 25 H 1.48507 * 109.46948 * 213.63716 * 23 21 19 26 26 H 1.48497 * 109.47286 * 333.63443 * 23 21 19 27 27 H 1.08996 * 109.47373 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46881 * 299.99450 * 1 2 3 29 29 H 1.08993 * 109.47581 * 59.98844 * 1 2 3 30 30 H 1.08999 * 109.46830 * 185.78389 * 4 2 1 31 31 H 1.09003 * 109.47139 * 305.78603 * 4 2 1 32 32 H 1.09005 * 109.46932 * 179.97438 * 7 5 4 33 33 H 1.09004 * 109.47429 * 300.00099 * 7 5 4 34 34 H 1.09004 * 109.47088 * 60.00640 * 7 5 4 35 35 H 0.96998 * 120.00143 * 25.95010 * 8 5 4 36 36 H 1.07999 * 127.99189 * 0.02562 * 12 11 9 37 37 H 1.09000 * 109.47255 * 179.97438 * 16 15 13 38 38 H 1.09001 * 109.47132 * 299.98275 * 16 15 13 39 39 H 1.09001 * 109.46978 * 59.98155 * 16 15 13 40 40 H 0.96990 * 120.00369 * 93.85883 * 18 2 1 41 41 H 0.97002 * 120.00297 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 1.6520 0.0793 -2.4943 6 1 0.5739 0.2393 -2.5020 7 6 2.0614 -0.6968 -3.7476 8 7 2.3377 1.3737 -2.4758 9 6 1.8042 2.4283 -3.1237 10 8 0.7113 2.3313 -3.6453 11 6 2.5508 3.7063 -3.1999 12 6 2.1001 4.8754 -3.7367 13 6 3.1866 5.7776 -3.5593 14 8 3.2316 6.9507 -3.8902 15 7 4.1576 5.0648 -2.9532 16 6 5.4698 5.5980 -2.5791 17 8 3.7989 3.9264 -2.7594 18 7 2.0184 -0.6908 1.1960 19 6 2.1715 -0.0022 2.3697 20 1 1.8615 1.0303 2.4345 21 6 2.7198 -0.6331 3.4780 22 7 2.9763 0.0577 4.5686 23 14 3.0937 -2.4624 3.4215 24 1 4.5066 -2.6665 3.0127 25 1 2.8772 -3.0536 4.7665 26 1 2.1944 -3.1214 2.4407 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5140 -0.8898 30 1 3.1250 -0.8118 -1.1992 31 1 1.5944 -1.7146 -1.3028 32 1 1.7847 -0.1268 -4.6346 33 1 3.1396 -0.8569 -3.7399 34 1 1.5511 -1.6600 -3.7615 35 1 3.1757 1.4719 -1.9972 36 1 1.1401 5.0719 -4.1908 37 1 6.0595 4.8129 -2.1058 38 1 5.9858 5.9522 -3.4715 39 1 5.3403 6.4255 -1.8817 40 1 2.2334 -1.6358 1.1565 41 1 3.3598 -0.3831 5.3429 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134219218.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:43:16 Heat of formation + Delta-G solvation = 20.034352 kcal Electronic energy + Delta-G solvation = -24268.782696 eV Core-core repulsion = 20575.187617 eV Total energy + Delta-G solvation = -3693.595079 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.152 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -45.31995 -40.17143 -38.33786 -37.33478 -34.99919 -34.57018 -32.47059 -32.38046 -31.19450 -29.19648 -28.20441 -26.51209 -24.53432 -23.71928 -23.43337 -21.37865 -20.64157 -19.95447 -18.97290 -18.61704 -17.76658 -17.35796 -16.53440 -15.66939 -15.34120 -15.17809 -14.76954 -14.49276 -14.35160 -14.01525 -13.91589 -13.72415 -13.60428 -13.37024 -13.19726 -12.79123 -12.64706 -12.33934 -12.09379 -11.88857 -11.43501 -11.08541 -10.84775 -10.67710 -10.63975 -10.31143 -10.30001 -10.24027 -10.07990 -9.68038 -9.32584 -8.97198 -8.75567 -7.34153 -5.83311 -3.18990 0.31610 1.34533 2.35549 2.52611 2.77851 3.17042 3.31723 3.34678 3.40658 4.29885 4.44301 4.53106 4.64766 4.75967 4.80678 4.85603 4.98641 5.10320 5.14346 5.40339 5.43658 5.52008 5.55173 5.57114 5.62112 5.71428 5.79178 5.98325 6.03201 6.10444 6.20505 6.40248 6.42101 6.74217 6.93869 7.04755 7.38760 7.68117 7.74342 7.94125 8.35772 9.14666 9.87154 10.06951 11.34838 Molecular weight = 297.15amu Principal moments of inertia in cm(-1) A = 0.015364 B = 0.003854 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.988922 B = 7263.373882 C = 8344.149225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.177 3.823 3 H 0.056 0.944 4 C -0.138 4.138 5 C 0.140 3.860 6 H 0.101 0.899 7 C -0.163 4.163 8 N -0.699 5.699 9 C 0.604 3.396 10 O -0.499 6.499 11 C 0.034 3.966 12 C -0.239 4.239 13 C 0.480 3.520 14 O -0.524 6.524 15 N -0.452 5.452 16 C 0.108 3.892 17 O -0.001 6.001 18 N -0.749 5.749 19 C -0.244 4.244 20 H 0.089 0.911 21 C 0.006 3.994 22 N -0.932 5.932 23 Si 0.883 3.117 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.276 1.276 27 H 0.046 0.954 28 H 0.056 0.944 29 H 0.042 0.958 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.070 0.930 35 H 0.410 0.590 36 H 0.193 0.807 37 H 0.101 0.899 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.360 0.640 41 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.350 3.295 -18.290 18.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.067 3.933 3 H 0.074 0.926 4 C -0.177 4.177 5 C 0.036 3.964 6 H 0.119 0.881 7 C -0.222 4.222 8 N -0.350 5.350 9 C 0.386 3.614 10 O -0.374 6.374 11 C -0.024 4.024 12 C -0.264 4.264 13 C 0.278 3.722 14 O -0.405 6.405 15 N -0.215 5.215 16 C -0.029 4.029 17 O -0.012 6.012 18 N -0.392 5.392 19 C -0.374 4.374 20 H 0.107 0.893 21 C -0.190 4.190 22 N -0.580 5.580 23 Si 0.713 3.287 24 H -0.212 1.212 25 H -0.218 1.218 26 H -0.203 1.203 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.061 0.939 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.246 0.754 36 H 0.210 0.790 37 H 0.119 0.881 38 H 0.108 0.892 39 H 0.110 0.890 40 H 0.193 0.807 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.960 3.939 -18.494 19.139 hybrid contribution 0.628 -1.284 0.485 1.509 sum 3.587 2.656 -18.009 18.554 Atomic orbital electron populations 1.22487 0.98921 1.00913 1.00601 1.20179 0.92123 0.95769 0.85181 0.92637 1.22280 1.02173 0.99600 0.93658 1.21252 0.98697 0.81033 0.95402 0.88125 1.22201 1.02012 1.00544 0.97418 1.46093 1.26976 1.10041 1.51935 1.16673 0.84455 0.80412 0.79894 1.90883 1.18278 1.81350 1.46866 1.23473 0.83275 0.97690 0.97992 1.23315 1.03029 0.92065 1.08014 1.18334 0.83474 0.88872 0.81500 1.90965 1.80700 1.14099 1.54716 1.46103 1.17407 1.00667 1.57299 1.22158 0.77865 1.00064 1.02764 1.84022 1.29843 1.16507 1.70829 1.42779 1.80301 1.08612 1.07490 1.19046 1.34176 0.96777 0.87428 0.89342 1.24671 1.00596 0.97529 0.96233 1.69714 1.49230 1.34851 1.04183 0.86545 0.78100 0.87082 0.76925 1.21184 1.21767 1.20257 0.93515 0.92516 0.93909 0.90880 0.90215 0.92247 0.92204 0.91088 0.75370 0.79004 0.88079 0.89228 0.89040 0.80742 0.93049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.80 9.28 37.16 0.34 -2.46 16 2 C 0.18 3.02 2.91 -67.93 -0.20 2.82 16 3 H 0.06 0.99 7.51 -51.93 -0.39 0.60 16 4 C -0.14 -1.74 4.42 -26.72 -0.12 -1.86 16 5 C 0.14 1.52 2.50 -67.93 -0.17 1.35 16 6 H 0.10 1.22 5.73 -51.93 -0.30 0.92 16 7 C -0.16 -1.47 9.49 37.16 0.35 -1.12 16 8 N -0.70 -7.40 4.40 -54.64 -0.24 -7.64 16 9 C 0.60 7.15 7.81 -12.16 -0.10 7.05 16 10 O -0.50 -7.13 16.51 5.37 0.09 -7.04 16 11 C 0.03 0.38 7.25 -36.18 -0.26 0.12 16 12 C -0.24 -2.82 10.94 -38.70 -0.42 -3.24 16 13 C 0.48 6.30 8.02 -14.65 -0.12 6.18 16 14 O -0.52 -8.48 17.92 4.94 0.09 -8.39 16 15 N -0.45 -4.75 3.68 -69.77 -0.26 -5.00 16 16 C 0.11 0.70 11.18 59.84 0.67 1.37 16 17 O 0.00 -0.01 10.71 16.84 0.18 0.18 16 18 N -0.75 -16.42 4.92 -53.42 -0.26 -16.69 16 19 C -0.24 -6.58 10.41 -15.06 -0.16 -6.74 16 20 H 0.09 2.58 8.06 -52.49 -0.42 2.16 16 21 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 22 N -0.93 -28.52 13.97 55.49 0.78 -27.75 16 23 Si 0.88 21.24 27.75 -169.99 -4.72 16.52 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 26 H -0.28 -6.23 6.52 56.52 0.37 -5.86 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.04 0.62 6.50 -51.93 -0.34 0.28 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.41 3.88 8.45 -40.82 -0.34 3.54 16 36 H 0.19 2.01 8.06 -52.49 -0.42 1.59 16 37 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.36 7.74 5.70 -40.82 -0.23 7.51 16 41 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 350.04 15.07 5.28 5.28 Total: -1.00 -34.46 350.04 -5.18 -39.64 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -5.84 Total: 7.34 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: -0.27 Total: 3.55 kcal Atomic # 7 Polarization: -57.09 SS G_CDS: 0.01 Total: -57.07 kcal Atomic # 8 Polarization: -15.61 SS G_CDS: 0.36 Total: -15.25 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.72 Total: 16.52 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.46 -5.18 -39.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134219218.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.677 kcal (2) G-P(sol) polarization free energy of solvation -34.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds