Wall clock time and date at job start Fri Apr 10 2020 17:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47373 * 2 1 4 4 C 1.53008 * 109.46579 * 240.00596 * 2 1 3 5 5 C 1.53004 * 109.47003 * 65.78468 * 4 2 1 6 6 H 1.08991 * 109.47081 * 304.55508 * 5 4 2 7 7 C 1.52998 * 109.46738 * 184.55181 * 5 4 2 8 8 N 1.46500 * 109.46832 * 64.55537 * 5 4 2 9 9 C 1.34779 * 119.99738 * 205.94616 * 8 5 4 10 10 O 1.21495 * 120.00217 * 5.05353 * 9 8 5 11 11 C 1.48205 * 119.99918 * 185.05300 * 9 8 5 12 12 C 1.36317 * 126.38487 * 184.87874 * 11 9 8 13 13 C 1.42339 * 104.01056 * 179.97438 * 12 11 9 14 14 O 1.21973 * 127.15251 * 180.13723 * 13 12 11 15 15 N 1.34840 * 105.70192 * 0.33026 * 13 12 11 16 16 C 1.46495 * 124.56776 * 179.82371 * 15 13 12 17 17 O 1.20919 * 110.86213 * 359.78752 * 15 13 12 18 18 N 1.46498 * 109.47356 * 120.01114 * 2 1 3 19 19 C 1.36939 * 119.99329 * 273.85362 * 18 2 1 20 20 H 1.07997 * 120.00419 * 4.67440 * 19 18 2 21 21 C 1.38814 * 119.99776 * 184.39727 * 19 18 2 22 22 N 1.31611 * 120.00190 * 174.00297 * 21 19 18 23 23 Si 1.86799 * 119.99717 * 354.00747 * 21 19 18 24 24 H 1.48495 * 109.47467 * 93.63869 * 23 21 19 25 25 H 1.48507 * 109.46948 * 213.63716 * 23 21 19 26 26 H 1.48497 * 109.47286 * 333.63443 * 23 21 19 27 27 H 1.08996 * 109.47373 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46881 * 299.99450 * 1 2 3 29 29 H 1.08993 * 109.47581 * 59.98844 * 1 2 3 30 30 H 1.08999 * 109.46830 * 185.78389 * 4 2 1 31 31 H 1.09003 * 109.47139 * 305.78603 * 4 2 1 32 32 H 1.09005 * 109.46932 * 179.97438 * 7 5 4 33 33 H 1.09004 * 109.47429 * 300.00099 * 7 5 4 34 34 H 1.09004 * 109.47088 * 60.00640 * 7 5 4 35 35 H 0.96998 * 120.00143 * 25.95010 * 8 5 4 36 36 H 1.07999 * 127.99189 * 0.02562 * 12 11 9 37 37 H 1.09000 * 109.47255 * 179.97438 * 16 15 13 38 38 H 1.09001 * 109.47132 * 299.98275 * 16 15 13 39 39 H 1.09001 * 109.46978 * 59.98155 * 16 15 13 40 40 H 0.96990 * 120.00369 * 93.85883 * 18 2 1 41 41 H 0.97002 * 120.00297 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 1.6520 0.0793 -2.4943 6 1 0.5739 0.2393 -2.5020 7 6 2.0614 -0.6968 -3.7476 8 7 2.3377 1.3737 -2.4758 9 6 1.8042 2.4283 -3.1237 10 8 0.7113 2.3313 -3.6453 11 6 2.5508 3.7063 -3.1999 12 6 2.1001 4.8754 -3.7367 13 6 3.1866 5.7776 -3.5593 14 8 3.2316 6.9507 -3.8902 15 7 4.1576 5.0648 -2.9532 16 6 5.4698 5.5980 -2.5791 17 8 3.7989 3.9264 -2.7594 18 7 2.0184 -0.6908 1.1960 19 6 2.1715 -0.0022 2.3697 20 1 1.8615 1.0303 2.4345 21 6 2.7198 -0.6331 3.4780 22 7 2.9763 0.0577 4.5686 23 14 3.0937 -2.4624 3.4215 24 1 4.5066 -2.6665 3.0127 25 1 2.8772 -3.0536 4.7665 26 1 2.1944 -3.1214 2.4407 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5140 -0.8898 30 1 3.1250 -0.8118 -1.1992 31 1 1.5944 -1.7146 -1.3028 32 1 1.7847 -0.1268 -4.6346 33 1 3.1396 -0.8569 -3.7399 34 1 1.5511 -1.6600 -3.7615 35 1 3.1757 1.4719 -1.9972 36 1 1.1401 5.0719 -4.1908 37 1 6.0595 4.8129 -2.1058 38 1 5.9858 5.9522 -3.4715 39 1 5.3403 6.4255 -1.8817 40 1 2.2334 -1.6358 1.1565 41 1 3.3598 -0.3831 5.3429 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134219218.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:43:15 Heat of formation + Delta-G solvation = -5.137969 kcal Electronic energy + Delta-G solvation = -24269.874250 eV Core-core repulsion = 20575.187617 eV Total energy + Delta-G solvation = -3694.686633 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.152 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -46.24632 -41.14308 -39.37520 -38.55249 -36.39516 -35.42429 -34.11277 -33.41271 -32.45420 -30.74399 -28.94663 -27.61844 -25.68054 -25.11555 -24.53775 -22.50186 -21.67813 -21.26926 -19.99014 -19.52518 -19.49934 -18.33509 -17.49599 -16.81598 -16.47701 -16.27155 -16.13284 -15.93110 -15.39372 -15.22068 -15.03476 -14.79957 -14.60355 -14.40758 -14.25000 -13.94494 -13.69588 -13.48096 -13.38437 -12.99160 -12.84607 -12.70627 -12.20736 -12.10600 -11.83492 -11.74060 -11.60249 -11.49427 -11.32878 -11.12398 -10.93334 -10.25186 -9.69765 -9.28764 -7.99167 -5.31977 -0.61896 0.51806 1.36625 1.41328 1.45229 1.52834 1.61216 1.82094 2.26141 2.52244 3.31689 3.37285 3.47382 3.64854 3.86403 3.99083 4.14304 4.21859 4.26493 4.30864 4.46216 4.59644 4.61432 4.66399 4.67518 4.77999 4.80074 4.94027 4.98078 5.06392 5.10062 5.32990 5.38595 5.41508 5.59334 5.82179 6.13683 6.25141 6.43265 6.77530 6.82278 7.12947 7.89609 8.09078 9.22474 Molecular weight = 297.15amu Principal moments of inertia in cm(-1) A = 0.015364 B = 0.003854 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.988922 B = 7263.373882 C = 8344.149225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.169 3.831 3 H 0.043 0.957 4 C -0.125 4.125 5 C 0.144 3.856 6 H 0.091 0.909 7 C -0.157 4.157 8 N -0.692 5.692 9 C 0.609 3.391 10 O -0.524 6.524 11 C 0.039 3.961 12 C -0.247 4.247 13 C 0.467 3.533 14 O -0.565 6.565 15 N -0.444 5.444 16 C 0.095 3.905 17 O 0.014 5.986 18 N -0.750 5.750 19 C -0.227 4.227 20 H 0.051 0.949 21 C -0.065 4.065 22 N -0.986 5.986 23 Si 0.956 3.044 24 H -0.276 1.276 25 H -0.303 1.303 26 H -0.248 1.248 27 H 0.056 0.944 28 H 0.023 0.977 29 H 0.064 0.936 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.053 0.947 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.417 0.583 36 H 0.200 0.800 37 H 0.127 0.873 38 H 0.104 0.896 39 H 0.096 0.904 40 H 0.366 0.634 41 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.135 0.930 -20.002 20.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.061 3.939 3 H 0.061 0.939 4 C -0.163 4.163 5 C 0.040 3.960 6 H 0.109 0.891 7 C -0.215 4.215 8 N -0.343 5.343 9 C 0.391 3.609 10 O -0.401 6.401 11 C -0.021 4.021 12 C -0.272 4.272 13 C 0.266 3.734 14 O -0.450 6.450 15 N -0.205 5.205 16 C -0.040 4.040 17 O 0.001 5.999 18 N -0.394 5.394 19 C -0.358 4.358 20 H 0.069 0.931 21 C -0.257 4.257 22 N -0.637 5.637 23 Si 0.783 3.217 24 H -0.202 1.202 25 H -0.230 1.230 26 H -0.172 1.172 27 H 0.075 0.925 28 H 0.043 0.957 29 H 0.083 0.917 30 H 0.101 0.899 31 H 0.115 0.885 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.104 0.896 35 H 0.254 0.746 36 H 0.217 0.783 37 H 0.145 0.855 38 H 0.122 0.878 39 H 0.114 0.886 40 H 0.200 0.800 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.769 1.550 -20.251 20.657 hybrid contribution 0.377 -0.476 1.021 1.188 sum 4.146 1.074 -19.230 19.701 Atomic orbital electron populations 1.22377 0.98338 1.01369 1.00094 1.20422 0.92388 0.95542 0.85510 0.93857 1.22134 1.02715 0.99905 0.91561 1.21225 0.98184 0.80912 0.95642 0.89111 1.22141 1.02946 1.00686 0.95698 1.46090 1.27046 1.09831 1.51342 1.16618 0.84078 0.80555 0.79660 1.90874 1.19368 1.81771 1.48093 1.23327 0.83473 0.97364 0.97922 1.23427 1.03295 0.92092 1.08421 1.18507 0.84315 0.88641 0.81910 1.90934 1.81607 1.15589 1.56840 1.46399 1.18009 1.00300 1.55763 1.22589 0.76380 1.01098 1.03888 1.84043 1.29409 1.16353 1.70065 1.42769 1.80425 1.08881 1.07291 1.18975 1.32066 0.95474 0.89271 0.93115 1.25511 1.01564 1.02705 0.95884 1.69908 1.51490 1.37081 1.05230 0.85381 0.78697 0.80768 0.76855 1.20214 1.23049 1.17225 0.92535 0.95748 0.91712 0.89897 0.88532 0.92746 0.91019 0.89649 0.74577 0.78321 0.85465 0.87790 0.88592 0.80028 0.93517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.12 9.28 71.98 0.67 -4.45 16 2 C 0.17 5.46 2.91 44.99 0.13 5.59 16 3 H 0.04 1.51 7.51 -2.39 -0.02 1.49 16 4 C -0.12 -2.69 4.42 30.60 0.14 -2.56 16 5 C 0.14 2.68 2.50 44.99 0.11 2.79 16 6 H 0.09 1.94 5.73 -2.39 -0.01 1.92 16 7 C -0.16 -2.23 9.49 71.98 0.68 -1.55 16 8 N -0.69 -13.08 4.40 -445.09 -1.96 -15.04 16 9 C 0.61 13.51 7.81 86.89 0.68 14.19 16 10 O -0.52 -14.36 16.51 -3.70 -0.06 -14.42 16 11 C 0.04 0.82 7.25 24.47 0.18 1.00 16 12 C -0.25 -5.78 10.94 22.84 0.25 -5.53 16 13 C 0.47 12.23 8.02 85.25 0.68 12.91 16 14 O -0.57 -18.66 17.92 -5.23 -0.09 -18.75 16 15 N -0.44 -8.84 3.68 -492.74 -1.82 -10.65 16 16 C 0.09 1.08 11.18 127.77 1.43 2.51 16 17 O 0.01 0.26 10.71 70.43 0.75 1.01 16 18 N -0.75 -31.57 4.92 -322.93 -1.59 -33.16 16 19 C -0.23 -12.27 10.41 84.03 0.87 -11.40 16 20 H 0.05 3.07 8.06 -2.91 -0.02 3.05 16 21 C -0.07 -3.71 5.50 84.86 0.47 -3.24 16 22 N -0.99 -61.82 13.97 21.65 0.30 -61.52 16 23 Si 0.96 43.17 27.75 68.60 1.90 45.07 16 24 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 25 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 26 H -0.25 -9.90 6.52 99.48 0.65 -9.25 16 27 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.06 1.75 6.50 -2.39 -0.02 1.74 16 30 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 33 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 34 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 35 H 0.42 6.86 8.45 -92.71 -0.78 6.08 16 36 H 0.20 4.20 8.06 -2.91 -0.02 4.18 16 37 H 0.13 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.37 14.54 5.70 -92.72 -0.53 14.02 16 41 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -76.23 350.04 3.43 -72.80 By element: Atomic # 1 Polarization: 24.68 SS G_CDS: -0.31 Total: 24.38 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: 6.29 Total: 10.28 kcal Atomic # 7 Polarization: -115.32 SS G_CDS: -5.06 Total: -120.38 kcal Atomic # 8 Polarization: -32.76 SS G_CDS: 0.60 Total: -32.16 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 1.90 Total: 45.07 kcal Total: -76.23 3.43 -72.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134219218.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.664 kcal (2) G-P(sol) polarization free energy of solvation -76.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds