Wall clock time and date at job start Fri Apr 10 2020 17:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 109.47447 * 2 1 4 4 C 1.52998 * 109.47152 * 239.99559 * 2 1 3 5 5 C 1.52998 * 109.47384 * 175.00127 * 4 2 1 6 6 H 1.09003 * 109.47082 * 305.00221 * 5 4 2 7 7 C 1.52995 * 109.47443 * 185.00170 * 5 4 2 8 8 N 1.46498 * 109.47009 * 65.00045 * 5 4 2 9 9 C 1.36935 * 120.00239 * 204.99963 * 8 5 4 10 10 H 1.08004 * 120.00069 * 0.02562 * 9 8 5 11 11 C 1.38811 * 120.00368 * 180.02562 * 9 8 5 12 12 N 1.31624 * 119.99540 * 359.72375 * 11 9 8 13 13 Si 1.86800 * 120.00451 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47364 * 179.72253 * 13 11 9 15 15 H 1.48508 * 109.46883 * 299.72375 * 13 11 9 16 16 H 1.48497 * 109.46870 * 59.72186 * 13 11 9 17 17 N 1.46502 * 109.47002 * 120.00309 * 2 1 3 18 18 C 1.34784 * 119.99713 * 274.99674 * 17 2 1 19 19 O 1.21491 * 119.99623 * 0.02562 * 18 17 2 20 20 C 1.48207 * 120.00041 * 179.97438 * 18 17 2 21 21 C 1.36309 * 126.38566 * 179.71149 * 20 18 17 22 22 C 1.42340 * 104.00684 * 179.87553 * 21 20 18 23 23 O 1.21979 * 127.14628 * 180.13801 * 22 21 20 24 24 N 1.34826 * 105.70443 * 0.39014 * 22 21 20 25 25 C 1.46494 * 124.56609 * 179.78712 * 24 22 21 26 26 O 1.20926 * 110.86616 * 359.74679 * 24 22 21 27 27 H 1.09006 * 109.47749 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47223 * 300.00336 * 1 2 3 29 29 H 1.09004 * 109.47405 * 60.00047 * 1 2 3 30 30 H 1.08997 * 109.46877 * 55.00516 * 4 2 1 31 31 H 1.08999 * 109.47306 * 295.00668 * 4 2 1 32 32 H 1.08996 * 109.47329 * 300.00343 * 7 5 4 33 33 H 1.09003 * 109.46933 * 60.00266 * 7 5 4 34 34 H 1.09004 * 109.47411 * 179.97438 * 7 5 4 35 35 H 0.97004 * 119.99747 * 25.00702 * 8 5 4 36 36 H 0.97000 * 120.00481 * 0.27542 * 12 11 9 37 37 H 0.96995 * 120.00766 * 94.99860 * 17 2 1 38 38 H 1.08009 * 127.99461 * 0.02562 * 21 20 18 39 39 H 1.09005 * 109.47469 * 179.97438 * 25 24 22 40 40 H 1.09002 * 109.47449 * 299.98168 * 25 24 22 41 41 H 1.08999 * 109.47682 * 59.98193 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5647 -0.6134 -1.3137 6 1 3.8570 0.4357 -1.2678 7 6 4.0644 -1.2252 -2.6239 8 7 4.1535 -1.3343 -0.1824 9 6 5.3942 -0.9858 0.2807 10 1 5.9385 -0.1791 -0.1879 11 6 5.9524 -1.6691 1.3523 12 7 5.2867 -2.6486 1.9268 13 14 7.6445 -1.1932 1.9844 14 1 8.0079 -2.0645 3.1307 15 1 8.6438 -1.3612 0.8987 16 1 7.6271 0.2244 2.4262 17 7 2.0182 -0.6907 1.1962 18 6 2.1470 -0.0183 2.3572 19 8 1.8576 1.1604 2.4118 20 6 2.6404 -0.7171 3.5674 21 6 2.8250 -0.1662 4.8005 22 6 3.3022 -1.2478 5.5932 23 8 3.6013 -1.2188 6.7754 24 7 3.3603 -2.3097 4.7645 25 6 3.8059 -3.6484 5.1589 26 8 2.9944 -2.0085 3.6520 27 1 -0.3635 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.6054 -0.2618 -2.1369 31 1 1.7515 -1.7716 -1.2055 32 1 3.7721 -2.2742 -2.6699 33 1 3.6263 -0.6888 -3.4657 34 1 5.1507 -1.1479 -2.6701 35 1 3.6646 -2.0586 0.2387 36 1 4.4079 -2.8955 1.5989 37 1 2.2489 -1.6318 1.1527 38 1 2.6475 0.8545 5.1061 39 1 3.7545 -4.3165 4.2991 40 1 4.8335 -3.5979 5.5189 41 1 3.1613 -4.0270 5.9521 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134219219.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:43:18 Heat of formation + Delta-G solvation = 24.154697 kcal Electronic energy + Delta-G solvation = -25969.102316 eV Core-core repulsion = 22275.685908 eV Total energy + Delta-G solvation = -3693.416408 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.152 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -44.51959 -39.65630 -37.59821 -37.14724 -34.56625 -33.82535 -32.61215 -31.68507 -30.83648 -28.40936 -27.47094 -26.51457 -23.79180 -23.55860 -22.88361 -21.01978 -20.53296 -19.77486 -18.19827 -17.78554 -17.47284 -16.78570 -16.18855 -15.20761 -14.93984 -14.62384 -14.48028 -14.24359 -13.79748 -13.56250 -13.35305 -13.28700 -13.11860 -13.09908 -12.85237 -12.43504 -12.29911 -12.17992 -11.85922 -11.74281 -11.23705 -10.84440 -10.59543 -10.55656 -10.29426 -10.12988 -10.04027 -9.62270 -9.49112 -9.24738 -9.07734 -8.72947 -7.97085 -7.09422 -6.16547 -3.15441 1.05199 2.12959 3.03365 3.13961 3.47703 3.50634 3.51683 3.65770 3.84679 4.59442 4.82412 4.99933 5.17153 5.21234 5.28324 5.44316 5.44901 5.52080 5.54029 5.59911 5.67858 5.75300 5.81194 5.85764 5.95006 6.06423 6.14519 6.17763 6.23886 6.34102 6.38729 6.39196 6.64805 6.74844 6.91823 7.60606 7.76111 8.10727 8.28589 8.50013 8.66766 9.12034 9.96759 10.12082 11.29878 Molecular weight = 297.15amu Principal moments of inertia in cm(-1) A = 0.011931 B = 0.007967 C = 0.005523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2346.255042 B = 3513.433501 C = 5068.495433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.148 3.852 3 H 0.090 0.910 4 C -0.135 4.135 5 C 0.173 3.827 6 H 0.050 0.950 7 C -0.163 4.163 8 N -0.728 5.728 9 C -0.323 4.323 10 H 0.061 0.939 11 C -0.037 4.037 12 N -0.933 5.933 13 Si 1.067 2.933 14 H -0.286 1.286 15 H -0.297 1.297 16 H -0.297 1.297 17 N -0.681 5.681 18 C 0.613 3.387 19 O -0.518 6.518 20 C 0.048 3.952 21 C -0.264 4.264 22 C 0.476 3.524 23 O -0.545 6.545 24 N -0.430 5.430 25 C 0.119 3.881 26 O 0.033 5.967 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.043 0.957 33 H 0.037 0.963 34 H 0.053 0.947 35 H 0.359 0.641 36 H 0.249 0.751 37 H 0.406 0.594 38 H 0.184 0.816 39 H 0.101 0.899 40 H 0.087 0.913 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.294 -1.080 -3.286 9.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.044 3.956 3 H 0.108 0.892 4 C -0.174 4.174 5 C 0.064 3.936 6 H 0.068 0.932 7 C -0.223 4.223 8 N -0.373 5.373 9 C -0.454 4.454 10 H 0.079 0.921 11 C -0.235 4.235 12 N -0.579 5.579 13 Si 0.899 3.101 14 H -0.212 1.212 15 H -0.224 1.224 16 H -0.225 1.225 17 N -0.332 5.332 18 C 0.395 3.605 19 O -0.394 6.394 20 C -0.012 4.012 21 C -0.290 4.290 22 C 0.276 3.724 23 O -0.429 6.429 24 N -0.189 5.189 25 C -0.018 4.018 26 O 0.021 5.979 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.083 0.917 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.194 0.806 36 H 0.061 0.939 37 H 0.244 0.756 38 H 0.201 0.799 39 H 0.120 0.880 40 H 0.105 0.895 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.963 -0.791 -1.696 8.180 hybrid contribution -0.822 -0.215 -1.251 1.512 sum -8.784 -1.006 -2.947 9.320 Atomic orbital electron populations 1.22222 0.95545 1.02016 1.02453 1.20979 0.92950 0.97899 0.83748 0.89207 1.22244 0.97980 1.00632 0.96502 1.20240 0.89373 0.96029 0.87991 0.93150 1.22396 1.01698 1.00201 0.97983 1.42477 1.19158 1.40004 1.35638 1.19949 0.94300 1.16435 1.14731 0.92085 1.25452 1.05143 0.97189 0.95704 1.70924 1.13785 1.30125 1.43094 0.83393 0.75254 0.75389 0.76081 1.21179 1.22449 1.22457 1.45952 1.64338 1.14453 1.08487 1.16587 0.77579 0.85391 0.80933 1.90800 1.50985 1.13904 1.83742 1.23261 0.98410 0.82576 0.96987 1.23065 1.10891 1.02245 0.92752 1.18251 0.83007 0.83132 0.88038 1.90891 1.55793 1.82913 1.13281 1.45874 1.59617 1.13218 1.00183 1.21972 1.00961 0.77429 1.01394 1.84142 1.69830 1.26112 1.17794 0.92548 0.92117 0.91568 0.90247 0.91672 0.93746 0.94431 0.92768 0.80617 0.93941 0.75618 0.79891 0.88022 0.89486 0.90320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.88 9.48 37.15 0.35 -1.52 16 2 C 0.15 2.10 2.57 -67.93 -0.17 1.92 16 3 H 0.09 1.44 7.58 -51.93 -0.39 1.05 16 4 C -0.13 -1.79 4.43 -26.73 -0.12 -1.91 16 5 C 0.17 3.00 2.89 -67.93 -0.20 2.80 16 6 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 7 C -0.16 -2.63 9.49 37.16 0.35 -2.28 16 8 N -0.73 -15.35 3.84 -53.43 -0.21 -15.55 16 9 C -0.32 -8.14 9.93 -15.06 -0.15 -8.29 16 10 H 0.06 1.60 7.83 -52.48 -0.41 1.19 16 11 C -0.04 -0.96 5.50 -17.43 -0.10 -1.05 16 12 N -0.93 -24.03 13.11 55.49 0.73 -23.31 16 13 Si 1.07 25.18 29.92 -169.99 -5.09 20.10 16 14 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 15 H -0.30 -6.80 7.11 56.52 0.40 -6.40 16 16 H -0.30 -7.04 7.11 56.52 0.40 -6.64 16 17 N -0.68 -11.07 3.80 -54.64 -0.21 -11.27 16 18 C 0.61 11.40 7.81 -12.16 -0.09 11.31 16 19 O -0.52 -10.48 16.56 5.37 0.09 -10.39 16 20 C 0.05 0.92 7.25 -36.18 -0.26 0.66 16 21 C -0.26 -5.07 10.94 -38.70 -0.42 -5.49 16 22 C 0.48 9.73 8.02 -14.66 -0.12 9.62 16 23 O -0.55 -12.36 17.92 4.94 0.09 -12.28 16 24 N -0.43 -7.98 3.68 -69.77 -0.26 -8.24 16 25 C 0.12 1.76 11.18 59.84 0.67 2.43 16 26 O 0.03 0.62 9.85 16.84 0.17 0.78 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.36 7.54 4.54 -40.82 -0.19 7.35 16 36 H 0.25 6.18 6.53 -40.82 -0.27 5.91 16 37 H 0.41 6.62 6.32 -40.82 -0.26 6.37 16 38 H 0.18 3.19 8.06 -52.48 -0.42 2.77 16 39 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 40 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 347.98 15.07 5.24 5.24 Total: -1.00 -30.73 347.98 -5.50 -36.23 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: -5.80 Total: 10.49 kcal Atomic # 6 Polarization: 8.45 SS G_CDS: -0.26 Total: 8.19 kcal Atomic # 7 Polarization: -58.43 SS G_CDS: 0.06 Total: -58.37 kcal Atomic # 8 Polarization: -22.22 SS G_CDS: 0.34 Total: -21.88 kcal Atomic # 14 Polarization: 25.18 SS G_CDS: -5.09 Total: 20.10 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.73 -5.50 -36.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134219219.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.384 kcal (2) G-P(sol) polarization free energy of solvation -30.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds