Wall clock time and date at job start Fri Apr 10 2020 17:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 109.47447 * 2 1 4 4 C 1.52998 * 109.47152 * 239.99559 * 2 1 3 5 5 C 1.52998 * 109.47384 * 175.00127 * 4 2 1 6 6 H 1.09003 * 109.47082 * 305.00221 * 5 4 2 7 7 C 1.52995 * 109.47443 * 185.00170 * 5 4 2 8 8 N 1.46498 * 109.47009 * 65.00045 * 5 4 2 9 9 C 1.36935 * 120.00239 * 204.99963 * 8 5 4 10 10 H 1.08004 * 120.00069 * 0.02562 * 9 8 5 11 11 C 1.38811 * 120.00368 * 180.02562 * 9 8 5 12 12 N 1.31624 * 119.99540 * 359.72375 * 11 9 8 13 13 Si 1.86800 * 120.00451 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47364 * 179.72253 * 13 11 9 15 15 H 1.48508 * 109.46883 * 299.72375 * 13 11 9 16 16 H 1.48497 * 109.46870 * 59.72186 * 13 11 9 17 17 N 1.46502 * 109.47002 * 120.00309 * 2 1 3 18 18 C 1.34784 * 119.99713 * 274.99674 * 17 2 1 19 19 O 1.21491 * 119.99623 * 0.02562 * 18 17 2 20 20 C 1.48207 * 120.00041 * 179.97438 * 18 17 2 21 21 C 1.36309 * 126.38566 * 179.71149 * 20 18 17 22 22 C 1.42340 * 104.00684 * 179.87553 * 21 20 18 23 23 O 1.21979 * 127.14628 * 180.13801 * 22 21 20 24 24 N 1.34826 * 105.70443 * 0.39014 * 22 21 20 25 25 C 1.46494 * 124.56609 * 179.78712 * 24 22 21 26 26 O 1.20926 * 110.86616 * 359.74679 * 24 22 21 27 27 H 1.09006 * 109.47749 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47223 * 300.00336 * 1 2 3 29 29 H 1.09004 * 109.47405 * 60.00047 * 1 2 3 30 30 H 1.08997 * 109.46877 * 55.00516 * 4 2 1 31 31 H 1.08999 * 109.47306 * 295.00668 * 4 2 1 32 32 H 1.08996 * 109.47329 * 300.00343 * 7 5 4 33 33 H 1.09003 * 109.46933 * 60.00266 * 7 5 4 34 34 H 1.09004 * 109.47411 * 179.97438 * 7 5 4 35 35 H 0.97004 * 119.99747 * 25.00702 * 8 5 4 36 36 H 0.97000 * 120.00481 * 0.27542 * 12 11 9 37 37 H 0.96995 * 120.00766 * 94.99860 * 17 2 1 38 38 H 1.08009 * 127.99461 * 0.02562 * 21 20 18 39 39 H 1.09005 * 109.47469 * 179.97438 * 25 24 22 40 40 H 1.09002 * 109.47449 * 299.98168 * 25 24 22 41 41 H 1.08999 * 109.47682 * 59.98193 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5647 -0.6134 -1.3137 6 1 3.8570 0.4357 -1.2678 7 6 4.0644 -1.2252 -2.6239 8 7 4.1535 -1.3343 -0.1824 9 6 5.3942 -0.9858 0.2807 10 1 5.9385 -0.1791 -0.1879 11 6 5.9524 -1.6691 1.3523 12 7 5.2867 -2.6486 1.9268 13 14 7.6445 -1.1932 1.9844 14 1 8.0079 -2.0645 3.1307 15 1 8.6438 -1.3612 0.8987 16 1 7.6271 0.2244 2.4262 17 7 2.0182 -0.6907 1.1962 18 6 2.1470 -0.0183 2.3572 19 8 1.8576 1.1604 2.4118 20 6 2.6404 -0.7171 3.5674 21 6 2.8250 -0.1662 4.8005 22 6 3.3022 -1.2478 5.5932 23 8 3.6013 -1.2188 6.7754 24 7 3.3603 -2.3097 4.7645 25 6 3.8059 -3.6484 5.1589 26 8 2.9944 -2.0085 3.6520 27 1 -0.3635 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.6054 -0.2618 -2.1369 31 1 1.7515 -1.7716 -1.2055 32 1 3.7721 -2.2742 -2.6699 33 1 3.6263 -0.6888 -3.4657 34 1 5.1507 -1.1479 -2.6701 35 1 3.6646 -2.0586 0.2387 36 1 4.4079 -2.8955 1.5989 37 1 2.2489 -1.6318 1.1527 38 1 2.6475 0.8545 5.1061 39 1 3.7545 -4.3165 4.2991 40 1 4.8335 -3.5979 5.5189 41 1 3.1613 -4.0270 5.9521 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134219219.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:43:18 Heat of formation + Delta-G solvation = 4.473314 kcal Electronic energy + Delta-G solvation = -25969.955765 eV Core-core repulsion = 22275.685908 eV Total energy + Delta-G solvation = -3694.269857 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.152 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -46.04135 -41.05606 -39.21153 -38.56419 -36.09168 -35.27112 -34.23778 -33.23074 -32.17482 -30.02612 -28.80145 -27.64505 -25.42314 -25.18797 -24.38754 -22.33574 -21.86458 -21.24150 -19.66377 -19.35989 -19.25431 -18.21615 -17.53052 -16.75692 -16.43552 -16.07780 -16.00450 -15.88697 -15.53176 -15.14848 -14.88304 -14.67138 -14.47719 -14.44459 -14.11712 -13.61955 -13.51782 -13.41142 -13.15230 -12.85772 -12.75894 -12.56155 -12.20899 -11.91653 -11.79873 -11.70958 -11.55365 -11.20354 -11.09831 -10.97716 -10.85352 -10.11561 -9.51468 -8.88023 -8.15778 -5.08594 -0.45779 0.70284 1.49517 1.56074 1.61107 1.70410 1.75479 2.03644 2.40041 2.70110 3.46942 3.55173 3.69359 3.81628 3.91557 4.01724 4.08930 4.30167 4.33094 4.35688 4.51234 4.61655 4.66679 4.70646 4.80197 4.83074 4.83907 4.95993 5.02161 5.07138 5.09903 5.33197 5.35384 5.46319 5.58620 5.77752 6.21368 6.56323 6.72871 6.86929 6.97868 7.28402 8.14276 8.27288 9.33161 Molecular weight = 297.15amu Principal moments of inertia in cm(-1) A = 0.011931 B = 0.007967 C = 0.005523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2346.255042 B = 3513.433501 C = 5068.495433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.143 3.857 3 H 0.069 0.931 4 C -0.121 4.121 5 C 0.165 3.835 6 H 0.030 0.970 7 C -0.153 4.153 8 N -0.731 5.731 9 C -0.322 4.322 10 H 0.043 0.957 11 C -0.076 4.076 12 N -0.942 5.942 13 Si 1.094 2.906 14 H -0.295 1.295 15 H -0.287 1.287 16 H -0.303 1.303 17 N -0.670 5.670 18 C 0.609 3.391 19 O -0.539 6.539 20 C 0.043 3.957 21 C -0.272 4.272 22 C 0.464 3.536 23 O -0.576 6.576 24 N -0.427 5.427 25 C 0.110 3.890 26 O 0.037 5.963 27 H 0.071 0.929 28 H 0.045 0.955 29 H 0.092 0.908 30 H 0.116 0.884 31 H 0.079 0.921 32 H 0.047 0.953 33 H 0.070 0.930 34 H 0.024 0.976 35 H 0.361 0.639 36 H 0.251 0.749 37 H 0.407 0.593 38 H 0.195 0.805 39 H 0.113 0.887 40 H 0.080 0.920 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.743 -1.760 -5.021 11.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.040 3.960 3 H 0.087 0.913 4 C -0.159 4.159 5 C 0.057 3.943 6 H 0.048 0.952 7 C -0.213 4.213 8 N -0.376 5.376 9 C -0.454 4.454 10 H 0.061 0.939 11 C -0.272 4.272 12 N -0.589 5.589 13 Si 0.925 3.075 14 H -0.221 1.221 15 H -0.214 1.214 16 H -0.230 1.230 17 N -0.321 5.321 18 C 0.391 3.609 19 O -0.418 6.418 20 C -0.018 4.018 21 C -0.297 4.297 22 C 0.265 3.735 23 O -0.463 6.463 24 N -0.183 5.183 25 C -0.025 4.025 26 O 0.025 5.975 27 H 0.090 0.910 28 H 0.064 0.936 29 H 0.111 0.889 30 H 0.134 0.866 31 H 0.098 0.902 32 H 0.066 0.934 33 H 0.089 0.911 34 H 0.043 0.957 35 H 0.195 0.805 36 H 0.062 0.938 37 H 0.245 0.755 38 H 0.212 0.788 39 H 0.132 0.868 40 H 0.099 0.901 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -9.424 -1.503 -3.499 10.164 hybrid contribution -0.369 -0.006 -0.810 0.890 sum -9.793 -1.509 -4.308 10.805 Atomic orbital electron populations 1.22140 0.92836 1.03209 1.03044 1.21196 0.94977 0.96662 0.83156 0.91313 1.22165 0.94559 1.01804 0.97339 1.20459 0.92180 0.94443 0.87235 0.95180 1.22257 0.99912 1.00784 0.98364 1.42495 1.18050 1.40334 1.36736 1.19979 0.95719 1.15448 1.14254 0.93852 1.26018 1.06730 0.97855 0.96567 1.70939 1.14095 1.30431 1.43410 0.82986 0.74237 0.74566 0.75665 1.22135 1.21377 1.23049 1.46034 1.63204 1.14386 1.08448 1.16608 0.77732 0.85203 0.81383 1.90783 1.52272 1.14705 1.84074 1.23440 0.98433 0.82627 0.97285 1.23253 1.10975 1.02719 0.92785 1.18411 0.83332 0.83881 0.87918 1.90861 1.57495 1.83556 1.14369 1.46168 1.58472 1.13975 0.99720 1.22326 1.01344 0.75960 1.02893 1.84150 1.69398 1.26079 1.17876 0.91010 0.93606 0.88945 0.86629 0.90223 0.93373 0.91114 0.95662 0.80500 0.93815 0.75531 0.78816 0.86800 0.90135 0.87170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.03 9.48 71.98 0.68 -2.35 16 2 C 0.14 3.73 2.57 44.99 0.12 3.84 16 3 H 0.07 2.12 7.58 -2.39 -0.02 2.10 16 4 C -0.12 -2.76 4.43 30.59 0.14 -2.63 16 5 C 0.17 5.40 2.89 44.99 0.13 5.53 16 6 H 0.03 1.11 8.08 -2.39 -0.02 1.09 16 7 C -0.15 -4.59 9.49 71.98 0.68 -3.90 16 8 N -0.73 -30.11 3.84 -322.95 -1.24 -31.35 16 9 C -0.32 -16.17 9.93 84.03 0.83 -15.34 16 10 H 0.04 2.30 7.83 -2.91 -0.02 2.28 16 11 C -0.08 -3.91 5.50 84.86 0.47 -3.44 16 12 N -0.94 -47.93 13.11 21.65 0.28 -47.65 16 13 Si 1.09 51.15 29.92 68.60 2.05 53.20 16 14 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 15 H -0.29 -12.79 7.11 99.48 0.71 -12.09 16 16 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 17 N -0.67 -20.96 3.80 -445.09 -1.69 -22.65 16 18 C 0.61 22.44 7.81 86.89 0.68 23.12 16 19 O -0.54 -21.85 16.56 -3.69 -0.06 -21.91 16 20 C 0.04 1.64 7.25 24.47 0.18 1.82 16 21 C -0.27 -10.52 10.94 22.84 0.25 -10.27 16 22 C 0.46 19.06 8.02 85.25 0.68 19.75 16 23 O -0.58 -26.40 17.92 -5.25 -0.09 -26.49 16 24 N -0.43 -15.63 3.68 -492.75 -1.82 -17.44 16 25 C 0.11 3.13 11.18 127.77 1.43 4.56 16 26 O 0.04 1.38 9.85 70.42 0.69 2.08 16 27 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 28 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 30 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.02 0.87 8.14 -2.38 -0.02 0.86 16 35 H 0.36 14.64 4.54 -92.71 -0.42 14.22 16 36 H 0.25 12.21 6.53 -92.71 -0.61 11.61 16 37 H 0.41 12.66 6.32 -92.71 -0.59 12.07 16 38 H 0.19 6.84 8.06 -2.91 -0.02 6.82 16 39 H 0.11 2.95 8.14 -2.38 -0.02 2.93 16 40 H 0.08 2.42 8.14 -2.39 -0.02 2.41 16 41 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 Total: -1.00 -66.30 347.98 4.61 -61.70 By element: Atomic # 1 Polarization: 29.61 SS G_CDS: 0.21 Total: 29.82 kcal Atomic # 6 Polarization: 14.43 SS G_CDS: 6.27 Total: 20.70 kcal Atomic # 7 Polarization: -114.62 SS G_CDS: -4.46 Total: -119.09 kcal Atomic # 8 Polarization: -46.86 SS G_CDS: 0.54 Total: -46.33 kcal Atomic # 14 Polarization: 51.15 SS G_CDS: 2.05 Total: 53.20 kcal Total: -66.30 4.61 -61.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134219219.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.169 kcal (2) G-P(sol) polarization free energy of solvation -66.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds