Wall clock time and date at job start Fri Apr 10 2020 17:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86806 * 120.00176 * 2 1 4 4 H 1.48506 * 109.46975 * 269.99945 * 3 2 1 5 5 H 1.48495 * 109.47054 * 29.99850 * 3 2 1 6 6 H 1.48498 * 109.47132 * 150.00234 * 3 2 1 7 7 C 1.38815 * 120.00116 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99606 * 359.97438 * 7 2 1 9 9 N 1.36938 * 119.99975 * 179.97438 * 7 2 1 10 10 C 1.46502 * 120.00099 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47280 * 180.02562 * 10 9 7 12 12 N 1.46508 * 109.46967 * 180.02562 * 11 10 9 13 13 C 1.34775 * 119.99580 * 179.97438 * 12 11 10 14 14 O 1.21279 * 120.00550 * 354.99083 * 13 12 11 15 15 C 1.50699 * 119.99496 * 174.71139 * 13 12 11 16 16 N 1.46905 * 112.85061 * 181.36171 * 15 13 12 17 17 C 1.47016 * 110.99834 * 61.42884 * 16 15 13 18 18 C 1.53099 * 109.25392 * 177.61297 * 17 16 15 19 19 O 1.43014 * 109.26051 * 56.84550 * 18 17 16 20 20 C 1.43009 * 113.73957 * 301.32880 * 19 18 17 21 21 C 1.47017 * 110.99518 * 297.79682 * 16 15 13 22 22 C 1.53786 * 113.61768 * 50.16547 * 15 13 12 23 23 C 1.53953 * 87.02072 * 220.04905 * 22 15 13 24 24 C 1.53781 * 87.11215 * 25.36112 * 23 22 15 25 25 H 0.97002 * 120.00051 * 359.97438 * 1 2 3 26 26 H 0.97005 * 120.00351 * 0.02562 * 9 7 2 27 27 H 1.09000 * 109.46775 * 59.99813 * 10 9 7 28 28 H 1.09000 * 109.47161 * 300.00321 * 10 9 7 29 29 H 1.09000 * 109.47479 * 60.00109 * 11 10 9 30 30 H 1.09000 * 109.47175 * 300.00177 * 11 10 9 31 31 H 0.96995 * 119.99798 * 0.02562 * 12 11 10 32 32 H 1.08996 * 109.50527 * 297.54384 * 17 16 15 33 33 H 1.09000 * 109.50746 * 57.67675 * 17 16 15 34 34 H 1.09007 * 109.50477 * 296.90986 * 18 17 16 35 35 H 1.08998 * 109.50348 * 176.78846 * 18 17 16 36 36 H 1.08991 * 109.50762 * 298.73667 * 20 19 18 37 37 H 1.08998 * 109.50524 * 178.60623 * 20 19 18 38 38 H 1.09000 * 109.50320 * 302.32347 * 21 16 15 39 39 H 1.08994 * 109.50908 * 62.41272 * 21 16 15 40 40 H 1.09000 * 113.60697 * 334.56455 * 22 15 13 41 41 H 1.09000 * 113.61529 * 105.46758 * 22 15 13 42 42 H 1.08997 * 113.53461 * 270.81018 * 23 22 15 43 43 H 1.08999 * 113.66875 * 139.93422 * 23 22 15 44 44 H 1.09005 * 113.61679 * 220.09234 * 24 23 22 45 45 H 1.09001 * 113.61466 * 89.19004 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 7 3.3796 -1.2021 -0.0011 10 6 4.1122 -2.4708 -0.0011 11 6 5.6163 -2.1913 -0.0011 12 7 6.3489 -3.4601 -0.0017 13 6 7.6966 -3.4600 -0.0023 14 8 8.3030 -2.4137 -0.0941 15 6 8.4501 -4.7596 0.1173 16 7 9.9074 -4.5748 0.1319 17 6 10.3240 -3.7629 1.2846 18 6 11.8505 -3.6456 1.2942 19 8 12.2886 -3.0878 0.0523 20 6 11.9006 -3.8535 -1.0915 21 6 10.3747 -3.9729 -1.1254 22 6 7.9760 -5.8398 -0.8693 23 6 8.1440 -6.8497 0.2804 24 6 7.9333 -5.6699 1.2439 25 1 -0.4850 0.8401 0.0004 26 1 3.8646 -0.3621 -0.0007 27 1 3.8484 -3.0426 -0.8908 28 1 3.8492 -3.0423 0.8891 29 1 5.8797 -1.6197 0.8889 30 1 5.8797 -1.6197 -0.8910 31 1 5.8638 -4.3000 -0.0024 32 1 9.8831 -2.7690 1.2081 33 1 9.9898 -4.2402 2.2058 34 1 12.2907 -4.6343 1.4246 35 1 12.1605 -2.9975 2.1139 36 1 12.3422 -4.8481 -1.0305 37 1 12.2470 -3.3558 -1.9972 38 1 10.0774 -4.6035 -1.9633 39 1 9.9340 -2.9827 -1.2407 40 1 6.9425 -5.7132 -1.1916 41 1 8.6625 -6.0041 -1.6999 42 1 9.1418 -7.2851 0.3350 43 1 7.3519 -7.5971 0.3256 44 1 8.5854 -5.6972 2.1170 45 1 6.8881 -5.4968 1.5004 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001136105606.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:43:41 Heat of formation + Delta-G solvation = -29.016308 kcal Electronic energy + Delta-G solvation = -25026.442624 eV Core-core repulsion = 21466.553643 eV Total energy + Delta-G solvation = -3559.888981 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.35396 -38.97902 -37.93648 -36.03274 -34.61178 -33.66572 -31.46167 -31.43836 -28.72290 -27.61505 -26.37334 -25.12625 -23.80115 -23.19422 -21.58780 -21.14865 -20.89126 -19.20994 -18.10694 -17.41889 -16.71511 -16.37524 -15.84125 -15.44738 -15.37428 -15.18172 -14.97221 -14.65906 -14.41117 -14.03717 -13.81264 -13.76250 -13.55907 -12.96914 -12.68000 -12.51727 -12.11489 -11.79449 -11.73149 -11.67765 -11.54331 -11.26973 -11.15700 -11.01483 -10.88403 -10.76544 -10.56298 -10.28879 -10.20368 -9.84268 -9.66779 -9.09080 -8.93997 -8.38043 -7.35224 -5.84148 -3.21856 2.43382 3.08018 3.32470 3.35051 3.38739 3.42958 3.67824 4.17815 4.19976 4.45075 4.53569 4.56501 4.71682 4.72457 4.94850 4.96413 5.10555 5.14575 5.22982 5.27413 5.29243 5.36965 5.39477 5.42153 5.55268 5.58921 5.59379 5.60647 5.61468 5.72314 5.82149 5.87490 5.96237 5.96562 6.33081 6.51915 6.55055 6.61929 6.62286 6.93339 7.44484 7.88800 8.14566 8.33853 9.11213 9.83608 10.01726 11.33664 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.022768 B = 0.003210 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.497479 B = 8721.937342 C = 9493.915862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.008 3.992 3 Si 0.885 3.115 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.250 4.250 8 H 0.091 0.909 9 N -0.752 5.752 10 C 0.149 3.851 11 C 0.107 3.893 12 N -0.718 5.718 13 C 0.496 3.504 14 O -0.539 6.539 15 C 0.061 3.939 16 N -0.487 5.487 17 C 0.002 3.998 18 C 0.069 3.931 19 O -0.384 6.384 20 C 0.069 3.931 21 C 0.002 3.998 22 C -0.122 4.122 23 C -0.123 4.123 24 C -0.122 4.122 25 H 0.261 0.739 26 H 0.363 0.637 27 H 0.033 0.967 28 H 0.032 0.968 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.400 0.600 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.055 0.945 35 H 0.096 0.904 36 H 0.055 0.945 37 H 0.096 0.904 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.090 0.910 41 H 0.080 0.920 42 H 0.089 0.911 43 H 0.072 0.928 44 H 0.080 0.920 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.502 -15.509 0.615 28.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.188 4.188 3 Si 0.714 3.286 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.202 1.202 7 C -0.380 4.380 8 H 0.109 0.891 9 N -0.399 5.399 10 C 0.021 3.979 11 C -0.017 4.017 12 N -0.370 5.370 13 C 0.281 3.719 14 O -0.417 6.417 15 C -0.033 4.033 16 N -0.211 5.211 17 C -0.126 4.126 18 C -0.008 4.008 19 O -0.302 6.302 20 C -0.008 4.008 21 C -0.126 4.126 22 C -0.161 4.161 23 C -0.161 4.161 24 C -0.160 4.160 25 H 0.071 0.929 26 H 0.196 0.804 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.235 0.765 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.073 0.927 35 H 0.114 0.886 36 H 0.073 0.927 37 H 0.114 0.886 38 H 0.099 0.901 39 H 0.092 0.908 40 H 0.109 0.891 41 H 0.099 0.901 42 H 0.108 0.892 43 H 0.090 0.910 44 H 0.098 0.902 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 24.028 -15.111 0.600 28.391 hybrid contribution -0.397 1.475 -0.054 1.529 sum 23.631 -13.636 0.546 27.288 Atomic orbital electron populations 1.69694 1.05114 1.26041 1.56987 1.24670 0.95258 0.97315 1.01582 0.86550 0.79260 0.84791 0.77962 1.20881 1.21514 1.20246 1.19002 0.80187 0.94884 1.43905 0.89075 1.42535 1.04171 1.01816 1.91353 1.20721 0.87597 0.90291 0.99246 1.21608 0.92552 0.85201 1.02355 1.46007 1.06283 1.10106 1.74621 1.21521 0.82677 0.91565 0.76143 1.90648 1.67692 1.34033 1.49314 1.22462 0.88525 0.91272 1.01020 1.62535 1.07281 1.47905 1.03347 1.22970 0.96907 0.98828 0.93895 1.22610 0.92614 0.98856 0.86750 1.87993 1.76976 1.50863 1.14400 1.22608 0.93022 0.96039 0.89167 1.22971 0.96611 1.00916 0.92115 1.23054 1.01681 0.94192 0.97126 1.22747 1.02727 0.95892 0.94707 1.23024 1.01517 0.94860 0.96563 0.92887 0.80397 0.94928 0.94992 0.91478 0.91371 0.76539 0.90848 0.90064 0.92659 0.88577 0.92668 0.88587 0.90079 0.90780 0.89138 0.90128 0.89201 0.90956 0.90166 0.89034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.09 13.97 55.49 0.78 -28.32 16 2 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16 3 Si 0.88 22.19 27.74 -169.99 -4.71 17.47 16 4 H -0.28 -7.04 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.28 -6.58 6.52 56.52 0.37 -6.21 16 7 C -0.25 -7.04 10.47 -15.06 -0.16 -7.20 16 8 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 9 N -0.75 -17.82 5.41 -59.91 -0.32 -18.14 16 10 C 0.15 2.74 6.37 -4.04 -0.03 2.72 16 11 C 0.11 1.70 5.79 -4.04 -0.02 1.68 16 12 N -0.72 -9.06 5.14 -60.29 -0.31 -9.37 16 13 C 0.50 6.60 6.56 -10.99 -0.07 6.53 16 14 O -0.54 -9.17 12.23 5.56 0.07 -9.10 16 15 C 0.06 0.61 0.40 -131.93 -0.05 0.55 16 16 N -0.49 -4.98 4.51 -219.04 -0.99 -5.97 16 17 C 0.00 0.02 5.21 -3.71 -0.02 0.00 16 18 C 0.07 0.66 7.01 37.21 0.26 0.93 16 19 O -0.38 -4.56 10.83 -35.23 -0.38 -4.94 16 20 C 0.07 0.66 7.01 37.21 0.26 0.92 16 21 C 0.00 0.02 5.21 -3.71 -0.02 0.00 16 22 C -0.12 -0.95 7.04 -25.83 -0.18 -1.13 16 23 C -0.12 -0.81 8.00 -25.83 -0.21 -1.01 16 24 C -0.12 -0.95 7.04 -25.92 -0.18 -1.14 16 25 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 26 H 0.36 8.50 5.53 -40.82 -0.23 8.28 16 27 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 31 H 0.40 3.99 6.81 -40.82 -0.28 3.72 16 32 H 0.07 1.04 5.88 -51.93 -0.31 0.73 16 33 H 0.08 0.76 6.82 -51.93 -0.35 0.40 16 34 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 35 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.08 0.74 6.77 -51.93 -0.35 0.39 16 39 H 0.07 1.04 5.87 -51.93 -0.30 0.73 16 40 H 0.09 0.65 7.20 -51.93 -0.37 0.28 16 41 H 0.08 0.61 6.87 -51.93 -0.36 0.25 16 42 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 44 H 0.08 0.62 6.93 -51.93 -0.36 0.26 16 45 H 0.09 0.68 7.25 -51.93 -0.38 0.30 16 LS Contribution 345.88 15.07 5.21 5.21 Total: -1.00 -33.84 345.88 -8.28 -42.13 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -7.10 Total: 8.05 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: -0.52 Total: 2.98 kcal Atomic # 7 Polarization: -60.95 SS G_CDS: -0.85 Total: -61.80 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: -0.31 Total: -14.04 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.71 Total: 17.47 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.84 -8.28 -42.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136105606.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.109 kcal (2) G-P(sol) polarization free energy of solvation -33.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds