Wall clock time and date at job start Fri Apr 10 2020 17:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86806 * 120.00176 * 2 1 4 4 H 1.48506 * 109.46975 * 269.99945 * 3 2 1 5 5 H 1.48495 * 109.47054 * 29.99850 * 3 2 1 6 6 H 1.48498 * 109.47132 * 150.00234 * 3 2 1 7 7 C 1.38815 * 120.00116 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99606 * 359.97438 * 7 2 1 9 9 N 1.36938 * 119.99975 * 179.97438 * 7 2 1 10 10 C 1.46502 * 120.00099 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47280 * 180.02562 * 10 9 7 12 12 N 1.46508 * 109.46967 * 180.02562 * 11 10 9 13 13 C 1.34775 * 119.99580 * 179.97438 * 12 11 10 14 14 O 1.21279 * 120.00550 * 354.99083 * 13 12 11 15 15 C 1.50699 * 119.99496 * 174.71139 * 13 12 11 16 16 N 1.46905 * 112.85061 * 181.36171 * 15 13 12 17 17 C 1.47016 * 110.99834 * 61.42884 * 16 15 13 18 18 C 1.53099 * 109.25392 * 177.61297 * 17 16 15 19 19 O 1.43014 * 109.26051 * 56.84550 * 18 17 16 20 20 C 1.43009 * 113.73957 * 301.32880 * 19 18 17 21 21 C 1.47017 * 110.99518 * 297.79682 * 16 15 13 22 22 C 1.53786 * 113.61768 * 50.16547 * 15 13 12 23 23 C 1.53953 * 87.02072 * 220.04905 * 22 15 13 24 24 C 1.53781 * 87.11215 * 25.36112 * 23 22 15 25 25 H 0.97002 * 120.00051 * 359.97438 * 1 2 3 26 26 H 0.97005 * 120.00351 * 0.02562 * 9 7 2 27 27 H 1.09000 * 109.46775 * 59.99813 * 10 9 7 28 28 H 1.09000 * 109.47161 * 300.00321 * 10 9 7 29 29 H 1.09000 * 109.47479 * 60.00109 * 11 10 9 30 30 H 1.09000 * 109.47175 * 300.00177 * 11 10 9 31 31 H 0.96995 * 119.99798 * 0.02562 * 12 11 10 32 32 H 1.08996 * 109.50527 * 297.54384 * 17 16 15 33 33 H 1.09000 * 109.50746 * 57.67675 * 17 16 15 34 34 H 1.09007 * 109.50477 * 296.90986 * 18 17 16 35 35 H 1.08998 * 109.50348 * 176.78846 * 18 17 16 36 36 H 1.08991 * 109.50762 * 298.73667 * 20 19 18 37 37 H 1.08998 * 109.50524 * 178.60623 * 20 19 18 38 38 H 1.09000 * 109.50320 * 302.32347 * 21 16 15 39 39 H 1.08994 * 109.50908 * 62.41272 * 21 16 15 40 40 H 1.09000 * 113.60697 * 334.56455 * 22 15 13 41 41 H 1.09000 * 113.61529 * 105.46758 * 22 15 13 42 42 H 1.08997 * 113.53461 * 270.81018 * 23 22 15 43 43 H 1.08999 * 113.66875 * 139.93422 * 23 22 15 44 44 H 1.09005 * 113.61679 * 220.09234 * 24 23 22 45 45 H 1.09001 * 113.61466 * 89.19004 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 7 3.3796 -1.2021 -0.0011 10 6 4.1122 -2.4708 -0.0011 11 6 5.6163 -2.1913 -0.0011 12 7 6.3489 -3.4601 -0.0017 13 6 7.6966 -3.4600 -0.0023 14 8 8.3030 -2.4137 -0.0941 15 6 8.4501 -4.7596 0.1173 16 7 9.9074 -4.5748 0.1319 17 6 10.3240 -3.7629 1.2846 18 6 11.8505 -3.6456 1.2942 19 8 12.2886 -3.0878 0.0523 20 6 11.9006 -3.8535 -1.0915 21 6 10.3747 -3.9729 -1.1254 22 6 7.9760 -5.8398 -0.8693 23 6 8.1440 -6.8497 0.2804 24 6 7.9333 -5.6699 1.2439 25 1 -0.4850 0.8401 0.0004 26 1 3.8646 -0.3621 -0.0007 27 1 3.8484 -3.0426 -0.8908 28 1 3.8492 -3.0423 0.8891 29 1 5.8797 -1.6197 0.8889 30 1 5.8797 -1.6197 -0.8910 31 1 5.8638 -4.3000 -0.0024 32 1 9.8831 -2.7690 1.2081 33 1 9.9898 -4.2402 2.2058 34 1 12.2907 -4.6343 1.4246 35 1 12.1605 -2.9975 2.1139 36 1 12.3422 -4.8481 -1.0305 37 1 12.2470 -3.3558 -1.9972 38 1 10.0774 -4.6035 -1.9633 39 1 9.9340 -2.9827 -1.2407 40 1 6.9425 -5.7132 -1.1916 41 1 8.6625 -6.0041 -1.6999 42 1 9.1418 -7.2851 0.3350 43 1 7.3519 -7.5971 0.3256 44 1 8.5854 -5.6972 2.1170 45 1 6.8881 -5.4968 1.5004 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001136105606.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:43:40 Heat of formation + Delta-G solvation = -55.979063 kcal Electronic energy + Delta-G solvation = -25027.611817 eV Core-core repulsion = 21466.553643 eV Total energy + Delta-G solvation = -3561.058174 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.21654 -39.88539 -38.80248 -37.52674 -35.89045 -34.85522 -33.44248 -32.21983 -30.18422 -28.54022 -27.00313 -26.27177 -24.74977 -24.56784 -23.18507 -22.10850 -21.69811 -20.13638 -19.83192 -18.60727 -17.56910 -17.21151 -17.01143 -16.65324 -16.40797 -16.09291 -15.99193 -15.84258 -15.66142 -15.45984 -15.29971 -14.80942 -14.50982 -14.46294 -13.65414 -13.47945 -13.35077 -13.15013 -12.84189 -12.74337 -12.66331 -12.52543 -12.44006 -12.13813 -12.12182 -11.86208 -11.77208 -11.48510 -11.21123 -11.19949 -11.07196 -10.64449 -10.20040 -9.40357 -9.31062 -8.08379 -5.43861 1.36079 1.37507 1.42479 1.44643 1.99972 2.43364 2.54726 2.94181 3.23474 3.45449 3.54389 3.58253 3.77279 3.88367 3.93983 3.95052 3.98797 4.11955 4.23431 4.32188 4.33702 4.38990 4.46739 4.48767 4.65354 4.71434 4.80281 4.86905 4.90765 4.93013 5.02393 5.03340 5.06068 5.12625 5.20821 5.33319 5.40734 5.69199 5.78670 5.83777 6.14638 6.17834 6.44363 6.99570 7.12973 7.74058 7.91329 9.12412 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.022768 B = 0.003210 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.497479 B = 8721.937342 C = 9493.915862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.979 5.979 2 C -0.058 4.058 3 Si 0.951 3.049 4 H -0.278 1.278 5 H -0.292 1.292 6 H -0.257 1.257 7 C -0.238 4.238 8 H 0.065 0.935 9 N -0.759 5.759 10 C 0.152 3.848 11 C 0.124 3.876 12 N -0.708 5.708 13 C 0.492 3.508 14 O -0.579 6.579 15 C 0.054 3.946 16 N -0.476 5.476 17 C 0.004 3.996 18 C 0.068 3.932 19 O -0.410 6.410 20 C 0.068 3.932 21 C 0.003 3.997 22 C -0.120 4.120 23 C -0.109 4.109 24 C -0.119 4.119 25 H 0.260 0.740 26 H 0.365 0.635 27 H 0.042 0.958 28 H 0.042 0.958 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.415 0.585 32 H 0.035 0.965 33 H 0.096 0.904 34 H 0.074 0.926 35 H 0.105 0.895 36 H 0.074 0.926 37 H 0.106 0.894 38 H 0.097 0.903 39 H 0.036 0.964 40 H 0.097 0.903 41 H 0.084 0.916 42 H 0.092 0.908 43 H 0.090 0.910 44 H 0.082 0.918 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.380 -17.240 0.768 30.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.629 5.629 2 C -0.250 4.250 3 Si 0.778 3.222 4 H -0.204 1.204 5 H -0.219 1.219 6 H -0.182 1.182 7 C -0.369 4.369 8 H 0.083 0.917 9 N -0.406 5.406 10 C 0.025 3.975 11 C -0.001 4.001 12 N -0.361 5.361 13 C 0.279 3.721 14 O -0.459 6.459 15 C -0.040 4.040 16 N -0.199 5.199 17 C -0.124 4.124 18 C -0.009 4.009 19 O -0.329 6.329 20 C -0.009 4.009 21 C -0.125 4.125 22 C -0.158 4.158 23 C -0.146 4.146 24 C -0.157 4.157 25 H 0.069 0.931 26 H 0.198 0.802 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.252 0.748 32 H 0.054 0.946 33 H 0.114 0.886 34 H 0.092 0.908 35 H 0.123 0.877 36 H 0.092 0.908 37 H 0.124 0.876 38 H 0.115 0.885 39 H 0.055 0.945 40 H 0.116 0.884 41 H 0.102 0.898 42 H 0.111 0.889 43 H 0.108 0.892 44 H 0.101 0.899 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 25.945 -16.905 0.755 30.975 hybrid contribution -0.973 1.918 -0.109 2.153 sum 24.971 -14.987 0.647 29.131 Atomic orbital electron populations 1.69856 1.06969 1.26857 1.59186 1.25457 0.96087 1.01103 1.02320 0.85479 0.78570 0.79993 0.78172 1.20400 1.21850 1.18161 1.19011 0.82117 0.93846 1.41938 0.91668 1.42571 1.02841 1.03891 1.91278 1.20823 0.88530 0.88250 0.99880 1.21194 0.91138 0.86513 1.01285 1.45852 1.06254 1.09576 1.74440 1.22302 0.82515 0.92441 0.74861 1.90650 1.68431 1.35892 1.50969 1.22750 0.87917 0.89788 1.03568 1.62634 1.07407 1.46918 1.02951 1.22941 0.97657 0.97037 0.94807 1.22736 0.91772 1.00000 0.86366 1.87957 1.77265 1.52123 1.15536 1.22739 0.92228 0.96921 0.89007 1.22946 0.97322 0.99213 0.92972 1.23133 1.02082 0.93277 0.97292 1.22687 1.03559 0.95457 0.92889 1.23098 1.01777 0.94596 0.96275 0.93114 0.80164 0.94007 0.93961 0.92542 0.92607 0.74773 0.94629 0.88584 0.90800 0.87668 0.90812 0.87631 0.88492 0.94540 0.88433 0.89764 0.88909 0.89179 0.89895 0.88478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.23 13.97 21.65 0.30 -61.92 16 2 C -0.06 -3.38 5.50 84.86 0.47 -2.91 16 3 Si 0.95 45.80 27.74 68.60 1.90 47.71 16 4 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 5 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 6 H -0.26 -11.40 6.52 99.48 0.65 -10.75 16 7 C -0.24 -13.45 10.47 84.03 0.88 -12.57 16 8 H 0.07 3.95 8.06 -2.91 -0.02 3.93 16 9 N -0.76 -35.26 5.41 -343.46 -1.86 -37.11 16 10 C 0.15 5.37 6.37 86.38 0.55 5.92 16 11 C 0.12 3.83 5.79 86.38 0.50 4.33 16 12 N -0.71 -16.92 5.14 -463.06 -2.38 -19.30 16 13 C 0.49 12.74 6.56 87.66 0.57 13.32 16 14 O -0.58 -20.08 12.23 -3.03 -0.04 -20.12 16 15 C 0.05 0.97 0.40 3.31 0.00 0.97 16 16 N -0.48 -9.05 4.51 -846.92 -3.82 -12.87 16 17 C 0.00 0.07 5.21 86.31 0.45 0.52 16 18 C 0.07 1.23 7.01 72.02 0.50 1.73 16 19 O -0.41 -9.44 10.83 -148.98 -1.61 -11.05 16 20 C 0.07 1.22 7.01 72.02 0.50 1.72 16 21 C 0.00 0.07 5.21 86.31 0.45 0.52 16 22 C -0.12 -1.52 7.04 31.18 0.22 -1.30 16 23 C -0.11 -1.04 8.00 31.18 0.25 -0.79 16 24 C -0.12 -1.55 7.04 31.12 0.22 -1.33 16 25 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 26 H 0.37 16.58 5.53 -92.70 -0.51 16.07 16 27 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.41 7.36 6.81 -92.71 -0.63 6.72 16 32 H 0.04 1.03 5.88 -2.39 -0.01 1.02 16 33 H 0.10 1.65 6.82 -2.39 -0.02 1.63 16 34 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 35 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.10 1.63 6.77 -2.39 -0.02 1.61 16 39 H 0.04 1.05 5.87 -2.39 -0.01 1.03 16 40 H 0.10 1.11 7.20 -2.39 -0.02 1.09 16 41 H 0.08 1.03 6.87 -2.39 -0.02 1.02 16 42 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 44 H 0.08 1.05 6.93 -2.38 -0.02 1.04 16 45 H 0.10 1.16 7.25 -2.39 -0.02 1.14 16 Total: -1.00 -74.38 345.88 -2.13 -76.51 By element: Atomic # 1 Polarization: 28.20 SS G_CDS: -0.20 Total: 28.01 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: 5.57 Total: 10.15 kcal Atomic # 7 Polarization: -123.45 SS G_CDS: -7.76 Total: -131.21 kcal Atomic # 8 Polarization: -29.51 SS G_CDS: -1.65 Total: -31.16 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 1.90 Total: 47.71 kcal Total: -74.38 -2.13 -76.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136105606.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.532 kcal (2) G-P(sol) polarization free energy of solvation -74.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds