Wall clock time and date at job start Fri Apr 10 2020 17:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47294 * 2 1 4 4 N 1.46503 * 109.47307 * 120.00625 * 2 1 3 5 5 C 1.34777 * 119.99808 * 154.99635 * 4 2 1 6 6 O 1.21344 * 119.99993 * 0.27619 * 5 4 2 7 7 C 1.49447 * 119.99633 * 179.97438 * 5 4 2 8 8 O 1.21349 * 120.00303 * 353.79059 * 7 5 4 9 9 N 1.34773 * 120.00166 * 173.79196 * 7 5 4 10 10 C 1.47080 * 120.88519 * 181.26017 * 9 7 5 11 11 C 1.53692 * 108.27634 * 128.75705 * 10 9 7 12 12 N 1.46899 * 109.25899 * 54.08678 * 11 10 9 13 13 C 1.46901 * 111.00251 * 172.60849 * 12 11 10 14 14 C 1.53000 * 109.46837 * 294.29857 * 13 12 11 15 15 C 1.50697 * 109.46897 * 179.97438 * 14 13 12 16 16 H 1.08001 * 120.00462 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00013 * 180.02562 * 15 14 13 18 18 N 1.31519 * 120.00271 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 119.99987 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.47355 * 90.00467 * 19 17 15 21 21 H 1.48503 * 109.47360 * 210.00238 * 19 17 15 22 22 H 1.48499 * 109.47237 * 330.00390 * 19 17 15 23 23 C 1.46903 * 111.26419 * 296.75508 * 12 11 10 24 24 C 1.47085 * 120.88030 * 1.54041 * 9 7 5 25 25 H 1.09011 * 109.46849 * 299.99625 * 1 2 3 26 26 H 1.09000 * 109.47650 * 59.99426 * 1 2 3 27 27 H 1.09001 * 109.47242 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46703 * 240.00148 * 2 1 3 29 29 H 1.09011 * 109.46866 * 60.00385 * 3 2 1 30 30 H 1.09000 * 109.46925 * 180.02562 * 3 2 1 31 31 H 1.08992 * 109.47269 * 300.00551 * 3 2 1 32 32 H 0.96998 * 119.99601 * 335.00005 * 4 2 1 33 33 H 1.09005 * 109.62900 * 248.52710 * 10 9 7 34 34 H 1.09001 * 109.62532 * 9.10489 * 10 9 7 35 35 H 1.09003 * 109.64901 * 294.07640 * 11 10 9 36 36 H 1.09008 * 109.42017 * 173.94741 * 11 10 9 37 37 H 1.09001 * 109.47226 * 54.29771 * 13 12 11 38 38 H 1.08994 * 109.47236 * 174.29972 * 13 12 11 39 39 H 1.08992 * 109.47227 * 299.99740 * 14 13 12 40 40 H 1.09004 * 109.47106 * 60.00012 * 14 13 12 41 41 H 0.97001 * 120.00242 * 179.97438 * 18 17 15 42 42 H 1.08998 * 109.49485 * 303.14357 * 23 12 11 43 43 H 1.08998 * 109.51132 * 183.08266 * 23 12 11 44 44 H 1.08997 * 109.62394 * 350.89765 * 24 9 7 45 45 H 1.09003 * 109.62635 * 111.47352 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 3.2403 -1.2593 1.1941 6 8 3.9380 -1.1948 0.2034 7 6 3.7387 -1.9635 2.4145 8 8 3.0938 -1.9274 3.4418 9 7 4.9045 -2.6386 2.3742 10 6 5.3997 -3.3613 3.5556 11 6 5.7457 -4.7975 3.1319 12 7 6.6750 -4.7568 1.9949 13 6 7.1684 -6.1017 1.6697 14 6 8.0206 -6.6259 2.8273 15 6 8.5263 -8.0058 2.4940 16 1 8.2656 -8.4634 1.5511 17 6 9.3210 -8.6846 3.3932 18 7 9.7628 -9.8887 3.1022 19 14 9.7714 -7.8936 5.0244 20 1 8.7492 -8.2435 6.0432 21 1 11.0997 -8.3900 5.4653 22 1 9.8233 -6.4185 4.8616 23 6 6.0547 -4.1258 0.8222 24 6 5.7183 -2.6671 1.1493 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.6767 1.9563 0.8901 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.4622 -0.7389 1.9894 33 1 6.2904 -2.8654 3.9414 34 1 4.6264 -3.3808 4.3235 35 1 4.8363 -5.3227 2.8399 36 1 6.2150 -5.3185 3.9666 37 1 6.3225 -6.7702 1.5095 38 1 7.7733 -6.0576 0.7641 39 1 8.8665 -5.9574 2.9875 40 1 7.4157 -6.6699 3.7330 41 1 10.3222 -10.3662 3.7347 42 1 5.1410 -4.6603 0.5623 43 1 6.7475 -4.1597 -0.0185 44 1 5.1558 -2.2274 0.3257 45 1 6.6391 -2.1057 1.3084 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053434625.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:44:46 Heat of formation + Delta-G solvation = -48.598868 kcal Electronic energy + Delta-G solvation = -24489.050703 eV Core-core repulsion = 20928.312559 eV Total energy + Delta-G solvation = -3560.738145 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.17009 -39.23101 -37.99580 -36.69570 -34.92708 -32.84744 -31.93754 -31.12482 -30.41496 -27.71705 -27.48643 -25.26100 -23.84802 -23.36190 -21.67167 -21.02093 -20.32113 -19.58315 -17.85605 -17.32858 -16.81303 -16.42324 -16.02037 -15.33591 -15.04285 -14.97270 -14.64677 -14.48030 -14.34943 -13.99476 -13.86062 -13.53434 -13.37785 -12.90748 -12.69080 -12.66807 -12.56072 -12.30805 -11.88028 -11.74793 -11.56639 -11.47657 -11.15544 -11.07504 -11.06288 -10.87359 -9.99144 -9.96279 -9.80283 -9.70836 -9.22176 -9.17448 -8.86756 -8.53235 -7.90944 -6.04890 -4.03289 1.18863 2.08470 2.97929 3.24690 3.31557 3.39489 3.44803 4.04554 4.28138 4.35432 4.45731 4.54153 4.73796 4.98602 5.08118 5.08848 5.13815 5.27426 5.28906 5.32251 5.34388 5.41527 5.47011 5.57080 5.60973 5.71186 5.79925 5.91261 5.99596 6.05226 6.10742 6.18374 6.31961 6.35362 6.72666 6.75145 7.04152 7.16868 7.25456 7.50452 7.53779 7.58587 7.76666 7.82743 8.52072 8.99041 9.57368 11.08413 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.037734 B = 0.002768 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.861849 B =10112.005770 C =10424.651581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.133 3.867 3 C -0.165 4.165 4 N -0.696 5.696 5 C 0.514 3.486 6 O -0.508 6.508 7 C 0.503 3.497 8 O -0.532 6.532 9 N -0.573 5.573 10 C 0.111 3.889 11 C 0.040 3.960 12 N -0.543 5.543 13 C 0.071 3.929 14 C -0.007 4.007 15 C -0.522 4.522 16 H 0.070 0.930 17 C 0.067 3.933 18 N -0.904 5.904 19 Si 0.880 3.120 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.263 1.263 23 C 0.042 3.958 24 C 0.058 3.942 25 H 0.063 0.937 26 H 0.076 0.924 27 H 0.064 0.936 28 H 0.094 0.906 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.412 0.588 33 H 0.082 0.918 34 H 0.095 0.905 35 H 0.035 0.965 36 H 0.098 0.902 37 H 0.026 0.974 38 H 0.069 0.931 39 H 0.025 0.975 40 H 0.011 0.989 41 H 0.263 0.737 42 H 0.031 0.969 43 H 0.087 0.913 44 H 0.153 0.847 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.920 22.450 -5.218 29.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.029 3.971 3 C -0.223 4.223 4 N -0.349 5.349 5 C 0.296 3.704 6 O -0.385 6.385 7 C 0.285 3.715 8 O -0.409 6.409 9 N -0.305 5.305 10 C -0.011 4.011 11 C -0.089 4.089 12 N -0.268 5.268 13 C -0.055 4.055 14 C -0.045 4.045 15 C -0.560 4.560 16 H 0.089 0.911 17 C -0.134 4.134 18 N -0.542 5.542 19 Si 0.707 3.293 20 H -0.204 1.204 21 H -0.214 1.214 22 H -0.187 1.187 23 C -0.087 4.087 24 C -0.063 4.063 25 H 0.082 0.918 26 H 0.095 0.905 27 H 0.083 0.917 28 H 0.112 0.888 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.249 0.751 33 H 0.100 0.900 34 H 0.113 0.887 35 H 0.053 0.947 36 H 0.116 0.884 37 H 0.045 0.955 38 H 0.088 0.912 39 H 0.044 0.956 40 H 0.029 0.971 41 H 0.073 0.927 42 H 0.049 0.951 43 H 0.105 0.895 44 H 0.169 0.831 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -17.256 22.649 -5.194 28.943 hybrid contribution -0.478 -0.418 1.063 1.238 sum -17.734 22.231 -4.131 28.736 Atomic orbital electron populations 1.22096 0.93549 1.03045 1.03280 1.21120 0.94488 0.93279 0.88198 1.22201 1.02348 0.95327 1.02469 1.45963 1.16898 1.54407 1.17656 1.20294 0.82402 0.79447 0.88264 1.90359 1.54465 1.58437 1.35275 1.19942 0.82162 0.80954 0.88444 1.90744 1.56735 1.61338 1.32107 1.48149 1.19583 1.47844 1.14957 1.22075 0.99966 0.91945 0.87073 1.22582 0.95045 0.95009 0.96233 1.62101 1.36191 1.23137 1.05352 1.22139 0.97655 0.85097 1.00643 1.19581 0.95107 0.96521 0.93277 1.21071 1.30891 0.99025 1.05035 0.91147 1.25005 0.95395 0.94643 0.98365 1.69915 1.35533 1.12334 1.36464 0.86766 0.77840 0.80548 0.84109 1.20376 1.21424 1.18695 1.22463 0.97999 0.94121 0.94119 1.23395 0.96935 0.97617 0.88330 0.91763 0.90513 0.91688 0.88836 0.92217 0.91823 0.91199 0.75117 0.89980 0.88719 0.94699 0.88417 0.95545 0.91210 0.95621 0.97130 0.92719 0.95079 0.89464 0.83099 0.90643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.68 9.38 37.16 0.35 -0.33 16 2 C 0.13 0.86 3.18 -67.93 -0.22 0.64 16 3 C -0.17 -0.99 9.48 37.16 0.35 -0.64 16 4 N -0.70 -5.77 5.07 -54.24 -0.27 -6.04 16 5 C 0.51 5.76 7.77 -11.59 -0.09 5.67 16 6 O -0.51 -6.30 12.70 5.50 0.07 -6.23 16 7 C 0.50 6.59 7.77 -11.59 -0.09 6.50 16 8 O -0.53 -7.76 15.95 5.50 0.09 -7.67 16 9 N -0.57 -7.72 3.00 -172.69 -0.52 -8.24 16 10 C 0.11 1.53 6.62 -3.37 -0.02 1.51 16 11 C 0.04 0.63 5.48 -3.47 -0.02 0.61 16 12 N -0.54 -9.23 4.63 -234.03 -1.08 -10.31 16 13 C 0.07 1.43 4.90 -3.82 -0.02 1.41 16 14 C -0.01 -0.17 3.97 -27.88 -0.11 -0.28 16 15 C -0.52 -14.85 9.66 -34.44 -0.33 -15.18 16 16 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 17 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 18 N -0.90 -27.93 13.96 55.43 0.77 -27.16 16 19 Si 0.88 21.78 27.47 -169.99 -4.67 17.11 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.26 -6.26 6.54 56.52 0.37 -5.90 16 23 C 0.04 0.60 5.62 -3.70 -0.02 0.58 16 24 C 0.06 0.75 6.35 -3.60 -0.02 0.73 16 25 H 0.06 0.23 8.14 -51.92 -0.42 -0.19 16 26 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 27 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.09 0.70 7.58 -51.93 -0.39 0.30 16 29 H 0.06 0.33 8.14 -51.92 -0.42 -0.09 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.41 3.01 8.09 -40.82 -0.33 2.68 16 33 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 34 H 0.09 1.26 7.07 -51.93 -0.37 0.90 16 35 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.10 1.62 6.16 -51.92 -0.32 1.30 16 37 H 0.03 0.54 8.12 -51.93 -0.42 0.12 16 38 H 0.07 1.39 7.97 -51.93 -0.41 0.98 16 39 H 0.03 0.63 7.20 -51.93 -0.37 0.25 16 40 H 0.01 0.25 5.83 -51.93 -0.30 -0.06 16 41 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 42 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.09 1.17 7.99 -51.93 -0.41 0.75 16 44 H 0.15 1.91 3.92 -56.54 -0.22 1.69 16 45 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 356.84 15.07 5.38 5.38 Total: -1.00 -32.40 356.84 -7.95 -40.35 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -7.37 Total: -0.24 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: -0.34 Total: 3.07 kcal Atomic # 7 Polarization: -50.66 SS G_CDS: -1.10 Total: -51.76 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: 0.16 Total: -13.90 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.67 Total: 17.11 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.40 -7.95 -40.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053434625.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.253 kcal (2) G-P(sol) polarization free energy of solvation -32.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds