Wall clock time and date at job start Fri Apr 10 2020 17:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47294 * 2 1 4 4 N 1.46503 * 109.47307 * 120.00625 * 2 1 3 5 5 C 1.34777 * 119.99808 * 154.99635 * 4 2 1 6 6 O 1.21344 * 119.99993 * 0.27619 * 5 4 2 7 7 C 1.49447 * 119.99633 * 179.97438 * 5 4 2 8 8 O 1.21349 * 120.00303 * 353.79059 * 7 5 4 9 9 N 1.34773 * 120.00166 * 173.79196 * 7 5 4 10 10 C 1.47080 * 120.88519 * 181.26017 * 9 7 5 11 11 C 1.53692 * 108.27634 * 128.75705 * 10 9 7 12 12 N 1.46899 * 109.25899 * 54.08678 * 11 10 9 13 13 C 1.46901 * 111.00251 * 172.60849 * 12 11 10 14 14 C 1.53000 * 109.46837 * 294.29857 * 13 12 11 15 15 C 1.50697 * 109.46897 * 179.97438 * 14 13 12 16 16 H 1.08001 * 120.00462 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00013 * 180.02562 * 15 14 13 18 18 N 1.31519 * 120.00271 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 119.99987 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.47355 * 90.00467 * 19 17 15 21 21 H 1.48503 * 109.47360 * 210.00238 * 19 17 15 22 22 H 1.48499 * 109.47237 * 330.00390 * 19 17 15 23 23 C 1.46903 * 111.26419 * 296.75508 * 12 11 10 24 24 C 1.47085 * 120.88030 * 1.54041 * 9 7 5 25 25 H 1.09011 * 109.46849 * 299.99625 * 1 2 3 26 26 H 1.09000 * 109.47650 * 59.99426 * 1 2 3 27 27 H 1.09001 * 109.47242 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46703 * 240.00148 * 2 1 3 29 29 H 1.09011 * 109.46866 * 60.00385 * 3 2 1 30 30 H 1.09000 * 109.46925 * 180.02562 * 3 2 1 31 31 H 1.08992 * 109.47269 * 300.00551 * 3 2 1 32 32 H 0.96998 * 119.99601 * 335.00005 * 4 2 1 33 33 H 1.09005 * 109.62900 * 248.52710 * 10 9 7 34 34 H 1.09001 * 109.62532 * 9.10489 * 10 9 7 35 35 H 1.09003 * 109.64901 * 294.07640 * 11 10 9 36 36 H 1.09008 * 109.42017 * 173.94741 * 11 10 9 37 37 H 1.09001 * 109.47226 * 54.29771 * 13 12 11 38 38 H 1.08994 * 109.47236 * 174.29972 * 13 12 11 39 39 H 1.08992 * 109.47227 * 299.99740 * 14 13 12 40 40 H 1.09004 * 109.47106 * 60.00012 * 14 13 12 41 41 H 0.97001 * 120.00242 * 179.97438 * 18 17 15 42 42 H 1.08998 * 109.49485 * 303.14357 * 23 12 11 43 43 H 1.08998 * 109.51132 * 183.08266 * 23 12 11 44 44 H 1.08997 * 109.62394 * 350.89765 * 24 9 7 45 45 H 1.09003 * 109.62635 * 111.47352 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 3.2403 -1.2593 1.1941 6 8 3.9380 -1.1948 0.2034 7 6 3.7387 -1.9635 2.4145 8 8 3.0938 -1.9274 3.4418 9 7 4.9045 -2.6386 2.3742 10 6 5.3997 -3.3613 3.5556 11 6 5.7457 -4.7975 3.1319 12 7 6.6750 -4.7568 1.9949 13 6 7.1684 -6.1017 1.6697 14 6 8.0206 -6.6259 2.8273 15 6 8.5263 -8.0058 2.4940 16 1 8.2656 -8.4634 1.5511 17 6 9.3210 -8.6846 3.3932 18 7 9.7628 -9.8887 3.1022 19 14 9.7714 -7.8936 5.0244 20 1 8.7492 -8.2435 6.0432 21 1 11.0997 -8.3900 5.4653 22 1 9.8233 -6.4185 4.8616 23 6 6.0547 -4.1258 0.8222 24 6 5.7183 -2.6671 1.1493 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.6767 1.9563 0.8901 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.4622 -0.7389 1.9894 33 1 6.2904 -2.8654 3.9414 34 1 4.6264 -3.3808 4.3235 35 1 4.8363 -5.3227 2.8399 36 1 6.2150 -5.3185 3.9666 37 1 6.3225 -6.7702 1.5095 38 1 7.7733 -6.0576 0.7641 39 1 8.8665 -5.9574 2.9875 40 1 7.4157 -6.6699 3.7330 41 1 10.3222 -10.3662 3.7347 42 1 5.1410 -4.6603 0.5623 43 1 6.7475 -4.1597 -0.0185 44 1 5.1558 -2.2274 0.3257 45 1 6.6391 -2.1057 1.3084 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000053434625.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:44:44 Heat of formation + Delta-G solvation = -72.727521 kcal Electronic energy + Delta-G solvation = -24490.097000 eV Core-core repulsion = 20928.312559 eV Total energy + Delta-G solvation = -3561.784442 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.12325 -40.22822 -39.17695 -37.45536 -36.23742 -34.83655 -32.58957 -32.37763 -32.11161 -28.89192 -28.11424 -26.46968 -25.39414 -24.50628 -22.66248 -21.93623 -21.76603 -20.74653 -19.13632 -18.67181 -18.20328 -17.36910 -16.95908 -16.53074 -16.26415 -16.14888 -15.81886 -15.76311 -15.47953 -15.21190 -14.99829 -14.82001 -14.64608 -14.01490 -13.85604 -13.69538 -13.42801 -13.09265 -13.06659 -12.93233 -12.85125 -12.36476 -12.33867 -12.28361 -12.18865 -11.94803 -11.82397 -11.74481 -11.61369 -11.37639 -10.75501 -10.43673 -10.18235 -9.97944 -9.28352 -8.29548 -6.33918 0.24437 1.19726 1.36950 1.39622 1.52401 2.02626 2.34839 2.37096 2.95185 3.06135 3.18419 3.83100 3.89451 3.93704 4.04891 4.09680 4.22225 4.27869 4.29088 4.45513 4.50234 4.59496 4.62671 4.71335 4.74985 4.82726 4.84983 4.91871 4.94489 4.98707 5.06181 5.15508 5.25261 5.26124 5.32484 5.44276 5.49208 5.62660 5.89194 6.04023 6.12837 6.19468 6.29057 6.61249 6.73830 6.86197 7.30810 8.87077 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.037734 B = 0.002768 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.861849 B =10112.005770 C =10424.651581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.129 3.871 3 C -0.162 4.162 4 N -0.682 5.682 5 C 0.515 3.485 6 O -0.523 6.523 7 C 0.502 3.498 8 O -0.548 6.548 9 N -0.578 5.578 10 C 0.118 3.882 11 C 0.040 3.960 12 N -0.545 5.545 13 C 0.084 3.916 14 C 0.000 4.000 15 C -0.533 4.533 16 H 0.031 0.969 17 C 0.005 3.995 18 N -0.951 5.951 19 Si 0.952 3.048 20 H -0.266 1.266 21 H -0.285 1.285 22 H -0.245 1.245 23 C 0.042 3.958 24 C 0.068 3.932 25 H 0.073 0.927 26 H 0.092 0.908 27 H 0.062 0.938 28 H 0.084 0.916 29 H 0.066 0.934 30 H 0.042 0.958 31 H 0.087 0.913 32 H 0.418 0.582 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.030 0.970 36 H 0.090 0.910 37 H 0.016 0.984 38 H 0.067 0.933 39 H 0.024 0.976 40 H 0.019 0.981 41 H 0.266 0.734 42 H 0.028 0.972 43 H 0.097 0.903 44 H 0.160 0.840 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.134 25.001 -4.525 31.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.026 3.974 3 C -0.220 4.220 4 N -0.335 5.335 5 C 0.296 3.704 6 O -0.402 6.402 7 C 0.285 3.715 8 O -0.427 6.427 9 N -0.311 5.311 10 C -0.004 4.004 11 C -0.088 4.088 12 N -0.270 5.270 13 C -0.044 4.044 14 C -0.037 4.037 15 C -0.571 4.571 16 H 0.050 0.950 17 C -0.192 4.192 18 N -0.592 5.592 19 Si 0.775 3.225 20 H -0.191 1.191 21 H -0.211 1.211 22 H -0.168 1.168 23 C -0.086 4.086 24 C -0.053 4.053 25 H 0.092 0.908 26 H 0.110 0.890 27 H 0.081 0.919 28 H 0.102 0.898 29 H 0.085 0.915 30 H 0.061 0.939 31 H 0.106 0.894 32 H 0.256 0.744 33 H 0.107 0.893 34 H 0.118 0.882 35 H 0.048 0.952 36 H 0.108 0.892 37 H 0.034 0.966 38 H 0.085 0.915 39 H 0.043 0.957 40 H 0.038 0.962 41 H 0.075 0.925 42 H 0.046 0.954 43 H 0.115 0.885 44 H 0.176 0.824 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -18.513 25.234 -4.513 31.621 hybrid contribution -0.178 -1.225 0.753 1.449 sum -18.692 24.009 -3.760 30.659 Atomic orbital electron populations 1.22073 0.91451 1.03312 1.04524 1.21319 0.96062 0.93171 0.86849 1.22175 1.00970 0.95117 1.03713 1.46028 1.15771 1.53159 1.18515 1.19989 0.83239 0.79800 0.87389 1.90338 1.55090 1.59354 1.35409 1.20284 0.81709 0.80624 0.88891 1.90731 1.57083 1.61950 1.32896 1.48224 1.19913 1.47967 1.14975 1.21975 1.00460 0.90641 0.87314 1.22587 0.94388 0.96424 0.95424 1.62046 1.37319 1.20921 1.06714 1.21826 0.96829 0.86698 0.99026 1.19447 0.95553 0.93773 0.94967 1.21408 1.30905 1.01177 1.03621 0.95033 1.25995 0.95313 0.95118 1.02747 1.70068 1.36702 1.14165 1.38236 0.85634 0.77720 0.80322 0.78842 1.19127 1.21081 1.16840 1.22545 0.97914 0.94731 0.93403 1.23367 0.97145 0.96340 0.88420 0.90830 0.88954 0.91919 0.89834 0.91540 0.93885 0.89434 0.74421 0.89262 0.88217 0.95194 0.89214 0.96551 0.91479 0.95732 0.96245 0.92473 0.95359 0.88500 0.82429 0.90208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.91 9.38 71.98 0.68 -0.24 16 2 C 0.13 1.42 3.18 44.99 0.14 1.56 16 3 C -0.16 -1.63 9.48 71.98 0.68 -0.94 16 4 N -0.68 -10.19 5.07 -443.87 -2.25 -12.44 16 5 C 0.51 10.82 7.77 87.27 0.68 11.50 16 6 O -0.52 -12.31 12.70 -3.23 -0.04 -12.35 16 7 C 0.50 12.44 7.77 87.27 0.68 13.12 16 8 O -0.55 -15.21 15.95 -3.24 -0.05 -15.26 16 9 N -0.58 -14.71 3.00 -818.64 -2.46 -17.17 16 10 C 0.12 3.06 6.62 86.50 0.57 3.63 16 11 C 0.04 1.23 5.48 86.54 0.47 1.70 16 12 N -0.55 -17.91 4.63 -894.33 -4.14 -22.05 16 13 C 0.08 3.33 4.90 86.30 0.42 3.76 16 14 C 0.00 0.01 3.97 29.85 0.12 0.13 16 15 C -0.53 -30.93 9.66 25.60 0.25 -30.68 16 16 H 0.03 2.01 7.99 -2.91 -0.02 1.99 16 17 C 0.01 0.30 5.47 84.65 0.46 0.76 16 18 N -0.95 -60.09 13.96 21.45 0.30 -59.79 16 19 Si 0.95 44.55 27.47 68.60 1.88 46.44 16 20 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 21 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 22 H -0.25 -10.70 6.54 99.48 0.65 -10.05 16 23 C 0.04 1.16 5.62 86.38 0.49 1.65 16 24 C 0.07 1.65 6.35 86.35 0.55 2.20 16 25 H 0.07 0.32 8.14 -2.38 -0.02 0.30 16 26 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 27 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.08 1.13 7.58 -2.39 -0.02 1.11 16 29 H 0.07 0.58 8.14 -2.38 -0.02 0.56 16 30 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.42 5.35 8.09 -92.71 -0.75 4.60 16 33 H 0.09 2.20 8.14 -2.38 -0.02 2.18 16 34 H 0.10 2.50 7.07 -2.39 -0.02 2.48 16 35 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.09 2.85 6.16 -2.38 -0.01 2.84 16 37 H 0.02 0.67 8.12 -2.39 -0.02 0.66 16 38 H 0.07 2.69 7.97 -2.39 -0.02 2.67 16 39 H 0.02 1.16 7.20 -2.39 -0.02 1.14 16 40 H 0.02 0.88 5.83 -2.38 -0.01 0.87 16 41 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 42 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.10 2.46 7.99 -2.39 -0.02 2.44 16 44 H 0.16 3.75 3.92 -75.32 -0.29 3.46 16 45 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -69.88 356.84 -0.67 -70.55 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -0.11 Total: 13.91 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: 6.19 Total: 8.15 kcal Atomic # 7 Polarization: -102.90 SS G_CDS: -8.55 Total: -111.45 kcal Atomic # 8 Polarization: -27.52 SS G_CDS: -0.09 Total: -27.61 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 1.88 Total: 46.44 kcal Total: -69.88 -0.67 -70.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053434625.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.174 kcal (2) G-P(sol) polarization free energy of solvation -69.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds