Wall clock time and date at job start Fri Apr 10 2020 17:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86801 * 119.99747 * 2 1 4 4 H 1.48505 * 109.47210 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47114 * 300.00111 * 3 2 1 6 6 H 1.48491 * 109.47180 * 60.00218 * 3 2 1 7 7 C 1.38814 * 120.00390 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00045 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99638 * 359.97438 * 7 2 1 10 10 C 1.46496 * 119.99878 * 179.97438 * 9 7 2 11 11 H 1.09003 * 109.47325 * 325.00778 * 10 9 7 12 12 C 1.53008 * 109.46927 * 85.00361 * 10 9 7 13 13 O 1.42901 * 109.46810 * 64.99954 * 12 10 9 14 14 C 1.53002 * 109.47341 * 205.00184 * 10 9 7 15 15 N 1.46494 * 109.47107 * 55.00386 * 14 10 9 16 16 C 1.34777 * 120.00379 * 180.02562 * 15 14 10 17 17 O 1.21285 * 119.99368 * 359.97438 * 16 15 14 18 18 C 1.50696 * 120.00130 * 180.02562 * 16 15 14 19 19 C 1.54137 * 110.74271 * 206.01062 * 18 16 15 20 20 C 1.55158 * 102.88709 * 98.15320 * 19 18 16 21 21 C 1.54840 * 101.65830 * 36.16077 * 20 19 18 22 22 N 1.47853 * 111.37967 * 325.28505 * 18 16 15 23 23 C 1.47954 * 108.36966 * 120.69545 * 22 18 16 24 24 C 1.54832 * 105.06790 * 337.18263 * 23 22 18 25 25 C 1.54140 * 110.74808 * 84.56868 * 18 16 15 26 26 H 0.97000 * 120.00549 * 359.97438 * 1 2 3 27 27 H 0.97000 * 119.99768 * 0.02562 * 9 7 2 28 28 H 1.08995 * 109.47072 * 185.00025 * 12 10 9 29 29 H 1.09000 * 109.47049 * 305.00177 * 12 10 9 30 30 H 0.96700 * 113.99470 * 180.02562 * 13 12 10 31 31 H 1.09005 * 109.46693 * 295.00213 * 14 10 9 32 32 H 1.08995 * 109.47017 * 175.00267 * 14 10 9 33 33 H 0.97006 * 120.00219 * 359.97438 * 15 14 10 34 34 H 1.09002 * 110.73388 * 216.50312 * 19 18 16 35 35 H 1.09000 * 110.73226 * 339.80251 * 19 18 16 36 36 H 1.09004 * 110.99267 * 154.24783 * 20 19 18 37 37 H 1.08994 * 110.99075 * 278.06506 * 20 19 18 38 38 H 1.08999 * 110.32608 * 204.43192 * 21 20 19 39 39 H 1.08998 * 110.32382 * 82.22536 * 21 20 19 40 40 H 1.09002 * 110.32616 * 218.28665 * 23 22 18 41 41 H 1.09001 * 110.41379 * 96.12761 * 23 22 18 42 42 H 1.09006 * 110.99401 * 278.58320 * 24 23 22 43 43 H 1.09004 * 110.99402 * 154.76459 * 24 23 22 44 44 H 1.09006 * 110.72668 * 20.18299 * 25 18 16 45 45 H 1.08999 * 110.72835 * 143.48064 * 25 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8914 2.3964 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0017 11 1 2.9685 -3.5502 -0.5917 12 6 2.4230 -4.0362 1.4350 13 8 1.2293 -4.2895 2.1785 14 6 1.1805 -4.7519 -0.6111 15 7 0.7330 -4.3347 -1.9422 16 6 -0.0573 -5.1461 -2.6726 17 8 -0.3976 -6.2220 -2.2279 18 6 -0.5172 -4.7172 -4.0420 19 6 -1.8446 -5.4070 -4.4131 20 6 -2.9036 -4.3249 -4.0741 21 6 -2.1623 -3.0256 -4.4740 22 7 -0.7498 -3.2582 -4.1001 23 6 0.1344 -2.6860 -5.1392 24 6 1.2910 -3.7045 -5.2890 25 6 0.5467 -5.0535 -5.1055 26 1 -0.4851 0.8400 0.0004 27 1 0.3556 -2.3880 -0.0005 28 1 3.0436 -4.9322 1.4276 29 1 2.9729 -3.2172 1.8986 30 1 1.3851 -4.5358 3.1005 31 1 0.3134 -4.9200 0.0276 32 1 1.7554 -5.6742 -0.6937 33 1 1.0049 -3.4740 -2.2977 34 1 -1.8689 -5.6513 -5.4751 35 1 -1.9980 -6.3000 -3.8072 36 1 -3.8050 -4.4597 -4.6720 37 1 -3.1387 -4.3285 -3.0099 38 1 -2.5645 -2.1753 -3.9233 39 1 -2.2468 -2.8566 -5.5475 40 1 0.5209 -1.7191 -4.8171 41 1 -0.4036 -2.5830 -6.0816 42 1 2.0397 -3.5625 -4.5095 43 1 1.7429 -3.6394 -6.2788 44 1 1.2270 -5.8231 -4.7407 45 1 0.0754 -5.3640 -6.0380 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676549568.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:42:05 Heat of formation + Delta-G solvation = -92.479223 kcal Electronic energy + Delta-G solvation = -25963.343384 eV Core-core repulsion = 22400.702445 eV Total energy + Delta-G solvation = -3562.640940 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -41.89588 -39.59902 -38.47930 -36.38369 -35.26226 -34.73698 -33.05279 -32.30925 -30.19965 -29.17428 -26.66546 -26.38105 -25.58942 -23.05868 -22.49968 -21.64721 -21.57169 -20.14579 -19.32119 -18.30228 -18.15175 -17.32451 -16.86748 -16.55706 -16.13729 -15.94908 -15.41231 -15.32549 -15.08873 -14.86683 -14.69878 -14.45904 -14.26247 -13.93375 -13.68037 -13.28852 -13.10024 -13.00722 -12.73765 -12.64897 -12.49978 -12.43042 -12.20127 -12.05505 -11.92230 -11.85256 -11.75663 -11.70243 -11.34942 -11.02152 -10.80444 -10.71624 -9.90235 -9.37534 -8.95633 -7.84750 -5.14091 1.49998 1.50643 1.59918 1.65181 2.39820 2.60137 2.93418 3.45998 3.48058 3.54200 3.62274 3.77972 3.92220 4.01229 4.02624 4.09094 4.10238 4.21068 4.41905 4.45928 4.55974 4.57799 4.59952 4.62886 4.71372 4.84761 4.87760 4.91536 4.96036 5.01235 5.03911 5.07247 5.16443 5.22891 5.23681 5.26065 5.56132 5.62391 5.85612 6.05349 6.32289 6.73226 7.07095 7.35008 7.40566 8.13106 8.39331 9.37817 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.012894 B = 0.005797 C = 0.004686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2170.954453 B = 4829.339326 C = 5974.116870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.962 5.962 2 C -0.069 4.069 3 Si 0.966 3.034 4 H -0.264 1.264 5 H -0.296 1.296 6 H -0.302 1.302 7 C -0.235 4.235 8 H 0.080 0.920 9 N -0.719 5.719 10 C 0.162 3.838 11 H 0.076 0.924 12 C 0.065 3.935 13 O -0.584 6.584 14 C 0.127 3.873 15 N -0.696 5.696 16 C 0.529 3.471 17 O -0.594 6.594 18 C 0.068 3.932 19 C -0.120 4.120 20 C -0.129 4.129 21 C 0.037 3.963 22 N -0.526 5.526 23 C 0.033 3.967 24 C -0.127 4.127 25 C -0.117 4.117 26 H 0.246 0.754 27 H 0.371 0.629 28 H 0.065 0.935 29 H 0.037 0.963 30 H 0.385 0.615 31 H 0.044 0.956 32 H 0.075 0.925 33 H 0.412 0.588 34 H 0.106 0.894 35 H 0.071 0.929 36 H 0.104 0.896 37 H 0.045 0.955 38 H 0.066 0.934 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.061 0.939 43 H 0.106 0.894 44 H 0.071 0.929 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.917 -9.968 -12.306 15.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.612 5.612 2 C -0.262 4.262 3 Si 0.797 3.203 4 H -0.189 1.189 5 H -0.224 1.224 6 H -0.230 1.230 7 C -0.367 4.367 8 H 0.098 0.902 9 N -0.359 5.359 10 C 0.053 3.947 11 H 0.094 0.906 12 C -0.015 4.015 13 O -0.391 6.391 14 C 0.002 3.998 15 N -0.345 5.345 16 C 0.316 3.684 17 O -0.476 6.476 18 C -0.024 4.024 19 C -0.159 4.159 20 C -0.167 4.167 21 C -0.090 4.090 22 N -0.251 5.251 23 C -0.094 4.094 24 C -0.165 4.165 25 C -0.156 4.156 26 H 0.055 0.945 27 H 0.203 0.797 28 H 0.083 0.917 29 H 0.056 0.944 30 H 0.233 0.767 31 H 0.063 0.937 32 H 0.093 0.907 33 H 0.249 0.751 34 H 0.124 0.876 35 H 0.090 0.910 36 H 0.122 0.878 37 H 0.064 0.936 38 H 0.084 0.916 39 H 0.097 0.903 40 H 0.088 0.912 41 H 0.093 0.907 42 H 0.080 0.920 43 H 0.125 0.875 44 H 0.089 0.911 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 1.710 -10.172 -12.028 15.845 hybrid contribution 0.069 1.115 0.444 1.202 sum 1.779 -9.057 -11.585 14.812 Atomic orbital electron populations 1.69871 1.06600 1.25420 1.59299 1.25453 0.96091 1.00654 1.03956 0.85178 0.78406 0.80522 0.76210 1.18851 1.22378 1.22959 1.19605 0.91326 0.84840 1.40902 0.90250 1.42429 1.05271 1.00113 1.88063 1.20815 0.94927 0.85482 0.93493 0.90608 1.22877 0.86498 0.98537 0.93637 1.86538 1.32932 1.92059 1.27532 1.21373 0.98173 0.97067 0.83159 1.45916 1.49970 1.21669 1.16992 1.20693 0.77121 0.83416 0.87198 1.90602 1.59091 1.24731 1.73126 1.22361 0.98334 0.89782 0.91970 1.22826 0.91549 0.98528 1.02973 1.22757 0.98964 0.93884 1.01103 1.23284 0.87233 0.98235 1.00238 1.65121 1.05790 1.08688 1.45520 1.23346 0.94005 0.98666 0.93400 1.22806 0.97202 0.92922 1.03582 1.22852 0.96409 0.98502 0.97790 0.94487 0.79694 0.91683 0.94430 0.76734 0.93736 0.90704 0.75132 0.87608 0.91018 0.87803 0.93619 0.91592 0.90300 0.91181 0.90668 0.91982 0.87523 0.91060 0.87547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.89 13.06 21.65 0.28 -58.60 16 2 C -0.07 -3.87 5.50 84.86 0.47 -3.40 16 3 Si 0.97 45.43 29.55 68.60 2.03 47.46 16 4 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 5 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 6 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 7 C -0.24 -12.51 9.93 84.03 0.83 -11.67 16 8 H 0.08 3.99 7.83 -2.91 -0.02 3.96 16 9 N -0.72 -35.59 4.51 -322.93 -1.46 -37.04 16 10 C 0.16 6.32 2.84 45.00 0.13 6.45 16 11 H 0.08 2.76 8.08 -2.39 -0.02 2.74 16 12 C 0.07 2.24 6.86 71.98 0.49 2.73 16 13 O -0.58 -21.27 12.64 -148.98 -1.88 -23.15 16 14 C 0.13 4.85 5.12 86.38 0.44 5.29 16 15 N -0.70 -26.33 5.31 -463.07 -2.46 -28.79 16 16 C 0.53 19.51 6.68 87.66 0.59 20.10 16 17 O -0.59 -25.13 15.66 -3.05 -0.05 -25.18 16 18 C 0.07 1.94 0.91 3.37 0.00 1.94 16 19 C -0.12 -2.99 5.99 31.72 0.19 -2.80 16 20 C -0.13 -3.21 7.07 31.96 0.23 -2.98 16 21 C 0.04 0.97 6.72 86.73 0.58 1.55 16 22 N -0.53 -15.49 4.79 -831.20 -3.98 -19.47 16 23 C 0.03 0.79 6.72 86.73 0.58 1.37 16 24 C -0.13 -2.60 7.07 31.96 0.23 -2.37 16 25 C -0.12 -2.49 6.03 31.72 0.19 -2.30 16 26 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 27 H 0.37 21.10 7.80 -92.71 -0.72 20.38 16 28 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.38 9.87 9.12 -74.06 -0.68 9.20 16 31 H 0.04 1.96 7.39 -2.38 -0.02 1.95 16 32 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 33 H 0.41 16.25 7.59 -92.70 -0.70 15.54 16 34 H 0.11 1.91 7.30 -2.39 -0.02 1.89 16 35 H 0.07 2.10 6.85 -2.39 -0.02 2.09 16 36 H 0.10 1.92 8.14 -2.38 -0.02 1.90 16 37 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.08 1.55 7.08 -2.39 -0.02 1.53 16 40 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.08 1.40 7.08 -2.39 -0.02 1.38 16 42 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 43 H 0.11 1.55 8.14 -2.38 -0.02 1.53 16 44 H 0.07 1.61 7.85 -2.38 -0.02 1.59 16 45 H 0.11 1.68 7.30 -2.39 -0.02 1.66 16 Total: -1.00 -71.47 357.12 -3.65 -75.13 By element: Atomic # 1 Polarization: 56.85 SS G_CDS: -1.09 Total: 55.76 kcal Atomic # 6 Polarization: 8.95 SS G_CDS: 4.95 Total: 13.90 kcal Atomic # 7 Polarization: -136.30 SS G_CDS: -7.61 Total: -143.91 kcal Atomic # 8 Polarization: -46.40 SS G_CDS: -1.93 Total: -48.33 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -71.47 -3.65 -75.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676549568.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.352 kcal (2) G-P(sol) polarization free energy of solvation -71.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds