Wall clock time and date at job start Fri Apr 10 2020 17:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36936 * 119.99925 * 2 1 4 4 H 1.08003 * 119.99720 * 202.34745 * 3 2 1 5 5 C 1.38810 * 120.00290 * 22.34664 * 3 2 1 6 6 N 1.31623 * 119.99626 * 11.35407 * 5 3 2 7 7 Si 1.86800 * 120.00153 * 191.35171 * 5 3 2 8 8 H 1.48505 * 109.47025 * 0.02562 * 7 5 3 9 9 H 1.48504 * 109.46781 * 119.99985 * 7 5 3 10 10 H 1.48495 * 109.47533 * 240.00026 * 7 5 3 11 11 C 1.46506 * 119.99943 * 180.02562 * 2 1 3 12 12 C 1.53001 * 109.46894 * 269.99803 * 11 2 1 13 13 C 1.53003 * 109.46630 * 180.02562 * 12 11 2 14 14 N 1.46510 * 109.46614 * 179.97438 * 13 12 11 15 15 C 1.34775 * 119.99337 * 179.97438 * 14 13 12 16 16 O 1.21271 * 120.00442 * 0.02562 * 15 14 13 17 17 C 1.50703 * 119.99495 * 180.02562 * 15 14 13 18 18 N 1.46498 * 109.47471 * 180.02562 * 17 15 14 19 19 C 1.33881 * 122.76007 * 269.71181 * 18 17 15 20 20 O 1.21224 * 125.39576 * 359.97438 * 19 18 17 21 21 C 1.51318 * 109.20643 * 179.83399 * 19 18 17 22 22 C 1.54235 * 103.55408 * 0.38894 * 21 19 18 23 23 C 1.33881 * 122.76470 * 89.99180 * 18 17 15 24 24 O 1.21223 * 125.39549 * 359.97438 * 23 18 17 25 25 H 1.08999 * 109.46521 * 274.20741 * 1 2 3 26 26 H 1.08993 * 109.47246 * 34.20133 * 1 2 3 27 27 H 1.08998 * 109.47118 * 154.20975 * 1 2 3 28 28 H 0.96997 * 119.99356 * 180.02562 * 6 5 3 29 29 H 1.08998 * 109.46907 * 149.99681 * 11 2 1 30 30 H 1.09003 * 109.46904 * 29.99670 * 11 2 1 31 31 H 1.08998 * 109.46991 * 59.99923 * 12 11 2 32 32 H 1.09003 * 109.46781 * 299.99939 * 12 11 2 33 33 H 1.08998 * 109.47500 * 60.00231 * 13 12 11 34 34 H 1.08993 * 109.47068 * 299.99837 * 13 12 11 35 35 H 0.96999 * 120.00243 * 359.97438 * 14 13 12 36 36 H 1.09003 * 109.47201 * 299.99763 * 17 15 14 37 37 H 1.08994 * 109.47579 * 59.99789 * 17 15 14 38 38 H 1.08996 * 110.80015 * 241.77999 * 21 19 18 39 39 H 1.09004 * 110.54368 * 118.87559 * 21 19 18 40 40 H 1.08993 * 110.60308 * 241.25958 * 22 21 19 41 41 H 1.08997 * 110.60366 * 118.28994 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1689 1.2210 -0.3556 5 6 1.5339 2.3429 0.4570 6 7 0.3842 2.2690 1.0938 7 14 2.3366 4.0048 0.1685 8 1 3.6138 3.8168 -0.5656 9 1 1.4266 4.8615 -0.6335 10 1 2.6075 4.6572 1.4747 11 6 2.1975 -1.2688 -0.0006 12 6 2.4525 -1.7110 1.4418 13 6 3.2181 -3.0358 1.4411 14 7 3.4628 -3.4589 2.8222 15 6 4.1255 -4.6065 3.0679 16 8 4.5195 -5.2886 2.1458 17 6 4.3767 -5.0421 4.4886 18 7 5.1098 -6.3105 4.4881 19 6 4.4976 -7.5011 4.4932 20 8 3.2977 -7.6737 4.4990 21 6 5.5408 -8.5973 4.4869 22 6 6.8761 -7.8255 4.4874 23 6 6.4471 -6.3744 4.4881 24 8 7.1956 -5.4209 4.4880 25 1 -0.3632 0.0754 1.0249 26 1 -0.3633 0.8499 -0.5776 27 1 -0.3633 -0.9253 -0.4471 28 1 -0.0462 3.0775 1.4128 29 1 3.1499 -1.1382 -0.5144 30 1 1.6084 -2.0282 -0.5147 31 1 1.5001 -1.8415 1.9555 32 1 3.0417 -0.9515 1.9558 33 1 4.1705 -2.9048 0.9275 34 1 2.6294 -3.7953 0.9269 35 1 3.1480 -2.9132 3.5597 36 1 4.9658 -4.2827 5.0027 37 1 3.4244 -5.1727 5.0024 38 1 5.4525 -9.2105 3.5901 39 1 5.4535 -9.2135 5.3818 40 1 7.4520 -8.0547 3.5909 41 1 7.4519 -8.0557 5.3838 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689886167.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:42:39 Heat of formation + Delta-G solvation = -76.968491 kcal Electronic energy + Delta-G solvation = -23540.341200 eV Core-core repulsion = 19842.539761 eV Total energy + Delta-G solvation = -3697.801438 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.152 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.26578 -39.49157 -38.87788 -36.33396 -36.09169 -34.79545 -33.83863 -32.04016 -30.21186 -28.27854 -26.56507 -25.92809 -25.10035 -22.75215 -22.11417 -21.12296 -20.33894 -19.62368 -17.92638 -17.70623 -16.83722 -16.75224 -16.56596 -15.77041 -15.57365 -14.98588 -14.67228 -14.53437 -14.39025 -14.26262 -14.23218 -13.63076 -13.32611 -13.19116 -13.09151 -12.71198 -12.45303 -11.81077 -11.63472 -11.33665 -11.08936 -11.03948 -10.85902 -10.77366 -10.68218 -10.47848 -10.39642 -10.08201 -9.93452 -9.78683 -9.68244 -9.02758 -8.56135 -6.77675 -5.73411 -3.19195 1.19131 1.97077 2.36803 2.48058 3.21853 3.37105 3.44407 3.46510 3.67069 3.80898 4.00532 4.39729 4.49391 4.57389 4.68268 4.84292 4.99962 5.00834 5.15283 5.18668 5.25356 5.44549 5.50016 5.82058 5.92317 6.11148 6.18486 6.41781 6.42589 6.53559 6.76028 6.81354 6.95902 6.99167 7.34880 7.39125 7.47948 7.72689 7.80992 8.09679 8.39582 9.23566 9.86752 10.35532 11.31762 Molecular weight = 297.15amu Principal moments of inertia in cm(-1) A = 0.029045 B = 0.002539 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.784094 B =11023.163298 C =11490.857674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.603 5.603 3 C -0.252 4.252 4 H 0.069 0.931 5 C -0.001 4.001 6 N -0.909 5.909 7 Si 0.905 3.095 8 H -0.278 1.278 9 H -0.289 1.289 10 H -0.290 1.290 11 C 0.156 3.844 12 C -0.150 4.150 13 C 0.121 3.879 14 N -0.719 5.719 15 C 0.499 3.501 16 O -0.538 6.538 17 C 0.077 3.923 18 N -0.559 5.559 19 C 0.531 3.469 20 O -0.479 6.479 21 C -0.154 4.154 22 C -0.154 4.154 23 C 0.531 3.469 24 O -0.479 6.479 25 H 0.027 0.973 26 H 0.045 0.955 27 H -0.003 1.003 28 H 0.251 0.749 29 H 0.045 0.955 30 H 0.039 0.961 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.403 0.597 36 H 0.124 0.876 37 H 0.124 0.876 38 H 0.123 0.877 39 H 0.121 0.879 40 H 0.123 0.877 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.077 -21.563 10.232 25.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.326 5.326 3 C -0.382 4.382 4 H 0.087 0.913 5 C -0.198 4.198 6 N -0.555 5.555 7 Si 0.735 3.265 8 H -0.203 1.203 9 H -0.216 1.216 10 H -0.218 1.218 11 C 0.028 3.972 12 C -0.191 4.191 13 C -0.003 4.003 14 N -0.370 5.370 15 C 0.283 3.717 16 O -0.415 6.415 17 C -0.049 4.049 18 N -0.301 5.301 19 C 0.320 3.680 20 O -0.350 6.350 21 C -0.194 4.194 22 C -0.193 4.193 23 C 0.320 3.680 24 O -0.349 6.349 25 H 0.046 0.954 26 H 0.063 0.937 27 H 0.015 0.985 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.238 0.762 36 H 0.142 0.858 37 H 0.142 0.858 38 H 0.141 0.859 39 H 0.139 0.861 40 H 0.141 0.859 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 9.977 -21.447 9.587 25.523 hybrid contribution 0.091 1.420 0.373 1.471 sum 10.068 -20.028 9.960 24.529 Atomic orbital electron populations 1.20805 0.82478 0.95620 0.99244 1.44000 1.01991 1.00706 1.85855 1.19279 0.97966 0.85419 1.35553 0.91310 1.25040 0.97727 0.98560 0.98517 1.70081 1.17884 1.26920 1.40589 0.86177 0.78675 0.84251 0.77413 1.20317 1.21626 1.21751 1.20714 0.95996 0.88256 0.92209 1.22568 0.99612 0.93849 1.03079 1.21556 1.00406 0.97250 0.81090 1.46076 1.57297 1.23223 1.10413 1.20637 0.78410 0.81624 0.91003 1.90701 1.51006 1.53990 1.45823 1.21609 1.00254 0.86407 0.96585 1.46313 1.09422 1.08375 1.66038 1.20834 0.89420 0.84339 0.73397 1.90794 1.14478 1.84532 1.45237 1.22450 0.91974 0.97580 1.07348 1.22453 0.98769 0.90788 1.07336 1.20841 0.81065 0.92703 0.73428 1.90799 1.56271 1.42720 1.45146 0.95425 0.93657 0.98484 0.93839 0.93615 0.94263 0.92062 0.91204 0.91661 0.91821 0.76242 0.85767 0.85772 0.85907 0.86071 0.85920 0.86040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.04 9.01 59.85 0.54 4.58 16 2 N -0.60 -15.18 2.93 -181.12 -0.53 -15.71 16 3 C -0.25 -6.93 9.67 -15.06 -0.15 -7.08 16 4 H 0.07 1.86 7.84 -52.48 -0.41 1.44 16 5 C 0.00 -0.01 5.13 -17.43 -0.09 -0.10 16 6 N -0.91 -26.41 10.59 55.49 0.59 -25.82 16 7 Si 0.90 21.87 29.57 -169.99 -5.03 16.85 16 8 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 9 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 10 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 11 C 0.16 3.17 5.71 -4.04 -0.02 3.14 16 12 C -0.15 -2.64 5.65 -26.73 -0.15 -2.79 16 13 C 0.12 1.84 5.67 -4.04 -0.02 1.81 16 14 N -0.72 -9.47 5.56 -60.29 -0.33 -9.81 16 15 C 0.50 6.96 7.90 -10.98 -0.09 6.88 16 16 O -0.54 -9.49 16.43 5.57 0.09 -9.40 16 17 C 0.08 0.78 6.04 -5.19 -0.03 0.75 16 18 N -0.56 -5.66 2.04 -116.62 -0.24 -5.90 16 19 C 0.53 5.09 8.08 -11.08 -0.09 5.01 16 20 O -0.48 -6.27 17.47 5.61 0.10 -6.17 16 21 C -0.15 -0.68 7.03 -26.93 -0.19 -0.87 16 22 C -0.15 -0.69 7.03 -26.94 -0.19 -0.88 16 23 C 0.53 5.14 8.08 -11.08 -0.09 5.05 16 24 O -0.48 -6.35 17.48 5.61 0.10 -6.26 16 25 H 0.03 0.73 7.42 -51.93 -0.39 0.34 16 26 H 0.04 1.21 7.19 -51.93 -0.37 0.83 16 27 H 0.00 -0.07 7.84 -51.93 -0.41 -0.48 16 28 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 29 H 0.05 0.91 8.03 -51.93 -0.42 0.49 16 30 H 0.04 0.73 7.86 -51.93 -0.41 0.32 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.40 4.31 8.47 -40.82 -0.35 3.97 16 36 H 0.12 1.04 7.83 -51.93 -0.41 0.63 16 37 H 0.12 1.03 7.82 -51.93 -0.41 0.62 16 38 H 0.12 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.12 0.22 8.14 -51.93 -0.42 -0.20 16 40 H 0.12 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.12 0.23 8.14 -51.93 -0.42 -0.19 16 LS Contribution 352.13 15.07 5.31 5.31 Total: -1.00 -36.97 352.13 -6.60 -43.56 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: -6.08 Total: -2.15 kcal Atomic # 6 Polarization: 16.07 SS G_CDS: -0.57 Total: 15.50 kcal Atomic # 7 Polarization: -56.72 SS G_CDS: -0.52 Total: -57.24 kcal Atomic # 8 Polarization: -22.11 SS G_CDS: 0.29 Total: -21.82 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.03 Total: 16.85 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -36.97 -6.60 -43.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689886167.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.406 kcal (2) G-P(sol) polarization free energy of solvation -36.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds