Wall clock time and date at job start Fri Apr 10 2020 17:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36936 * 119.99925 * 2 1 4 4 H 1.08003 * 119.99720 * 202.34745 * 3 2 1 5 5 C 1.38810 * 120.00290 * 22.34664 * 3 2 1 6 6 N 1.31623 * 119.99626 * 11.35407 * 5 3 2 7 7 Si 1.86800 * 120.00153 * 191.35171 * 5 3 2 8 8 H 1.48505 * 109.47025 * 0.02562 * 7 5 3 9 9 H 1.48504 * 109.46781 * 119.99985 * 7 5 3 10 10 H 1.48495 * 109.47533 * 240.00026 * 7 5 3 11 11 C 1.46506 * 119.99943 * 180.02562 * 2 1 3 12 12 C 1.53001 * 109.46894 * 269.99803 * 11 2 1 13 13 C 1.53003 * 109.46630 * 180.02562 * 12 11 2 14 14 N 1.46510 * 109.46614 * 179.97438 * 13 12 11 15 15 C 1.34775 * 119.99337 * 179.97438 * 14 13 12 16 16 O 1.21271 * 120.00442 * 0.02562 * 15 14 13 17 17 C 1.50703 * 119.99495 * 180.02562 * 15 14 13 18 18 N 1.46498 * 109.47471 * 180.02562 * 17 15 14 19 19 C 1.33881 * 122.76007 * 269.71181 * 18 17 15 20 20 O 1.21224 * 125.39576 * 359.97438 * 19 18 17 21 21 C 1.51318 * 109.20643 * 179.83399 * 19 18 17 22 22 C 1.54235 * 103.55408 * 0.38894 * 21 19 18 23 23 C 1.33881 * 122.76470 * 89.99180 * 18 17 15 24 24 O 1.21223 * 125.39549 * 359.97438 * 23 18 17 25 25 H 1.08999 * 109.46521 * 274.20741 * 1 2 3 26 26 H 1.08993 * 109.47246 * 34.20133 * 1 2 3 27 27 H 1.08998 * 109.47118 * 154.20975 * 1 2 3 28 28 H 0.96997 * 119.99356 * 180.02562 * 6 5 3 29 29 H 1.08998 * 109.46907 * 149.99681 * 11 2 1 30 30 H 1.09003 * 109.46904 * 29.99670 * 11 2 1 31 31 H 1.08998 * 109.46991 * 59.99923 * 12 11 2 32 32 H 1.09003 * 109.46781 * 299.99939 * 12 11 2 33 33 H 1.08998 * 109.47500 * 60.00231 * 13 12 11 34 34 H 1.08993 * 109.47068 * 299.99837 * 13 12 11 35 35 H 0.96999 * 120.00243 * 359.97438 * 14 13 12 36 36 H 1.09003 * 109.47201 * 299.99763 * 17 15 14 37 37 H 1.08994 * 109.47579 * 59.99789 * 17 15 14 38 38 H 1.08996 * 110.80015 * 241.77999 * 21 19 18 39 39 H 1.09004 * 110.54368 * 118.87559 * 21 19 18 40 40 H 1.08993 * 110.60308 * 241.25958 * 22 21 19 41 41 H 1.08997 * 110.60366 * 118.28994 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1689 1.2210 -0.3556 5 6 1.5339 2.3429 0.4570 6 7 0.3842 2.2690 1.0938 7 14 2.3366 4.0048 0.1685 8 1 3.6138 3.8168 -0.5656 9 1 1.4266 4.8615 -0.6335 10 1 2.6075 4.6572 1.4747 11 6 2.1975 -1.2688 -0.0006 12 6 2.4525 -1.7110 1.4418 13 6 3.2181 -3.0358 1.4411 14 7 3.4628 -3.4589 2.8222 15 6 4.1255 -4.6065 3.0679 16 8 4.5195 -5.2886 2.1458 17 6 4.3767 -5.0421 4.4886 18 7 5.1098 -6.3105 4.4881 19 6 4.4976 -7.5011 4.4932 20 8 3.2977 -7.6737 4.4990 21 6 5.5408 -8.5973 4.4869 22 6 6.8761 -7.8255 4.4874 23 6 6.4471 -6.3744 4.4881 24 8 7.1956 -5.4209 4.4880 25 1 -0.3632 0.0754 1.0249 26 1 -0.3633 0.8499 -0.5776 27 1 -0.3633 -0.9253 -0.4471 28 1 -0.0462 3.0775 1.4128 29 1 3.1499 -1.1382 -0.5144 30 1 1.6084 -2.0282 -0.5147 31 1 1.5001 -1.8415 1.9555 32 1 3.0417 -0.9515 1.9558 33 1 4.1705 -2.9048 0.9275 34 1 2.6294 -3.7953 0.9269 35 1 3.1480 -2.9132 3.5597 36 1 4.9658 -4.2827 5.0027 37 1 3.4244 -5.1727 5.0024 38 1 5.4525 -9.2105 3.5901 39 1 5.4535 -9.2135 5.3818 40 1 7.4520 -8.0547 3.5909 41 1 7.4519 -8.0557 5.3838 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689886167.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:42:37 Heat of formation + Delta-G solvation = -104.051141 kcal Electronic energy + Delta-G solvation = -23541.515591 eV Core-core repulsion = 19842.539761 eV Total energy + Delta-G solvation = -3698.975830 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.152 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -42.98340 -40.62478 -39.68655 -38.00207 -36.95791 -36.26132 -34.48082 -33.76946 -31.86560 -29.26587 -27.94941 -27.12318 -26.67079 -23.73487 -23.34545 -22.32106 -21.86079 -20.49498 -18.83477 -18.79593 -18.49576 -17.57282 -17.40067 -17.06740 -16.79684 -16.51917 -15.78973 -15.72737 -15.41079 -15.30339 -15.00068 -14.91606 -14.76804 -14.54552 -14.30826 -13.57766 -13.53859 -13.24131 -13.03092 -12.82324 -12.74474 -12.49479 -12.30993 -12.10626 -12.02145 -11.89165 -11.81546 -11.67051 -11.49873 -11.14018 -10.76305 -10.65303 -10.23289 -8.81890 -7.84121 -5.32170 0.48558 1.24702 1.38155 1.45087 1.46860 1.56912 1.68558 2.20599 2.50328 3.20258 3.25555 3.30241 3.56214 3.63021 3.63340 3.94985 4.07875 4.08031 4.19270 4.21230 4.28914 4.44296 4.61056 4.76194 4.76469 4.84021 4.87483 4.90854 4.92495 5.25845 5.26389 5.33451 5.43668 5.63261 5.72075 5.73179 6.27271 6.31965 6.34143 6.68445 7.01140 7.14557 7.86210 8.29528 9.19648 Molecular weight = 297.15amu Principal moments of inertia in cm(-1) A = 0.029045 B = 0.002539 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.784094 B =11023.163298 C =11490.857674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.621 5.621 3 C -0.261 4.261 4 H 0.070 0.930 5 C -0.054 4.054 6 N -0.938 5.938 7 Si 0.968 3.032 8 H -0.268 1.268 9 H -0.292 1.292 10 H -0.291 1.291 11 C 0.151 3.849 12 C -0.129 4.129 13 C 0.134 3.866 14 N -0.713 5.713 15 C 0.495 3.505 16 O -0.578 6.578 17 C 0.076 3.924 18 N -0.567 5.567 19 C 0.522 3.478 20 O -0.523 6.523 21 C -0.140 4.140 22 C -0.140 4.140 23 C 0.521 3.479 24 O -0.524 6.524 25 H 0.005 0.995 26 H 0.017 0.983 27 H 0.029 0.971 28 H 0.248 0.752 29 H 0.048 0.952 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.416 0.584 36 H 0.141 0.859 37 H 0.142 0.858 38 H 0.139 0.861 39 H 0.156 0.844 40 H 0.138 0.862 41 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.523 -23.416 10.880 28.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.344 5.344 3 C -0.391 4.391 4 H 0.088 0.912 5 C -0.249 4.249 6 N -0.585 5.585 7 Si 0.796 3.204 8 H -0.192 1.192 9 H -0.218 1.218 10 H -0.218 1.218 11 C 0.024 3.976 12 C -0.170 4.170 13 C 0.010 3.990 14 N -0.365 5.365 15 C 0.281 3.719 16 O -0.458 6.458 17 C -0.050 4.050 18 N -0.309 5.309 19 C 0.314 3.686 20 O -0.397 6.397 21 C -0.179 4.179 22 C -0.178 4.178 23 C 0.313 3.687 24 O -0.398 6.398 25 H 0.023 0.977 26 H 0.036 0.964 27 H 0.048 0.952 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.253 0.747 36 H 0.158 0.842 37 H 0.160 0.840 38 H 0.157 0.843 39 H 0.174 0.826 40 H 0.156 0.844 41 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 11.446 -23.333 10.252 27.938 hybrid contribution -0.360 1.941 0.141 1.979 sum 11.085 -21.392 10.393 26.240 Atomic orbital electron populations 1.20568 0.82666 0.96000 0.97667 1.44231 1.02264 1.01774 1.86133 1.19568 0.98070 0.86622 1.34821 0.91222 1.25780 0.98476 1.01790 0.98853 1.70236 1.19173 1.27354 1.41780 0.85191 0.78037 0.80095 0.77052 1.19229 1.21839 1.21823 1.20884 0.95974 0.86860 0.93869 1.22203 0.99382 0.94469 1.00912 1.21235 0.99630 0.95844 0.82327 1.45963 1.57105 1.23424 1.10027 1.21287 0.77356 0.80994 0.92241 1.90671 1.52629 1.55143 1.47390 1.21676 1.01734 0.87541 0.94019 1.46625 1.09995 1.08543 1.65783 1.21805 0.89754 0.85226 0.71827 1.90769 1.16522 1.85100 1.47288 1.22595 0.89488 0.96071 1.09699 1.22600 0.99160 0.86438 1.09651 1.21825 0.80482 0.94549 0.71826 1.90772 1.57046 1.44663 1.47290 0.97653 0.96403 0.95215 0.94303 0.93339 0.92280 0.92452 0.92909 0.92290 0.91752 0.74742 0.84158 0.83993 0.84347 0.82633 0.84408 0.82628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.75 9.01 127.77 1.15 9.90 16 2 N -0.62 -31.16 2.93 -726.93 -2.13 -33.29 16 3 C -0.26 -14.32 9.67 84.03 0.81 -13.50 16 4 H 0.07 3.74 7.84 -2.91 -0.02 3.71 16 5 C -0.05 -3.04 5.13 84.86 0.44 -2.60 16 6 N -0.94 -55.37 10.59 21.65 0.23 -55.14 16 7 Si 0.97 45.22 29.57 68.60 2.03 47.25 16 8 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 9 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 10 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 11 C 0.15 5.97 5.71 86.38 0.49 6.46 16 12 C -0.13 -4.48 5.65 30.60 0.17 -4.30 16 13 C 0.13 4.00 5.67 86.38 0.49 4.49 16 14 N -0.71 -18.39 5.56 -463.05 -2.57 -20.97 16 15 C 0.50 13.65 7.90 87.66 0.69 14.34 16 16 O -0.58 -20.40 16.43 -3.00 -0.05 -20.45 16 17 C 0.08 1.48 6.04 85.63 0.52 2.00 16 18 N -0.57 -10.88 2.04 -760.72 -1.55 -12.43 16 19 C 0.52 9.21 8.08 87.99 0.71 9.93 16 20 O -0.52 -13.33 17.47 -2.86 -0.05 -13.38 16 21 C -0.14 -0.75 7.03 30.46 0.21 -0.53 16 22 C -0.14 -0.77 7.03 30.46 0.21 -0.55 16 23 C 0.52 9.35 8.08 87.99 0.71 10.06 16 24 O -0.52 -13.66 17.48 -2.85 -0.05 -13.71 16 25 H 0.01 0.28 7.42 -2.39 -0.02 0.26 16 26 H 0.02 0.94 7.19 -2.39 -0.02 0.93 16 27 H 0.03 1.25 7.84 -2.39 -0.02 1.23 16 28 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 29 H 0.05 1.89 8.03 -2.39 -0.02 1.87 16 30 H 0.06 2.10 7.86 -2.39 -0.02 2.08 16 31 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.06 1.94 8.14 -2.39 -0.02 1.93 16 35 H 0.42 8.58 8.47 -92.71 -0.79 7.80 16 36 H 0.14 2.25 7.83 -2.39 -0.02 2.24 16 37 H 0.14 2.23 7.82 -2.39 -0.02 2.21 16 38 H 0.14 0.42 8.14 -2.39 -0.02 0.40 16 39 H 0.16 -0.16 8.14 -2.39 -0.02 -0.18 16 40 H 0.14 0.45 8.14 -2.39 -0.02 0.43 16 41 H 0.16 -0.14 8.14 -2.39 -0.02 -0.16 16 Total: -1.00 -82.12 352.13 2.73 -79.39 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: 0.26 Total: 7.04 kcal Atomic # 6 Polarization: 29.08 SS G_CDS: 6.61 Total: 35.69 kcal Atomic # 7 Polarization: -115.81 SS G_CDS: -6.02 Total: -121.83 kcal Atomic # 8 Polarization: -47.39 SS G_CDS: -0.15 Total: -47.54 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -82.12 2.73 -79.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689886167.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.657 kcal (2) G-P(sol) polarization free energy of solvation -82.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds