Wall clock time and date at job start Fri Apr 10 2020 17:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42904 * 113.99723 * 2 1 4 4 C 1.53002 * 109.47003 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.46980 * 180.02562 * 4 3 2 6 6 C 1.34819 * 126.59379 * 125.29173 * 5 4 3 7 7 C 1.36593 * 106.83574 * 180.14374 * 6 5 4 8 8 C 1.47526 * 125.76836 * 179.83925 * 7 6 5 9 9 O 1.21593 * 120.00379 * 359.71792 * 8 7 6 10 10 N 1.34777 * 120.00190 * 179.44711 * 8 7 6 11 11 C 1.46496 * 120.00344 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.47047 * 179.97438 * 11 10 8 13 13 H 1.08994 * 109.47307 * 64.99745 * 12 11 10 14 14 C 1.53008 * 109.46881 * 184.99637 * 12 11 10 15 15 N 1.46492 * 109.47057 * 304.99335 * 12 11 10 16 16 C 1.36938 * 120.00050 * 155.00030 * 15 12 11 17 17 H 1.07996 * 119.99895 * 0.02562 * 16 15 12 18 18 C 1.38815 * 120.00182 * 180.02562 * 16 15 12 19 19 N 1.31620 * 120.00194 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99943 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47217 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46776 * 120.00313 * 20 18 16 23 23 H 1.48505 * 109.47166 * 240.00229 * 20 18 16 24 24 N 1.34403 * 108.46030 * 359.58094 * 7 6 5 25 25 N 1.28757 * 109.52121 * 0.25655 * 24 7 6 26 26 H 1.08997 * 109.47290 * 59.99892 * 1 2 3 27 27 H 1.08998 * 109.46907 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46939 * 299.99676 * 1 2 3 29 29 H 1.09004 * 109.46902 * 60.00157 * 3 2 1 30 30 H 1.08996 * 109.47577 * 299.99868 * 3 2 1 31 31 H 1.08994 * 109.47084 * 59.99751 * 4 3 2 32 32 H 1.09008 * 109.47049 * 299.99996 * 4 3 2 33 33 H 1.07997 * 126.57976 * 0.02562 * 6 5 4 34 34 H 0.97004 * 119.99647 * 359.97438 * 10 8 7 35 35 H 1.08999 * 109.46681 * 299.99185 * 11 10 8 36 36 H 1.08993 * 109.47302 * 59.99555 * 11 10 8 37 37 H 1.08995 * 109.47218 * 300.00128 * 14 12 11 38 38 H 1.09003 * 109.46945 * 60.00219 * 14 12 11 39 39 H 1.09001 * 109.46918 * 179.97438 * 14 12 11 40 40 H 0.97004 * 120.00617 * 335.00919 * 15 12 11 41 41 H 0.96998 * 120.00494 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 4.1313 2.5231 0.0000 6 6 5.0298 3.0025 0.8834 7 6 5.3063 4.2867 0.5092 8 6 6.2385 5.2026 1.1936 9 8 6.8354 4.8327 2.1862 10 7 6.4326 6.4477 0.7155 11 6 7.3587 7.3571 1.3948 12 6 7.3950 8.6952 0.6538 13 1 6.4185 9.1746 0.7215 14 6 8.4528 9.6008 1.2880 15 7 7.7296 8.4651 -0.7537 16 6 7.3391 9.3675 -1.7067 17 1 6.7848 10.2491 -1.4206 18 6 7.6557 9.1492 -3.0405 19 7 8.3308 8.0745 -3.3893 20 14 7.1236 10.3806 -4.3405 21 1 6.3842 11.4944 -3.6940 22 1 8.3222 10.9187 -5.0326 23 1 6.2419 9.7080 -5.3281 24 7 4.5898 4.5729 -0.5914 25 7 3.8814 3.5497 -0.9217 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6885 1.8464 0.8900 30 1 1.6886 1.8465 -0.8899 31 1 3.8567 0.6440 -0.8908 32 1 3.8575 0.6436 0.8892 33 1 5.4488 2.4733 1.7265 34 1 5.9597 6.7414 -0.0788 35 1 7.0238 7.5178 2.4196 36 1 8.3570 6.9196 1.4032 37 1 8.2039 9.7720 2.3353 38 1 9.4294 9.1214 1.2203 39 1 8.4789 10.5539 0.7598 40 1 8.2277 7.6733 -1.0107 41 1 8.5517 7.9217 -4.3213 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690575285.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:42:43 Heat of formation + Delta-G solvation = 27.478289 kcal Electronic energy + Delta-G solvation = -23339.910157 eV Core-core repulsion = 19678.930622 eV Total energy + Delta-G solvation = -3660.979535 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.159 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.23456 -39.08248 -38.50419 -36.25167 -35.11772 -33.46957 -31.82511 -31.19958 -30.08911 -28.64443 -26.97433 -25.96782 -24.35089 -23.72743 -22.88033 -21.91194 -20.14294 -19.97423 -18.14224 -17.34486 -16.92049 -16.80407 -16.12440 -15.82756 -15.68311 -15.37270 -15.02883 -14.55574 -14.37605 -14.16988 -13.72653 -13.62596 -12.99018 -12.75922 -12.44602 -12.19743 -12.07120 -12.03450 -11.91967 -11.85901 -11.34513 -11.18521 -10.83135 -10.70435 -10.50960 -10.29456 -10.26840 -9.96326 -9.83551 -9.65877 -9.32798 -8.92426 -8.57816 -6.97100 -5.74115 -3.04208 1.05688 1.73499 1.83036 3.23064 3.45508 3.47880 3.51677 3.53887 3.57283 4.09430 4.25337 4.31688 4.61075 4.64284 4.75197 4.81562 4.83963 4.93301 5.02562 5.10347 5.18824 5.34924 5.49598 5.54118 5.63412 5.80968 5.99311 6.12081 6.18024 6.22885 6.35675 6.49079 6.60591 6.78558 6.86185 7.07838 7.73251 7.80944 8.08393 8.42893 8.53134 9.55057 10.09776 10.45063 11.47956 Molecular weight = 297.16amu Principal moments of inertia in cm(-1) A = 0.015734 B = 0.003152 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.118642 B = 8879.873475 C =10226.467553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.389 6.389 3 C 0.050 3.950 4 C 0.127 3.873 5 N -0.367 5.367 6 C 0.093 3.907 7 C -0.093 4.093 8 C 0.599 3.401 9 O -0.555 6.555 10 N -0.694 5.694 11 C 0.115 3.885 12 C 0.159 3.841 13 H 0.054 0.946 14 C -0.162 4.162 15 N -0.723 5.723 16 C -0.241 4.241 17 H 0.071 0.929 18 C -0.010 4.010 19 N -0.929 5.929 20 Si 0.905 3.095 21 H -0.281 1.281 22 H -0.293 1.293 23 H -0.291 1.291 24 N -0.188 5.188 25 N -0.065 5.065 26 H 0.046 0.954 27 H 0.091 0.909 28 H 0.044 0.956 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.108 0.892 32 H 0.113 0.887 33 H 0.205 0.795 34 H 0.419 0.581 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.039 0.961 38 H 0.049 0.951 39 H 0.058 0.942 40 H 0.385 0.615 41 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.582 -15.434 10.740 22.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.307 6.307 3 C -0.028 4.028 4 C 0.005 3.995 5 N -0.153 5.153 6 C -0.063 4.063 7 C -0.232 4.232 8 C 0.383 3.617 9 O -0.433 6.433 10 N -0.344 5.344 11 C -0.010 4.010 12 C 0.048 3.952 13 H 0.072 0.928 14 C -0.222 4.222 15 N -0.366 5.366 16 C -0.372 4.372 17 H 0.089 0.911 18 C -0.207 4.207 19 N -0.576 5.576 20 Si 0.737 3.263 21 H -0.206 1.206 22 H -0.220 1.220 23 H -0.219 1.219 24 N -0.062 5.062 25 N -0.045 5.045 26 H 0.065 0.935 27 H 0.109 0.891 28 H 0.063 0.937 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.126 0.874 32 H 0.132 0.868 33 H 0.222 0.778 34 H 0.257 0.743 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.058 0.942 38 H 0.068 0.932 39 H 0.077 0.923 40 H 0.219 0.781 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -12.927 -15.327 10.078 22.441 hybrid contribution 0.045 0.313 -0.468 0.564 sum -12.882 -15.015 9.610 21.994 Atomic orbital electron populations 1.22802 0.79713 1.03208 1.00556 1.87775 1.20754 1.26574 1.95641 1.22635 0.91998 0.85678 1.02498 1.21639 0.93085 0.78267 1.06488 1.50302 1.30717 1.13555 1.20748 1.23339 0.92236 0.94929 0.95825 1.21593 1.07085 0.95527 0.98994 1.16736 0.80457 0.81426 0.83118 1.90764 1.49829 1.76442 1.26305 1.45819 1.44748 1.12310 1.31519 1.21765 0.93056 0.90519 0.95625 1.20515 0.97062 0.91528 0.86061 0.92788 1.22362 1.00166 1.01189 0.98532 1.42466 1.66923 1.27281 0.99883 1.19244 1.29067 1.01723 0.87174 0.91073 1.24739 1.00891 0.97831 0.97193 1.69673 1.44132 1.27258 1.16586 0.86149 0.77658 0.80439 0.82096 1.20589 1.22010 1.21861 1.74772 1.03365 1.18623 1.09478 1.82037 1.20461 0.90508 1.11540 0.93506 0.89074 0.93727 0.92302 0.91132 0.87405 0.86848 0.77801 0.74293 0.91544 0.91522 0.94195 0.93191 0.92302 0.78060 0.93570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.39 -2.96 10.70 -35.23 -0.38 -3.34 16 3 C 0.05 0.36 6.14 37.16 0.23 0.59 16 4 C 0.13 0.89 6.91 -4.04 -0.03 0.86 16 5 N -0.37 -4.02 3.69 -61.06 -0.23 -4.25 16 6 C 0.09 1.07 11.27 -16.83 -0.19 0.88 16 7 C -0.09 -1.46 6.99 -83.55 -0.58 -2.04 16 8 C 0.60 10.51 7.82 -12.47 -0.10 10.41 16 9 O -0.55 -10.43 16.86 5.28 0.09 -10.34 16 10 N -0.69 -12.58 5.38 -61.36 -0.33 -12.91 16 11 C 0.11 2.00 5.23 -4.04 -0.02 1.98 16 12 C 0.16 3.05 3.05 -67.93 -0.21 2.84 16 13 H 0.05 1.04 8.08 -51.93 -0.42 0.62 16 14 C -0.16 -2.82 9.49 37.16 0.35 -2.47 16 15 N -0.72 -17.51 4.56 -53.43 -0.24 -17.76 16 16 C -0.24 -6.52 9.93 -15.06 -0.15 -6.67 16 17 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 18 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 19 N -0.93 -27.97 13.06 55.49 0.72 -27.24 16 20 Si 0.91 22.41 29.55 -169.99 -5.02 17.39 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 22 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 23 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 24 N -0.19 -3.24 12.04 32.85 0.40 -2.84 16 25 N -0.07 -0.98 13.65 60.35 0.82 -0.15 16 26 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.11 0.49 8.08 -51.92 -0.42 0.07 16 33 H 0.21 1.62 8.06 -52.49 -0.42 1.19 16 34 H 0.42 8.20 7.82 -40.82 -0.32 7.88 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 37 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.39 10.15 7.80 -40.82 -0.32 9.83 16 41 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 359.71 15.07 5.42 5.42 Total: -1.00 -33.54 359.71 -4.52 -38.06 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: -6.10 Total: 10.66 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: 0.32 Total: 7.29 kcal Atomic # 7 Polarization: -66.30 SS G_CDS: 1.14 Total: -65.15 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: -0.29 Total: -13.68 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.54 -4.52 -38.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690575285.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.542 kcal (2) G-P(sol) polarization free energy of solvation -33.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds