Wall clock time and date at job start Fri Apr 10 2020 17:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42904 * 113.99723 * 2 1 4 4 C 1.53002 * 109.47003 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.46980 * 180.02562 * 4 3 2 6 6 C 1.34819 * 126.59379 * 125.29173 * 5 4 3 7 7 C 1.36593 * 106.83574 * 180.14374 * 6 5 4 8 8 C 1.47526 * 125.76836 * 179.83925 * 7 6 5 9 9 O 1.21593 * 120.00379 * 359.71792 * 8 7 6 10 10 N 1.34777 * 120.00190 * 179.44711 * 8 7 6 11 11 C 1.46496 * 120.00344 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.47047 * 179.97438 * 11 10 8 13 13 H 1.08994 * 109.47307 * 64.99745 * 12 11 10 14 14 C 1.53008 * 109.46881 * 184.99637 * 12 11 10 15 15 N 1.46492 * 109.47057 * 304.99335 * 12 11 10 16 16 C 1.36938 * 120.00050 * 155.00030 * 15 12 11 17 17 H 1.07996 * 119.99895 * 0.02562 * 16 15 12 18 18 C 1.38815 * 120.00182 * 180.02562 * 16 15 12 19 19 N 1.31620 * 120.00194 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99943 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47217 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46776 * 120.00313 * 20 18 16 23 23 H 1.48505 * 109.47166 * 240.00229 * 20 18 16 24 24 N 1.34403 * 108.46030 * 359.58094 * 7 6 5 25 25 N 1.28757 * 109.52121 * 0.25655 * 24 7 6 26 26 H 1.08997 * 109.47290 * 59.99892 * 1 2 3 27 27 H 1.08998 * 109.46907 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46939 * 299.99676 * 1 2 3 29 29 H 1.09004 * 109.46902 * 60.00157 * 3 2 1 30 30 H 1.08996 * 109.47577 * 299.99868 * 3 2 1 31 31 H 1.08994 * 109.47084 * 59.99751 * 4 3 2 32 32 H 1.09008 * 109.47049 * 299.99996 * 4 3 2 33 33 H 1.07997 * 126.57976 * 0.02562 * 6 5 4 34 34 H 0.97004 * 119.99647 * 359.97438 * 10 8 7 35 35 H 1.08999 * 109.46681 * 299.99185 * 11 10 8 36 36 H 1.08993 * 109.47302 * 59.99555 * 11 10 8 37 37 H 1.08995 * 109.47218 * 300.00128 * 14 12 11 38 38 H 1.09003 * 109.46945 * 60.00219 * 14 12 11 39 39 H 1.09001 * 109.46918 * 179.97438 * 14 12 11 40 40 H 0.97004 * 120.00617 * 335.00919 * 15 12 11 41 41 H 0.96998 * 120.00494 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 4.1313 2.5231 0.0000 6 6 5.0298 3.0025 0.8834 7 6 5.3063 4.2867 0.5092 8 6 6.2385 5.2026 1.1936 9 8 6.8354 4.8327 2.1862 10 7 6.4326 6.4477 0.7155 11 6 7.3587 7.3571 1.3948 12 6 7.3950 8.6952 0.6538 13 1 6.4185 9.1746 0.7215 14 6 8.4528 9.6008 1.2880 15 7 7.7296 8.4651 -0.7537 16 6 7.3391 9.3675 -1.7067 17 1 6.7848 10.2491 -1.4206 18 6 7.6557 9.1492 -3.0405 19 7 8.3308 8.0745 -3.3893 20 14 7.1236 10.3806 -4.3405 21 1 6.3842 11.4944 -3.6940 22 1 8.3222 10.9187 -5.0326 23 1 6.2419 9.7080 -5.3281 24 7 4.5898 4.5729 -0.5914 25 7 3.8814 3.5497 -0.9217 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6885 1.8464 0.8900 30 1 1.6886 1.8465 -0.8899 31 1 3.8567 0.6440 -0.8908 32 1 3.8575 0.6436 0.8892 33 1 5.4488 2.4733 1.7265 34 1 5.9597 6.7414 -0.0788 35 1 7.0238 7.5178 2.4196 36 1 8.3570 6.9196 1.4032 37 1 8.2039 9.7720 2.3353 38 1 9.4294 9.1214 1.2203 39 1 8.4789 10.5539 0.7598 40 1 8.2277 7.6733 -1.0107 41 1 8.5517 7.9217 -4.3213 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690575285.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:42:42 Heat of formation + Delta-G solvation = 0.860589 kcal Electronic energy + Delta-G solvation = -23341.064387 eV Core-core repulsion = 19678.930622 eV Total energy + Delta-G solvation = -3662.133765 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.159 amu Computer time = 2.08 seconds Orbital eigenvalues (eV) -43.27975 -40.43731 -39.06792 -37.87329 -35.98989 -35.14653 -33.59838 -32.21135 -31.02445 -30.42405 -27.63565 -27.16388 -25.69344 -25.11590 -24.11587 -22.81435 -21.67930 -21.21635 -19.46699 -18.97143 -17.81545 -17.52973 -17.14958 -16.98073 -16.74695 -16.61315 -16.15418 -15.81813 -15.58193 -15.38720 -15.26609 -14.78676 -14.49263 -13.87360 -13.64045 -13.48529 -13.37169 -13.20591 -13.04726 -12.80584 -12.77295 -12.47642 -12.41634 -12.13713 -12.11138 -11.68614 -11.62702 -11.42482 -11.23225 -10.95238 -10.79996 -10.44250 -9.96245 -8.99436 -7.89482 -5.17907 0.10065 0.61127 0.93078 1.49308 1.50226 1.59397 2.18550 2.29075 2.59323 2.66401 3.19778 3.44725 3.47156 3.74815 3.78921 3.92322 3.94822 4.01861 4.09167 4.18850 4.43474 4.43868 4.47673 4.54740 4.59111 4.67163 4.76025 4.79460 4.83605 4.90820 5.10475 5.29591 5.36783 5.40837 5.58408 5.62082 5.98000 6.31400 6.47810 6.88601 7.15032 7.38516 8.11925 8.35319 9.33705 Molecular weight = 297.16amu Principal moments of inertia in cm(-1) A = 0.015734 B = 0.003152 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.118642 B = 8879.873475 C =10226.467553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.400 6.400 3 C 0.053 3.947 4 C 0.120 3.880 5 N -0.350 5.350 6 C 0.122 3.878 7 C -0.125 4.125 8 C 0.601 3.399 9 O -0.570 6.570 10 N -0.702 5.702 11 C 0.123 3.877 12 C 0.156 3.844 13 H 0.057 0.943 14 C -0.153 4.153 15 N -0.732 5.732 16 C -0.230 4.230 17 H 0.078 0.922 18 C -0.074 4.074 19 N -0.968 5.968 20 Si 0.967 3.033 21 H -0.265 1.265 22 H -0.297 1.297 23 H -0.298 1.298 24 N -0.226 5.226 25 N -0.090 5.090 26 H 0.046 0.954 27 H 0.106 0.894 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.116 0.884 32 H 0.151 0.849 33 H 0.247 0.753 34 H 0.411 0.589 35 H 0.090 0.910 36 H 0.059 0.941 37 H 0.076 0.924 38 H 0.044 0.956 39 H 0.043 0.957 40 H 0.372 0.628 41 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.446 -16.268 12.481 24.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.319 6.319 3 C -0.024 4.024 4 C 0.001 3.999 5 N -0.136 5.136 6 C -0.036 4.036 7 C -0.265 4.265 8 C 0.386 3.614 9 O -0.450 6.450 10 N -0.351 5.351 11 C -0.001 4.001 12 C 0.048 3.952 13 H 0.075 0.925 14 C -0.213 4.213 15 N -0.373 5.373 16 C -0.362 4.362 17 H 0.096 0.904 18 C -0.267 4.267 19 N -0.618 5.618 20 Si 0.797 3.203 21 H -0.189 1.189 22 H -0.225 1.225 23 H -0.226 1.226 24 N -0.100 5.100 25 N -0.070 5.070 26 H 0.065 0.935 27 H 0.124 0.876 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.135 0.865 32 H 0.169 0.831 33 H 0.263 0.737 34 H 0.247 0.753 35 H 0.108 0.892 36 H 0.077 0.923 37 H 0.095 0.905 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.204 0.796 41 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -13.834 -16.148 11.857 24.346 hybrid contribution 0.232 0.459 -0.888 1.026 sum -13.601 -15.689 10.970 23.484 Atomic orbital electron populations 1.22985 0.78623 1.04380 1.00956 1.87750 1.21990 1.26441 1.95688 1.22539 0.92233 0.85696 1.01964 1.22055 0.92809 0.76282 1.08802 1.50524 1.29800 1.13974 1.19286 1.23883 0.90591 0.93404 0.95704 1.21572 1.08186 0.97036 0.99735 1.16940 0.80363 0.81253 0.82874 1.90739 1.50636 1.76656 1.26954 1.45880 1.44880 1.12955 1.31350 1.21698 0.92803 0.89282 0.96353 1.20726 0.97603 0.93058 0.83836 0.92514 1.22217 0.99104 0.99607 1.00385 1.42610 1.66674 1.26333 1.01706 1.19606 1.27198 1.01684 0.87742 0.90383 1.25475 1.02148 0.99703 0.99330 1.69827 1.46388 1.29321 1.16312 0.85165 0.76896 0.78750 0.79502 1.18909 1.22503 1.22605 1.74743 1.04479 1.20093 1.10639 1.81942 1.20879 0.91235 1.12943 0.93493 0.87582 0.92981 0.91985 0.92652 0.86544 0.83097 0.73735 0.75285 0.89158 0.92306 0.90496 0.93693 0.93739 0.79616 0.94364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 113.37 1.25 1.49 16 2 O -0.40 -5.33 10.70 -148.98 -1.59 -6.93 16 3 C 0.05 0.70 6.14 71.98 0.44 1.14 16 4 C 0.12 1.36 6.91 86.38 0.60 1.95 16 5 N -0.35 -7.03 3.69 -347.09 -1.28 -8.31 16 6 C 0.12 2.53 11.27 83.85 0.95 3.48 16 7 C -0.13 -3.86 6.99 40.82 0.29 -3.58 16 8 C 0.60 20.81 7.82 86.69 0.68 21.49 16 9 O -0.57 -20.71 16.86 -4.01 -0.07 -20.78 16 10 N -0.70 -25.48 5.38 -466.29 -2.51 -28.00 16 11 C 0.12 4.16 5.23 86.38 0.45 4.62 16 12 C 0.16 5.88 3.05 45.00 0.14 6.01 16 13 H 0.06 2.12 8.08 -2.39 -0.02 2.10 16 14 C -0.15 -5.08 9.49 71.98 0.68 -4.39 16 15 N -0.73 -35.72 4.56 -322.95 -1.47 -37.20 16 16 C -0.23 -12.48 9.93 84.03 0.83 -11.65 16 17 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 18 C -0.07 -4.26 5.50 84.86 0.47 -3.79 16 19 N -0.97 -59.74 13.06 21.65 0.28 -59.45 16 20 Si 0.97 46.66 29.55 68.60 2.03 48.69 16 21 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 22 H -0.30 -14.45 7.11 99.48 0.71 -13.75 16 23 H -0.30 -14.61 7.11 99.48 0.71 -13.91 16 24 N -0.23 -7.88 12.04 -49.99 -0.60 -8.48 16 25 N -0.09 -2.68 13.65 37.02 0.51 -2.18 16 26 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 27 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.06 0.76 8.14 -2.38 -0.02 0.75 16 30 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.15 0.64 8.08 -2.38 -0.02 0.62 16 33 H 0.25 2.86 8.06 -2.91 -0.02 2.84 16 34 H 0.41 16.46 7.82 -92.71 -0.73 15.73 16 35 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 36 H 0.06 2.09 8.14 -2.39 -0.02 2.08 16 37 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.37 20.05 7.80 -92.71 -0.72 19.33 16 41 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 Total: -1.00 -73.65 359.71 1.66 -71.99 By element: Atomic # 1 Polarization: 34.28 SS G_CDS: -0.40 Total: 33.88 kcal Atomic # 6 Polarization: 9.99 SS G_CDS: 6.77 Total: 16.76 kcal Atomic # 7 Polarization: -138.53 SS G_CDS: -5.08 Total: -143.61 kcal Atomic # 8 Polarization: -26.05 SS G_CDS: -1.66 Total: -27.71 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.69 kcal Total: -73.65 1.66 -71.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690575285.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.853 kcal (2) G-P(sol) polarization free energy of solvation -73.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds