Wall clock time and date at job start Fri Apr 10 2020 17:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46501 * 109.47481 * 2 1 4 4 C 1.36934 * 120.00238 * 264.29436 * 3 2 1 5 5 H 1.07999 * 119.99925 * 188.63618 * 4 3 2 6 6 C 1.38815 * 119.99973 * 8.63275 * 4 3 2 7 7 N 1.31619 * 120.00085 * 24.60854 * 6 4 3 8 8 Si 1.86797 * 120.00050 * 204.60530 * 6 4 3 9 9 H 1.48494 * 109.47373 * 85.02657 * 8 6 4 10 10 H 1.48502 * 109.47071 * 205.02989 * 8 6 4 11 11 H 1.48502 * 109.47260 * 325.02403 * 8 6 4 12 12 C 1.46504 * 119.99799 * 84.28827 * 3 2 1 13 13 C 1.52996 * 109.47295 * 270.00274 * 12 3 2 14 14 N 1.46499 * 109.46947 * 180.02562 * 13 12 3 15 15 C 1.34780 * 119.99812 * 180.02562 * 14 13 12 16 16 O 1.21285 * 120.00051 * 359.97438 * 15 14 13 17 17 C 1.50698 * 120.00052 * 179.97438 * 15 14 13 18 18 N 1.46501 * 109.47101 * 179.97438 * 17 15 14 19 19 N 1.40166 * 126.35212 * 270.00247 * 18 17 15 20 20 C 1.29401 * 108.13901 * 179.76059 * 19 18 17 21 21 N 1.37356 * 108.83111 * 0.38257 * 20 19 18 22 22 C 1.46504 * 125.83565 * 179.87948 * 21 20 19 23 23 C 1.34816 * 108.33162 * 359.61162 * 21 20 19 24 24 O 1.21815 * 126.30238 * 180.19683 * 23 21 20 25 25 H 1.08996 * 109.47266 * 59.99311 * 1 2 3 26 26 H 1.08992 * 109.47479 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46772 * 300.00066 * 1 2 3 28 28 H 1.09004 * 109.46899 * 240.00474 * 2 1 3 29 29 H 1.09003 * 109.47385 * 120.00332 * 2 1 3 30 30 H 0.96999 * 120.00401 * 179.97438 * 7 6 4 31 31 H 1.09003 * 109.46765 * 150.00477 * 12 3 2 32 32 H 1.09001 * 109.46940 * 30.00672 * 12 3 2 33 33 H 1.09003 * 109.47049 * 60.00376 * 13 12 3 34 34 H 1.09001 * 109.47451 * 300.00085 * 13 12 3 35 35 H 0.96991 * 120.00416 * 0.02562 * 14 13 12 36 36 H 1.09003 * 109.46723 * 60.00222 * 17 15 14 37 37 H 1.09001 * 109.47089 * 300.00351 * 17 15 14 38 38 H 1.07998 * 125.58452 * 180.21859 * 20 19 18 39 39 H 1.09005 * 109.46845 * 269.69025 * 22 21 20 40 40 H 1.09000 * 109.46933 * 149.68594 * 22 21 20 41 41 H 1.09004 * 109.46870 * 29.68430 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3578 1.9874 -1.1800 5 1 2.8471 2.9502 -1.1712 6 6 2.0731 1.3645 -2.3874 7 7 1.0958 0.4859 -2.4603 8 14 3.0770 1.7732 -3.9088 9 1 4.3045 0.9379 -3.9310 10 1 2.2688 1.4978 -5.1238 11 1 3.4556 3.2088 -3.8811 12 6 2.1435 2.1139 1.2625 13 6 0.8339 2.8474 1.5585 14 7 0.9594 3.5805 2.8206 15 6 -0.0782 4.3044 3.2855 16 8 -1.1155 4.3492 2.6586 17 6 0.0506 5.0580 4.5841 18 7 -1.2034 5.7605 4.8674 19 7 -1.5357 7.0618 4.4664 20 6 -2.7255 7.3259 4.9010 21 7 -3.1972 6.2363 5.5917 22 6 -4.5056 6.1342 6.2429 23 6 -2.2527 5.2747 5.5629 24 8 -2.3318 4.1707 6.0716 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8900 30 1 0.8966 0.0508 -3.3040 31 1 2.9553 2.8371 1.1839 32 1 2.3580 1.4132 2.0694 33 1 0.0222 2.1242 1.6371 34 1 0.6195 3.5481 0.7515 35 1 1.7890 3.5450 3.3218 36 1 0.8621 5.7815 4.5053 37 1 0.2654 4.3574 5.3910 38 1 -3.2592 8.2523 4.7482 39 1 -4.4262 6.4795 7.2738 40 1 -4.8368 5.0958 6.2319 41 1 -5.2270 6.7514 5.7075 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691028567.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:42:58 Heat of formation + Delta-G solvation = 50.213867 kcal Electronic energy + Delta-G solvation = -23990.230565 eV Core-core repulsion = 20330.236918 eV Total energy + Delta-G solvation = -3659.993646 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.159 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.54440 -39.35790 -37.34633 -36.46172 -35.38284 -34.27987 -32.11611 -31.34610 -29.74083 -28.74841 -27.65816 -26.57113 -24.02571 -22.94882 -21.89706 -21.36768 -20.58411 -20.02008 -17.86367 -17.53732 -16.78215 -16.36600 -16.26332 -15.93267 -15.38932 -15.05759 -14.88413 -14.45876 -13.96659 -13.93665 -13.45996 -13.31794 -13.05524 -12.84886 -12.61606 -12.24769 -12.06987 -11.97932 -11.84054 -11.39651 -11.07391 -10.77421 -10.62790 -10.52211 -10.39836 -10.32838 -9.91602 -9.78165 -9.58497 -9.37260 -8.68126 -8.63178 -8.36578 -6.93589 -5.76855 -3.09809 1.51549 1.80702 2.55809 2.77648 2.91222 3.40001 3.45036 3.48336 3.51478 4.21745 4.50706 4.51493 4.72654 4.83973 4.90129 4.96596 5.18118 5.20037 5.32769 5.56166 5.63170 5.85178 5.87739 5.96665 6.26103 6.33005 6.54662 6.66253 6.69731 6.89219 6.95026 7.13369 7.18372 7.44372 7.66773 7.72106 7.78889 7.91499 8.13205 8.34755 8.43706 9.22901 9.84542 10.28856 11.26705 Molecular weight = 297.16amu Principal moments of inertia in cm(-1) A = 0.027026 B = 0.002889 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.793914 B = 9689.136222 C = 9915.647816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.166 3.834 3 N -0.591 5.591 4 C -0.255 4.255 5 H 0.075 0.925 6 C -0.001 4.001 7 N -0.894 5.894 8 Si 0.900 3.100 9 H -0.288 1.288 10 H -0.293 1.293 11 H -0.282 1.282 12 C 0.144 3.856 13 C 0.091 3.909 14 N -0.721 5.721 15 C 0.489 3.511 16 O -0.529 6.529 17 C 0.142 3.858 18 N -0.436 5.436 19 N -0.272 5.272 20 C 0.253 3.747 21 N -0.562 5.562 22 C 0.100 3.900 23 C 0.652 3.348 24 O -0.553 6.553 25 H 0.090 0.910 26 H 0.020 0.980 27 H 0.014 0.986 28 H 0.089 0.911 29 H 0.004 0.996 30 H 0.253 0.747 31 H 0.050 0.950 32 H 0.043 0.957 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.396 0.604 36 H 0.124 0.876 37 H 0.123 0.877 38 H 0.231 0.769 39 H 0.072 0.928 40 H 0.087 0.913 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.686 13.038 18.409 23.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.041 3.959 3 N -0.312 5.312 4 C -0.384 4.384 5 H 0.093 0.907 6 C -0.199 4.199 7 N -0.539 5.539 8 Si 0.730 3.270 9 H -0.216 1.216 10 H -0.219 1.219 11 H -0.207 1.207 12 C 0.015 3.985 13 C -0.035 4.035 14 N -0.373 5.373 15 C 0.272 3.728 16 O -0.404 6.404 17 C 0.017 3.983 18 N -0.256 5.256 19 N -0.092 5.092 20 C -0.046 4.046 21 N -0.292 5.292 22 C -0.042 4.042 23 C 0.351 3.649 24 O -0.426 6.426 25 H 0.109 0.891 26 H 0.039 0.961 27 H 0.033 0.967 28 H 0.107 0.893 29 H 0.022 0.978 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.230 0.770 36 H 0.142 0.858 37 H 0.141 0.859 38 H 0.247 0.753 39 H 0.091 0.909 40 H 0.106 0.894 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.674 12.452 17.601 22.295 hybrid contribution -0.045 0.028 -0.338 0.342 sum -5.720 12.481 17.263 22.057 Atomic orbital electron populations 1.22434 0.99174 0.98326 1.01247 1.20856 0.92530 0.84188 0.98326 1.44255 1.75504 1.10094 1.01365 1.19289 1.31706 1.03901 0.83460 0.90721 1.24759 0.97777 0.99928 0.97426 1.70167 1.27051 1.31718 1.25005 0.86327 0.80186 0.77863 0.82621 1.21553 1.21949 1.20724 1.20956 0.93582 0.94441 0.89501 1.22766 1.02249 0.95401 0.83055 1.46119 1.15481 1.49974 1.25743 1.20840 0.84560 0.80232 0.87148 1.90741 1.28523 1.62379 1.58806 1.21278 0.83120 0.96578 0.97369 1.48191 1.15984 1.11506 1.49874 1.76980 1.13870 0.97171 1.21218 1.25899 0.91794 0.93883 0.93054 1.45851 1.17828 1.14843 1.50642 1.21812 0.79961 1.04963 0.97461 1.16646 0.81374 0.84528 0.82307 1.91085 1.80043 1.18033 1.53423 0.89104 0.96121 0.96750 0.89283 0.97789 0.93706 0.93135 0.93821 0.91616 0.91506 0.77038 0.85797 0.85911 0.75287 0.90908 0.89422 0.89316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.67 9.58 37.16 0.36 -3.31 16 2 C 0.17 4.03 5.64 -4.04 -0.02 4.00 16 3 N -0.59 -14.44 2.54 -173.23 -0.44 -14.88 16 4 C -0.25 -6.83 9.70 -15.06 -0.15 -6.97 16 5 H 0.07 1.96 7.93 -52.49 -0.42 1.55 16 6 C 0.00 -0.04 4.91 -17.43 -0.09 -0.12 16 7 N -0.89 -25.14 8.54 55.49 0.47 -24.67 16 8 Si 0.90 21.58 29.62 -169.99 -5.03 16.54 16 9 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 10 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 C 0.14 2.81 5.82 -4.04 -0.02 2.78 16 13 C 0.09 1.78 5.88 -4.04 -0.02 1.75 16 14 N -0.72 -10.83 5.56 -60.29 -0.33 -11.17 16 15 C 0.49 8.05 7.90 -10.99 -0.09 7.96 16 16 O -0.53 -11.51 16.43 5.55 0.09 -11.42 16 17 C 0.14 1.71 6.87 -5.19 -0.04 1.67 16 18 N -0.44 -6.11 3.11 -66.31 -0.21 -6.32 16 19 N -0.27 -3.33 12.53 29.87 0.37 -2.95 16 20 C 0.25 2.12 12.66 -89.12 -1.13 1.00 16 21 N -0.56 -5.78 3.14 -130.10 -0.41 -6.19 16 22 C 0.10 0.59 11.05 59.85 0.66 1.25 16 23 C 0.65 9.74 8.60 -86.74 -0.75 8.99 16 24 O -0.55 -10.03 17.71 5.09 0.09 -9.94 16 25 H 0.09 2.48 6.28 -51.93 -0.33 2.16 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.01 0.32 5.98 -51.93 -0.31 0.01 16 28 H 0.09 2.39 5.87 -51.93 -0.31 2.08 16 29 H 0.00 0.09 7.97 -51.93 -0.41 -0.33 16 30 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 31 H 0.05 0.92 8.03 -51.93 -0.42 0.51 16 32 H 0.04 0.77 7.95 -51.93 -0.41 0.35 16 33 H 0.07 1.46 5.93 -51.93 -0.31 1.15 16 34 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 35 H 0.40 4.27 8.47 -40.82 -0.35 3.93 16 36 H 0.12 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.12 1.22 8.11 -51.93 -0.42 0.79 16 38 H 0.23 0.56 8.06 -52.49 -0.42 0.14 16 39 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.09 0.65 8.08 -51.93 -0.42 0.23 16 41 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 LS Contribution 346.79 15.07 5.23 5.23 Total: -1.00 -38.44 346.79 -7.22 -45.65 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -5.77 Total: 1.10 kcal Atomic # 6 Polarization: 20.29 SS G_CDS: -1.28 Total: 19.01 kcal Atomic # 7 Polarization: -65.63 SS G_CDS: -0.54 Total: -66.17 kcal Atomic # 8 Polarization: -21.54 SS G_CDS: 0.18 Total: -21.36 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.54 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -38.44 -7.22 -45.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691028567.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.869 kcal (2) G-P(sol) polarization free energy of solvation -38.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds