Wall clock time and date at job start Fri Apr 10 2020 17:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.46954 * 2 1 4 4 N 1.46496 * 109.46933 * 180.02562 * 3 2 1 5 5 C 1.36940 * 120.00081 * 180.02562 * 4 3 2 6 6 H 1.08004 * 119.99791 * 359.97438 * 5 4 3 7 7 C 1.38811 * 120.00044 * 180.02562 * 5 4 3 8 8 N 1.31619 * 120.00135 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 119.99790 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47041 * 90.00031 * 9 7 5 11 11 H 1.48495 * 109.46913 * 209.99548 * 9 7 5 12 12 H 1.48497 * 109.47133 * 329.99905 * 9 7 5 13 13 N 1.46502 * 109.47167 * 119.99611 * 2 1 3 14 14 C 1.34777 * 119.99977 * 295.81461 * 13 2 1 15 15 O 1.21277 * 120.00064 * 4.97735 * 14 13 2 16 16 C 1.50701 * 119.99996 * 184.96892 * 14 13 2 17 17 H 1.09002 * 110.50334 * 42.74685 * 16 14 13 18 18 C 1.54084 * 110.56821 * 280.00584 * 16 14 13 19 19 O 1.45705 * 104.00642 * 241.42643 * 18 16 14 20 20 C 1.33767 * 109.47715 * 359.97438 * 19 18 16 21 21 O 1.21507 * 123.06901 * 179.97438 * 20 19 18 22 22 N 1.34000 * 113.85909 * 0.02562 * 20 19 18 23 23 C 1.52996 * 109.47506 * 239.99695 * 2 1 3 24 24 C 1.53008 * 117.49694 * 12.66741 * 23 2 1 25 25 C 1.52996 * 60.00003 * 252.51273 * 24 23 2 26 26 H 1.09006 * 109.47136 * 300.00087 * 1 2 3 27 27 H 1.09001 * 109.47356 * 60.00177 * 1 2 3 28 28 H 1.09000 * 109.47026 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46917 * 299.99523 * 3 2 1 30 30 H 1.08997 * 109.47429 * 60.00204 * 3 2 1 31 31 H 0.97000 * 120.00556 * 359.97438 * 4 3 2 32 32 H 0.97001 * 119.99444 * 180.02562 * 8 7 5 33 33 H 0.97008 * 119.99990 * 116.09027 * 13 2 1 34 34 H 1.08994 * 110.52242 * 0.05514 * 18 16 14 35 35 H 1.09004 * 110.52542 * 122.79677 * 18 16 14 36 36 H 0.97003 * 125.56135 * 179.97438 * 22 20 19 37 37 H 1.09002 * 115.55342 * 158.37297 * 23 2 1 38 38 H 1.09000 * 117.49501 * 0.02562 * 24 23 2 39 39 H 1.08997 * 117.49951 * 145.01811 * 24 23 2 40 40 H 1.08998 * 117.49943 * 252.51309 * 25 24 23 41 41 H 1.09000 * 117.49933 * 107.49244 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.1896 2.6285 -0.0002 6 1 3.6496 3.5638 0.0002 7 6 5.5777 2.6284 -0.0013 8 7 6.2358 1.4886 -0.0023 9 14 6.5117 4.2463 -0.0015 10 1 6.7603 4.6744 1.3986 11 1 7.8087 4.0689 -0.7025 12 1 5.7086 5.2814 -0.7005 13 7 2.0183 -0.6905 1.1962 14 6 1.7637 -0.1829 2.4185 15 8 1.0550 0.7945 2.5336 16 6 2.3596 -0.8299 3.6422 17 1 3.4015 -1.0961 3.4643 18 6 1.5451 -2.0733 4.0481 19 8 1.0594 -1.7558 5.3846 20 6 1.4934 -0.5415 5.7402 21 8 1.2313 -0.0311 6.8112 22 7 2.2427 0.0610 4.8068 23 6 2.0400 -0.7213 -1.2491 24 6 1.0271 -1.0173 -2.3571 25 6 1.5591 -2.1548 -1.4830 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.6766 1.9563 -0.8901 30 1 1.6767 1.9564 0.8900 31 1 3.9900 0.6025 -0.0006 32 1 7.2058 1.4887 -0.0027 33 1 2.5283 -1.5110 1.1084 34 1 0.7101 -2.2232 3.3637 35 1 2.1832 -2.9567 4.0732 36 1 2.6427 0.9412 4.8862 37 1 3.0587 -0.4767 -1.5503 38 1 -0.0025 -0.6978 -2.1961 39 1 1.3792 -0.9673 -3.3874 40 1 2.2613 -2.8532 -1.9383 41 1 0.8794 -2.5840 -0.7469 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698640251.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:43:16 Heat of formation + Delta-G solvation = -56.631741 kcal Electronic energy + Delta-G solvation = -25314.044176 eV Core-core repulsion = 21617.124605 eV Total energy + Delta-G solvation = -3696.919571 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.152 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.85523 -40.07998 -37.98766 -37.11280 -34.92874 -34.54423 -33.67066 -31.57114 -30.19705 -29.24791 -25.99675 -24.92335 -23.55897 -22.47516 -22.41506 -22.16473 -20.56868 -19.04622 -18.21609 -18.00644 -17.26403 -17.06947 -16.19706 -15.84225 -15.30434 -14.95812 -14.71597 -14.46774 -14.38169 -14.10953 -13.89293 -13.52051 -13.33144 -12.91881 -12.60526 -12.33562 -12.22472 -11.98183 -11.52424 -11.18822 -11.05097 -10.91187 -10.86192 -10.84213 -10.74836 -10.31221 -10.15631 -10.08174 -9.92718 -9.75021 -9.19482 -8.87341 -8.79552 -6.93433 -5.82602 -3.08961 2.42337 2.56964 2.68039 3.06202 3.40279 3.46496 3.47348 3.48898 3.90175 3.97468 4.42483 4.55052 4.56286 4.68433 4.84359 4.97008 5.06162 5.08174 5.22142 5.26584 5.33889 5.53694 5.58442 5.67149 5.87298 5.93218 6.07568 6.13737 6.16645 6.32108 6.40826 6.57260 6.71269 6.76489 6.96209 7.12427 7.62350 7.67977 8.02149 8.29925 8.37208 9.49176 10.05450 10.41576 11.40362 Molecular weight = 297.15amu Principal moments of inertia in cm(-1) A = 0.010961 B = 0.005887 C = 0.004248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2553.912515 B = 4754.841758 C = 6589.241618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.203 3.797 3 C 0.141 3.859 4 N -0.726 5.726 5 C -0.232 4.232 6 H 0.068 0.932 7 C -0.014 4.014 8 N -0.936 5.936 9 Si 0.905 3.095 10 H -0.291 1.291 11 H -0.292 1.292 12 H -0.282 1.282 13 N -0.704 5.704 14 C 0.513 3.487 15 O -0.512 6.512 16 C 0.074 3.926 17 H 0.130 0.870 18 C 0.055 3.945 19 O -0.327 6.327 20 C 0.651 3.349 21 O -0.523 6.523 22 N -0.704 5.704 23 C -0.150 4.150 24 C -0.172 4.172 25 C -0.183 4.183 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.053 0.947 29 H 0.025 0.975 30 H 0.048 0.952 31 H 0.382 0.618 32 H 0.254 0.746 33 H 0.399 0.601 34 H 0.108 0.892 35 H 0.118 0.882 36 H 0.443 0.557 37 H 0.123 0.877 38 H 0.099 0.901 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.136 -12.357 -0.127 15.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.118 3.882 3 C 0.013 3.987 4 N -0.370 5.370 5 C -0.363 4.363 6 H 0.086 0.914 7 C -0.210 4.210 8 N -0.586 5.586 9 Si 0.736 3.264 10 H -0.218 1.218 11 H -0.218 1.218 12 H -0.208 1.208 13 N -0.355 5.355 14 C 0.295 3.705 15 O -0.387 6.387 16 C -0.036 4.036 17 H 0.147 0.853 18 C -0.021 4.021 19 O -0.237 6.237 20 C 0.403 3.597 21 O -0.408 6.408 22 N -0.376 5.376 23 C -0.169 4.169 24 C -0.209 4.209 25 C -0.220 4.220 26 H 0.094 0.906 27 H 0.086 0.914 28 H 0.072 0.928 29 H 0.043 0.957 30 H 0.066 0.934 31 H 0.216 0.784 32 H 0.063 0.937 33 H 0.233 0.767 34 H 0.126 0.874 35 H 0.136 0.864 36 H 0.288 0.712 37 H 0.141 0.859 38 H 0.118 0.882 39 H 0.112 0.888 40 H 0.112 0.888 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -9.975 -11.495 0.636 15.233 hybrid contribution 1.498 0.676 -0.403 1.692 sum -8.478 -10.819 0.233 13.747 Atomic orbital electron populations 1.22284 0.94666 1.01649 1.03529 1.20077 0.93043 0.93280 0.81844 1.21089 0.86539 0.91507 0.99553 1.42227 0.99075 1.06174 1.89545 1.19230 0.88995 0.86213 1.41884 0.91369 1.24663 0.96279 0.96724 1.03296 1.69635 1.06706 1.23807 1.58448 0.86218 0.79421 0.83239 0.77521 1.21825 1.21838 1.20814 1.45887 1.56626 1.28033 1.04953 1.20214 0.81355 0.84731 0.84160 1.90705 1.36607 1.25467 1.85913 1.22361 1.03144 0.90656 0.87447 0.85264 1.24259 0.99314 0.96835 0.81675 1.87264 1.69870 1.33110 1.33430 1.18397 0.77317 0.79692 0.84287 1.91077 1.61851 1.65327 1.22562 1.45656 1.55065 1.21994 1.14901 1.22572 1.00879 0.96962 0.96503 1.23054 0.99266 1.02665 0.95960 1.22952 1.03985 0.91501 1.03573 0.90586 0.91426 0.92820 0.95696 0.93446 0.78441 0.93665 0.76704 0.87392 0.86365 0.71214 0.85875 0.88231 0.88826 0.88843 0.88987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 7.10 37.16 0.26 -1.80 16 2 C 0.20 2.88 0.54 -131.82 -0.07 2.81 16 3 C 0.14 2.76 4.90 -4.04 -0.02 2.74 16 4 N -0.73 -16.93 5.04 -59.91 -0.30 -17.23 16 5 C -0.23 -6.27 9.99 -15.06 -0.15 -6.43 16 6 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 7 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 8 N -0.94 -26.72 13.06 55.49 0.72 -26.00 16 9 Si 0.90 22.08 29.55 -169.99 -5.02 17.06 16 10 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 N -0.70 -8.69 4.74 -47.61 -0.23 -8.91 16 14 C 0.51 7.07 6.37 -10.98 -0.07 7.00 16 15 O -0.51 -9.11 12.80 5.56 0.07 -9.04 16 16 C 0.07 0.80 4.18 -68.19 -0.28 0.51 16 17 H 0.13 1.13 8.14 -51.93 -0.42 0.71 16 18 C 0.05 0.45 7.87 37.72 0.30 0.74 16 19 O -0.33 -4.19 11.09 -37.82 -0.42 -4.61 16 20 C 0.65 9.94 9.16 53.71 0.49 10.43 16 21 O -0.52 -9.95 18.04 -19.11 -0.34 -10.30 16 22 N -0.70 -9.37 5.63 -59.36 -0.33 -9.70 16 23 C -0.15 -1.97 4.87 -90.62 -0.44 -2.41 16 24 C -0.17 -1.88 9.63 -26.73 -0.26 -2.13 16 25 C -0.18 -1.79 9.71 -26.73 -0.26 -2.05 16 26 H 0.08 1.12 6.31 -51.93 -0.33 0.79 16 27 H 0.07 0.81 6.78 -51.93 -0.35 0.46 16 28 H 0.05 0.57 6.99 -51.93 -0.36 0.21 16 29 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.05 1.04 6.04 -51.93 -0.31 0.73 16 31 H 0.38 9.04 6.62 -40.82 -0.27 8.77 16 32 H 0.25 7.08 8.31 -40.82 -0.34 6.75 16 33 H 0.40 3.83 8.38 -40.82 -0.34 3.49 16 34 H 0.11 0.75 7.72 -51.93 -0.40 0.35 16 35 H 0.12 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.44 5.97 8.96 -40.82 -0.37 5.60 16 37 H 0.12 2.01 7.08 -51.93 -0.37 1.64 16 38 H 0.10 1.01 5.88 -51.93 -0.31 0.70 16 39 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.09 0.78 7.35 -51.93 -0.38 0.40 16 LS Contribution 336.06 15.07 5.06 5.06 Total: -1.00 -34.55 336.06 -6.84 -41.39 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: -5.45 Total: 13.34 kcal Atomic # 6 Polarization: 9.54 SS G_CDS: -0.60 Total: 8.94 kcal Atomic # 7 Polarization: -61.71 SS G_CDS: -0.14 Total: -61.84 kcal Atomic # 8 Polarization: -23.25 SS G_CDS: -0.69 Total: -23.95 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -34.55 -6.84 -41.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698640251.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.245 kcal (2) G-P(sol) polarization free energy of solvation -34.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds