Wall clock time and date at job start Fri Apr 10 2020 17:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99728 * 2 1 3 5 5 C 1.53001 * 109.46997 * 174.99904 * 4 2 1 6 6 N 1.46504 * 109.46748 * 179.97438 * 5 4 2 7 7 C 1.36936 * 119.99458 * 180.02562 * 6 5 4 8 8 H 1.08004 * 120.00538 * 359.97438 * 7 6 5 9 9 C 1.38819 * 119.99842 * 180.02562 * 7 6 5 10 10 N 1.31616 * 119.99572 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00006 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47260 * 59.99736 * 11 9 7 13 13 H 1.48499 * 109.47067 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.47125 * 299.99686 * 11 9 7 15 15 N 1.46500 * 109.46998 * 119.99942 * 2 1 3 16 16 C 1.34773 * 119.99910 * 275.00232 * 15 2 1 17 17 O 1.21288 * 120.00271 * 359.97438 * 16 15 2 18 18 C 1.50699 * 119.99928 * 179.97438 * 16 15 2 19 19 C 1.53002 * 109.47295 * 179.97438 * 18 16 15 20 20 H 1.09003 * 110.54055 * 56.39195 * 19 18 16 21 21 C 1.54227 * 110.60946 * 179.41238 * 19 18 16 22 22 C 1.51309 * 103.55853 * 118.51460 * 21 19 18 23 23 O 1.21226 * 125.39999 * 179.97438 * 22 21 19 24 24 N 1.33881 * 109.20784 * 0.02562 * 22 21 19 25 25 C 1.33882 * 114.47260 * 359.97438 * 24 22 21 26 26 O 1.21222 * 125.39552 * 180.02562 * 25 24 22 27 27 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 28 28 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 30 30 H 1.08993 * 109.47322 * 295.00205 * 4 2 1 31 31 H 1.09002 * 109.47196 * 55.00329 * 4 2 1 32 32 H 1.08993 * 109.47331 * 300.00296 * 5 4 2 33 33 H 1.09001 * 109.46791 * 60.00740 * 5 4 2 34 34 H 0.96992 * 120.00104 * 0.02562 * 6 5 4 35 35 H 0.97004 * 119.99275 * 180.02562 * 10 9 7 36 36 H 0.96995 * 120.00293 * 94.99410 * 15 2 1 37 37 H 1.09000 * 109.47712 * 299.99892 * 18 16 15 38 38 H 1.08995 * 109.47183 * 60.00106 * 18 16 15 39 39 H 1.09002 * 110.60682 * 237.03379 * 21 19 18 40 40 H 1.09001 * 110.60462 * 359.97438 * 21 19 18 41 41 H 0.97001 * 122.76766 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 7 4.0532 -1.3045 -2.5095 7 6 5.3953 -1.3414 -2.7788 8 1 6.0938 -0.8606 -2.1099 9 6 5.8581 -1.9959 -3.9122 10 7 5.0069 -2.5813 -4.7275 11 14 7.6888 -2.0455 -4.2799 12 1 8.4002 -2.7167 -3.1625 13 1 7.9207 -2.7999 -5.5378 14 1 8.2010 -0.6600 -4.4316 15 7 2.0184 -0.6906 1.1962 16 6 2.1470 -0.0182 2.3571 17 8 1.8590 1.1587 2.4115 18 6 2.6488 -0.7288 3.5877 19 6 2.7009 0.2545 4.7588 20 1 1.7226 0.7065 4.9225 21 6 3.1979 -0.4501 6.0376 22 6 4.4713 0.2922 6.3795 23 8 5.1890 0.0557 7.3273 24 7 4.6792 1.2523 5.4699 25 6 3.7456 1.3212 4.5128 26 8 3.7384 2.1125 3.5945 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.7517 -1.7715 -1.2055 31 1 1.6055 -0.2618 -2.1370 32 1 3.8532 0.4369 -1.3573 33 1 3.9995 -1.0729 -0.4259 34 1 3.4259 -1.7360 -3.1104 35 1 5.3303 -3.0390 -5.5193 36 1 2.2490 -1.6317 1.1527 37 1 1.9759 -1.5506 3.8326 38 1 3.6479 -1.1213 3.3987 39 1 2.4673 -0.3485 6.8401 40 1 3.4075 -1.5012 5.8395 41 1 5.4433 1.8490 5.5017 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699160808.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:43:26 Heat of formation + Delta-G solvation = -102.430008 kcal Electronic energy + Delta-G solvation = -23859.966353 eV Core-core repulsion = 20161.060820 eV Total energy + Delta-G solvation = -3698.905533 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.152 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.13741 -39.78181 -38.72771 -36.58450 -36.11193 -34.35263 -33.85534 -31.96274 -30.76057 -28.83014 -27.86308 -25.48152 -23.99463 -22.28732 -21.91388 -21.31033 -20.56848 -20.18988 -18.20934 -17.46444 -17.05875 -16.79805 -16.50435 -15.96301 -15.59855 -14.98424 -14.68415 -14.36731 -14.20313 -14.10773 -13.86463 -13.47624 -13.37300 -13.28304 -13.08402 -12.80821 -12.48212 -12.23819 -11.81380 -11.71482 -11.20128 -11.02252 -10.98858 -10.77492 -10.62868 -10.56653 -10.56084 -10.21359 -10.07128 -9.72632 -9.69008 -8.95937 -8.84758 -6.93216 -5.77542 -3.06189 1.22425 2.42624 2.47794 2.69715 3.13013 3.43672 3.48017 3.49195 3.70009 3.85249 3.98990 4.24648 4.56824 4.66038 4.83361 4.90872 4.99320 5.09801 5.17121 5.28090 5.37968 5.41282 5.54838 5.68763 5.72591 5.77249 5.94479 6.05555 6.24357 6.28781 6.33654 6.35011 6.58643 6.81807 6.87912 7.01098 7.57140 7.60969 7.69058 8.30398 8.41750 9.52679 10.10508 10.45287 11.45367 Molecular weight = 297.15amu Principal moments of inertia in cm(-1) A = 0.014476 B = 0.003311 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.819112 B = 8453.474931 C = 9819.498630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.146 3.854 3 H 0.088 0.912 4 C -0.134 4.134 5 C 0.155 3.845 6 N -0.734 5.734 7 C -0.240 4.240 8 H 0.069 0.931 9 C -0.014 4.014 10 N -0.935 5.935 11 Si 0.907 3.093 12 H -0.286 1.286 13 H -0.290 1.290 14 H -0.286 1.286 15 N -0.720 5.720 16 C 0.503 3.497 17 O -0.516 6.516 18 C -0.131 4.131 19 C -0.108 4.108 20 H 0.132 0.868 21 C -0.156 4.156 22 C 0.531 3.469 23 O -0.490 6.490 24 N -0.685 5.685 25 C 0.521 3.479 26 O -0.437 6.437 27 H 0.065 0.935 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.018 0.982 33 H 0.017 0.983 34 H 0.383 0.617 35 H 0.256 0.744 36 H 0.400 0.600 37 H 0.113 0.887 38 H 0.100 0.900 39 H 0.124 0.876 40 H 0.124 0.876 41 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.861 2.191 21.936 24.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.041 3.959 3 H 0.107 0.893 4 C -0.173 4.173 5 C 0.027 3.973 6 N -0.378 5.378 7 C -0.371 4.371 8 H 0.087 0.913 9 C -0.210 4.210 10 N -0.583 5.583 11 Si 0.738 3.262 12 H -0.213 1.213 13 H -0.216 1.216 14 H -0.212 1.212 15 N -0.373 5.373 16 C 0.288 3.712 17 O -0.391 6.391 18 C -0.171 4.171 19 C -0.130 4.130 20 H 0.150 0.850 21 C -0.195 4.195 22 C 0.318 3.682 23 O -0.362 6.362 24 N -0.352 5.352 25 C 0.306 3.694 26 O -0.303 6.303 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.036 0.964 33 H 0.035 0.965 34 H 0.217 0.783 35 H 0.065 0.935 36 H 0.234 0.766 37 H 0.131 0.869 38 H 0.118 0.882 39 H 0.142 0.858 40 H 0.142 0.858 41 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -9.670 3.294 21.932 24.194 hybrid contribution 1.396 -0.419 -0.525 1.550 sum -8.273 2.875 21.407 23.130 Atomic orbital electron populations 1.22147 0.95531 1.01844 1.02243 1.20956 0.93433 0.97781 0.83729 0.89345 1.22057 0.98003 1.00716 0.96491 1.20623 0.90416 0.95608 0.90645 1.42361 1.05342 1.64938 1.25185 1.19192 0.83864 1.28527 1.05566 0.91335 1.24738 0.97718 1.00898 0.97621 1.69650 1.32875 1.40663 1.15139 0.86263 0.85101 0.77528 0.77279 1.21285 1.21634 1.21235 1.46069 1.67442 1.14093 1.09667 1.20345 0.78695 0.87579 0.84611 1.90803 1.48526 1.14966 1.84779 1.21631 1.04663 0.98628 0.92196 1.21812 1.01216 0.95188 0.94735 0.85037 1.22605 0.95943 1.02241 0.98752 1.20753 0.87174 0.79537 0.80692 1.90821 1.50957 1.66613 1.27855 1.44890 1.27681 1.34803 1.27803 1.20690 0.82627 0.85235 0.80820 1.90932 1.73700 1.37102 1.28526 0.91646 0.92618 0.92457 0.91423 0.90333 0.96444 0.96491 0.78331 0.93461 0.76562 0.86919 0.88180 0.85812 0.85768 0.74619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.77 9.48 37.16 0.35 -1.42 16 2 C 0.15 1.91 2.57 -67.93 -0.17 1.73 16 3 H 0.09 1.38 7.58 -51.93 -0.39 0.98 16 4 C -0.13 -2.04 4.87 -26.73 -0.13 -2.17 16 5 C 0.15 3.09 6.15 -4.04 -0.02 3.07 16 6 N -0.73 -18.64 5.60 -59.90 -0.34 -18.98 16 7 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 8 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 9 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 10 N -0.93 -28.29 13.06 55.49 0.72 -27.56 16 11 Si 0.91 22.55 29.55 -169.99 -5.02 17.53 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 14 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 15 N -0.72 -8.10 4.53 -53.80 -0.24 -8.34 16 16 C 0.50 5.76 7.47 -10.99 -0.08 5.68 16 17 O -0.52 -7.94 13.23 -17.45 -0.23 -8.17 16 18 C -0.13 -0.86 5.04 -27.88 -0.14 -1.00 16 19 C -0.11 -0.70 2.72 -90.83 -0.25 -0.95 16 20 H 0.13 0.80 8.03 -51.93 -0.42 0.38 16 21 C -0.16 -0.64 6.67 -26.94 -0.18 -0.82 16 22 C 0.53 4.14 8.55 -11.09 -0.09 4.04 16 23 O -0.49 -5.52 18.02 5.60 0.10 -5.42 16 24 N -0.69 -5.57 5.48 -11.39 -0.06 -5.64 16 25 C 0.52 5.30 7.71 -11.08 -0.09 5.21 16 26 O -0.44 -6.61 15.42 -17.40 -0.27 -6.88 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.02 0.34 7.75 -51.93 -0.40 -0.06 16 34 H 0.38 10.12 7.67 -40.82 -0.31 9.81 16 35 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 36 H 0.40 3.74 8.60 -40.82 -0.35 3.39 16 37 H 0.11 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.12 0.25 8.14 -51.93 -0.42 -0.17 16 40 H 0.12 0.29 7.74 -51.93 -0.40 -0.12 16 41 H 0.41 3.01 8.96 -40.82 -0.37 2.65 16 LS Contribution 348.68 15.07 5.25 5.25 Total: -1.00 -37.63 348.68 -7.13 -44.76 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -6.00 Total: 7.52 kcal Atomic # 6 Polarization: 6.98 SS G_CDS: -1.05 Total: 5.92 kcal Atomic # 7 Polarization: -60.60 SS G_CDS: 0.08 Total: -60.52 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -0.40 Total: -20.47 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -37.63 -7.13 -44.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699160808.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.672 kcal (2) G-P(sol) polarization free energy of solvation -37.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds