Wall clock time and date at job start Fri Apr 10 2020 17:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99728 * 2 1 3 5 5 C 1.53001 * 109.46997 * 174.99904 * 4 2 1 6 6 N 1.46504 * 109.46748 * 179.97438 * 5 4 2 7 7 C 1.36936 * 119.99458 * 180.02562 * 6 5 4 8 8 H 1.08004 * 120.00538 * 359.97438 * 7 6 5 9 9 C 1.38819 * 119.99842 * 180.02562 * 7 6 5 10 10 N 1.31616 * 119.99572 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00006 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47260 * 59.99736 * 11 9 7 13 13 H 1.48499 * 109.47067 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.47125 * 299.99686 * 11 9 7 15 15 N 1.46500 * 109.46998 * 119.99942 * 2 1 3 16 16 C 1.34773 * 119.99910 * 275.00232 * 15 2 1 17 17 O 1.21288 * 120.00271 * 359.97438 * 16 15 2 18 18 C 1.50699 * 119.99928 * 179.97438 * 16 15 2 19 19 C 1.53002 * 109.47295 * 179.97438 * 18 16 15 20 20 H 1.09003 * 110.54055 * 56.39195 * 19 18 16 21 21 C 1.54227 * 110.60946 * 179.41238 * 19 18 16 22 22 C 1.51309 * 103.55853 * 118.51460 * 21 19 18 23 23 O 1.21226 * 125.39999 * 179.97438 * 22 21 19 24 24 N 1.33881 * 109.20784 * 0.02562 * 22 21 19 25 25 C 1.33882 * 114.47260 * 359.97438 * 24 22 21 26 26 O 1.21222 * 125.39552 * 180.02562 * 25 24 22 27 27 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 28 28 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 30 30 H 1.08993 * 109.47322 * 295.00205 * 4 2 1 31 31 H 1.09002 * 109.47196 * 55.00329 * 4 2 1 32 32 H 1.08993 * 109.47331 * 300.00296 * 5 4 2 33 33 H 1.09001 * 109.46791 * 60.00740 * 5 4 2 34 34 H 0.96992 * 120.00104 * 0.02562 * 6 5 4 35 35 H 0.97004 * 119.99275 * 180.02562 * 10 9 7 36 36 H 0.96995 * 120.00293 * 94.99410 * 15 2 1 37 37 H 1.09000 * 109.47712 * 299.99892 * 18 16 15 38 38 H 1.08995 * 109.47183 * 60.00106 * 18 16 15 39 39 H 1.09002 * 110.60682 * 237.03379 * 21 19 18 40 40 H 1.09001 * 110.60462 * 359.97438 * 21 19 18 41 41 H 0.97001 * 122.76766 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 7 4.0532 -1.3045 -2.5095 7 6 5.3953 -1.3414 -2.7788 8 1 6.0938 -0.8606 -2.1099 9 6 5.8581 -1.9959 -3.9122 10 7 5.0069 -2.5813 -4.7275 11 14 7.6888 -2.0455 -4.2799 12 1 8.4002 -2.7167 -3.1625 13 1 7.9207 -2.7999 -5.5378 14 1 8.2010 -0.6600 -4.4316 15 7 2.0184 -0.6906 1.1962 16 6 2.1470 -0.0182 2.3571 17 8 1.8590 1.1587 2.4115 18 6 2.6488 -0.7288 3.5877 19 6 2.7009 0.2545 4.7588 20 1 1.7226 0.7065 4.9225 21 6 3.1979 -0.4501 6.0376 22 6 4.4713 0.2922 6.3795 23 8 5.1890 0.0557 7.3273 24 7 4.6792 1.2523 5.4699 25 6 3.7456 1.3212 4.5128 26 8 3.7384 2.1125 3.5945 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.7517 -1.7715 -1.2055 31 1 1.6055 -0.2618 -2.1370 32 1 3.8532 0.4369 -1.3573 33 1 3.9995 -1.0729 -0.4259 34 1 3.4259 -1.7360 -3.1104 35 1 5.3303 -3.0390 -5.5193 36 1 2.2490 -1.6317 1.1527 37 1 1.9759 -1.5506 3.8326 38 1 3.6479 -1.1213 3.3987 39 1 2.4673 -0.3485 6.8401 40 1 3.4075 -1.5012 5.8395 41 1 5.4433 1.8490 5.5017 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699160808.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:43:25 Heat of formation + Delta-G solvation = -132.105917 kcal Electronic energy + Delta-G solvation = -23861.253197 eV Core-core repulsion = 20161.060820 eV Total energy + Delta-G solvation = -3700.192377 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.152 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.81264 -40.68557 -39.56268 -37.82834 -36.92933 -36.06292 -34.49624 -33.56031 -32.13531 -29.58872 -29.22797 -26.21771 -25.79724 -23.44022 -22.76249 -22.42595 -21.58839 -20.97594 -19.23438 -18.92265 -18.07431 -17.62482 -17.34131 -16.89510 -16.65840 -16.36502 -15.71917 -15.51308 -15.33269 -15.16008 -15.10447 -14.83657 -14.65223 -14.25842 -13.85945 -13.76297 -13.41450 -13.07063 -12.95778 -12.87478 -12.75227 -12.36223 -12.30344 -12.16176 -12.00945 -11.89952 -11.67474 -11.62089 -11.36489 -10.99333 -10.95807 -10.62561 -9.91208 -9.02666 -7.97828 -5.26896 0.52330 1.45796 1.48599 1.54998 1.76628 1.83050 1.87398 2.32996 2.53988 3.19689 3.26178 3.35509 3.47001 3.66779 3.75588 4.06515 4.10892 4.20486 4.36072 4.43800 4.58830 4.60156 4.67917 4.73380 4.77655 4.85848 4.91869 4.96461 5.05424 5.06881 5.25569 5.29012 5.37720 5.46043 5.67981 5.70403 6.24933 6.34927 6.72952 6.90084 7.31405 7.47035 8.06520 8.31161 9.25249 Molecular weight = 297.15amu Principal moments of inertia in cm(-1) A = 0.014476 B = 0.003311 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.819112 B = 8453.474931 C = 9819.498630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.153 3.847 3 H 0.057 0.943 4 C -0.118 4.118 5 C 0.155 3.845 6 N -0.745 5.745 7 C -0.252 4.252 8 H 0.069 0.931 9 C -0.071 4.071 10 N -0.966 5.966 11 Si 0.972 3.028 12 H -0.276 1.276 13 H -0.291 1.291 14 H -0.282 1.282 15 N -0.718 5.718 16 C 0.494 3.506 17 O -0.560 6.560 18 C -0.124 4.124 19 C -0.100 4.100 20 H 0.140 0.860 21 C -0.135 4.135 22 C 0.531 3.469 23 O -0.527 6.527 24 N -0.685 5.685 25 C 0.517 3.483 26 O -0.497 6.497 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.052 0.948 30 H 0.082 0.918 31 H 0.074 0.926 32 H -0.002 1.002 33 H 0.025 0.975 34 H 0.376 0.624 35 H 0.253 0.747 36 H 0.412 0.588 37 H 0.161 0.839 38 H 0.110 0.890 39 H 0.156 0.844 40 H 0.156 0.844 41 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.546 0.336 23.614 25.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.047 3.953 3 H 0.075 0.925 4 C -0.156 4.156 5 C 0.029 3.971 6 N -0.388 5.388 7 C -0.384 4.384 8 H 0.087 0.913 9 C -0.263 4.263 10 N -0.617 5.617 11 Si 0.801 3.199 12 H -0.202 1.202 13 H -0.217 1.217 14 H -0.208 1.208 15 N -0.371 5.371 16 C 0.281 3.719 17 O -0.438 6.438 18 C -0.164 4.164 19 C -0.122 4.122 20 H 0.158 0.842 21 C -0.174 4.174 22 C 0.321 3.679 23 O -0.402 6.402 24 N -0.350 5.350 25 C 0.305 3.695 26 O -0.368 6.368 27 H 0.086 0.914 28 H 0.092 0.908 29 H 0.071 0.929 30 H 0.101 0.899 31 H 0.093 0.907 32 H 0.016 0.984 33 H 0.043 0.957 34 H 0.208 0.792 35 H 0.062 0.938 36 H 0.248 0.752 37 H 0.179 0.821 38 H 0.128 0.872 39 H 0.173 0.827 40 H 0.173 0.827 41 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -10.356 1.418 23.664 25.870 hybrid contribution 1.628 0.232 -1.005 1.927 sum -8.729 1.649 22.659 24.338 Atomic orbital electron populations 1.22043 0.93509 1.02986 1.02201 1.20699 0.94860 0.95968 0.83739 0.92472 1.21889 0.94269 1.01892 0.97550 1.20740 0.93776 0.93722 0.88868 1.42549 1.04436 1.65240 1.26580 1.19554 0.85325 1.27937 1.05573 0.91317 1.25541 1.02023 1.01090 0.97672 1.69793 1.34666 1.41675 1.15528 0.85239 0.80085 0.77517 0.77088 1.20164 1.21709 1.20816 1.46043 1.67330 1.14587 1.09167 1.21252 0.77689 0.87257 0.85733 1.90797 1.50379 1.17080 1.85538 1.21756 1.06056 0.99152 0.89417 1.21875 1.00251 0.94123 0.95933 0.84224 1.22702 0.93949 1.02749 0.97966 1.21418 0.87879 0.79025 0.79567 1.90813 1.52523 1.67561 1.29268 1.45011 1.27416 1.34923 1.27641 1.21429 0.83246 0.85060 0.79778 1.90906 1.75195 1.39680 1.30994 0.91358 0.90783 0.92872 0.89916 0.90718 0.98379 0.95694 0.79182 0.93806 0.75194 0.82096 0.87180 0.82666 0.82665 0.74854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.09 9.48 71.98 0.68 -2.41 16 2 C 0.15 3.92 2.57 44.99 0.12 4.04 16 3 H 0.06 1.84 7.58 -2.39 -0.02 1.83 16 4 C -0.12 -3.48 4.87 30.59 0.15 -3.34 16 5 C 0.16 6.23 6.15 86.38 0.53 6.76 16 6 N -0.75 -38.04 5.60 -343.44 -1.92 -39.96 16 7 C -0.25 -14.33 9.99 84.04 0.84 -13.49 16 8 H 0.07 3.82 7.83 -2.91 -0.02 3.79 16 9 C -0.07 -4.07 5.50 84.86 0.47 -3.61 16 10 N -0.97 -58.77 13.06 21.65 0.28 -58.49 16 11 Si 0.97 46.26 29.55 68.60 2.03 48.29 16 12 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 13 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 14 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 15 N -0.72 -14.98 4.53 -442.52 -2.00 -16.98 16 16 C 0.49 10.59 7.47 87.66 0.65 11.24 16 17 O -0.56 -17.33 13.23 18.94 0.25 -17.08 16 18 C -0.12 -1.19 5.04 29.85 0.15 -1.04 16 19 C -0.10 -1.02 2.72 -10.93 -0.03 -1.05 16 20 H 0.14 1.29 8.03 -2.39 -0.02 1.28 16 21 C -0.13 -0.54 6.67 30.46 0.20 -0.33 16 22 C 0.53 7.28 8.55 87.99 0.75 8.03 16 23 O -0.53 -11.22 18.02 -2.86 -0.05 -11.27 16 24 N -0.69 -10.87 5.48 -427.79 -2.34 -13.22 16 25 C 0.52 10.34 7.71 87.99 0.68 11.02 16 26 O -0.50 -15.76 15.42 19.15 0.30 -15.47 16 27 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 33 H 0.03 0.97 7.75 -2.39 -0.02 0.95 16 34 H 0.38 20.01 7.67 -92.71 -0.71 19.30 16 35 H 0.25 14.89 8.31 -92.70 -0.77 14.12 16 36 H 0.41 6.61 8.60 -92.71 -0.80 5.81 16 37 H 0.16 0.06 8.14 -2.39 -0.02 0.04 16 38 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.16 -0.20 8.14 -2.39 -0.02 -0.22 16 40 H 0.16 -0.20 7.74 -2.39 -0.02 -0.22 16 41 H 0.41 6.30 8.96 -92.71 -0.83 5.47 16 Total: -1.00 -84.99 348.68 0.47 -84.53 By element: Atomic # 1 Polarization: 25.09 SS G_CDS: -1.26 Total: 23.83 kcal Atomic # 6 Polarization: 10.63 SS G_CDS: 5.19 Total: 15.82 kcal Atomic # 7 Polarization: -122.66 SS G_CDS: -5.99 Total: -128.65 kcal Atomic # 8 Polarization: -44.32 SS G_CDS: 0.49 Total: -43.82 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Total: -84.99 0.47 -84.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699160808.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.578 kcal (2) G-P(sol) polarization free energy of solvation -84.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds