Wall clock time and date at job start Fri Apr 10 2020 17:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47105 * 2 1 4 4 C 1.52999 * 109.47119 * 119.99452 * 2 1 3 5 5 N 1.46498 * 109.47549 * 174.99682 * 4 2 1 6 6 C 1.46508 * 119.99739 * 89.99899 * 5 4 2 7 7 C 1.36934 * 120.00281 * 270.00467 * 5 4 2 8 8 H 1.07996 * 120.00103 * 22.01203 * 7 5 4 9 9 C 1.38816 * 120.00318 * 202.00735 * 7 5 4 10 10 N 1.31625 * 119.99337 * 14.21422 * 9 7 5 11 11 Si 1.86792 * 120.00276 * 194.21516 * 9 7 5 12 12 H 1.48500 * 109.47213 * 89.99810 * 11 9 7 13 13 H 1.48502 * 109.47194 * 209.99984 * 11 9 7 14 14 H 1.48507 * 109.47011 * 329.99816 * 11 9 7 15 15 N 1.46497 * 109.46995 * 239.99556 * 2 1 3 16 16 C 1.34777 * 119.99913 * 85.00203 * 15 2 1 17 17 O 1.21277 * 120.00080 * 359.97438 * 16 15 2 18 18 C 1.50697 * 119.99815 * 179.97438 * 16 15 2 19 19 C 1.53002 * 109.47153 * 179.97438 * 18 16 15 20 20 H 1.09002 * 110.53612 * 56.39620 * 19 18 16 21 21 C 1.54230 * 110.60679 * 179.40911 * 19 18 16 22 22 C 1.51307 * 103.55350 * 118.51827 * 21 19 18 23 23 O 1.21232 * 125.39805 * 179.97438 * 22 21 19 24 24 N 1.33877 * 109.21178 * 359.97438 * 22 21 19 25 25 C 1.33884 * 114.46941 * 0.02562 * 24 22 21 26 26 O 1.21225 * 125.39095 * 180.02562 * 25 24 22 27 27 H 1.08992 * 109.47173 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47030 * 60.00363 * 1 2 3 29 29 H 1.09006 * 109.46621 * 300.00555 * 1 2 3 30 30 H 1.09002 * 109.47352 * 295.00176 * 4 2 1 31 31 H 1.09002 * 109.47288 * 54.99923 * 4 2 1 32 32 H 1.09003 * 109.46759 * 95.14998 * 6 5 4 33 33 H 1.09004 * 109.47062 * 215.14623 * 6 5 4 34 34 H 1.09002 * 109.47022 * 335.14556 * 6 5 4 35 35 H 0.96999 * 119.98992 * 179.97438 * 10 9 7 36 36 H 0.97005 * 120.00012 * 264.99915 * 15 2 1 37 37 H 1.09006 * 109.47247 * 299.99623 * 18 16 15 38 38 H 1.08998 * 109.47516 * 59.99809 * 18 16 15 39 39 H 1.09000 * 110.60682 * 237.03865 * 21 19 18 40 40 H 1.08996 * 110.60633 * 0.02562 * 21 19 18 41 41 H 0.96995 * 122.76789 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 3.5000 -0.8264 1.1907 6 6 4.3344 0.2342 1.7613 7 6 4.0849 -1.9159 0.6025 8 1 3.5312 -2.5056 -0.1130 9 6 5.3897 -2.2624 0.9258 10 7 5.9683 -1.7333 1.9830 11 14 6.3242 -3.4794 -0.1394 12 1 7.0472 -2.7470 -1.2099 13 1 7.2998 -4.2227 0.6977 14 1 5.3683 -4.4361 -0.7530 15 7 2.0183 -0.6907 -1.1961 16 6 2.1470 -0.0184 -2.3571 17 8 1.8582 1.1582 -2.4117 18 6 2.6499 -0.7288 -3.5873 19 6 2.7007 0.2541 -4.7588 20 1 3.3184 1.1164 -4.5080 21 6 3.2266 -0.4433 -6.0300 22 6 2.0733 -0.3250 -7.0023 23 8 2.0665 -0.7479 -8.1384 24 7 1.0616 0.3207 -6.4092 25 6 1.3054 0.6926 -5.1464 26 8 0.5306 1.2860 -4.4272 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 0.5140 0.8900 30 1 1.7516 -0.1581 2.1370 31 1 1.6054 -1.7197 1.2953 32 1 4.6182 -0.0348 2.7788 33 1 5.2314 0.3570 1.1543 34 1 3.7742 1.1692 1.7753 35 1 6.8799 -1.9757 2.2091 36 1 2.2490 -1.6319 -1.1525 37 1 3.6493 -1.1206 -3.3977 38 1 1.9777 -1.5511 -3.8324 39 1 4.1068 0.0724 -6.4141 40 1 3.4517 -1.4904 -5.8279 41 1 0.2215 0.5047 -6.8577 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699475730.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:43:53 Heat of formation + Delta-G solvation = -82.211836 kcal Electronic energy + Delta-G solvation = -24884.315389 eV Core-core repulsion = 21186.286582 eV Total energy + Delta-G solvation = -3698.028807 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.152 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.96890 -39.34198 -38.53451 -36.42726 -35.95585 -34.07560 -33.56376 -31.44646 -30.28626 -28.49152 -26.20429 -25.64041 -25.21823 -22.23936 -21.85322 -21.15421 -20.06886 -19.71350 -18.06027 -17.23188 -16.80307 -16.31087 -16.19763 -15.51698 -15.41364 -15.03621 -14.59955 -14.21419 -13.96824 -13.79586 -13.70026 -13.23223 -13.04329 -12.82102 -12.62233 -12.39930 -12.01123 -11.75730 -11.61782 -11.45504 -11.06211 -10.90472 -10.87452 -10.80647 -10.44854 -10.41533 -10.32492 -10.04093 -10.02966 -9.92472 -9.25383 -8.61321 -8.36165 -6.79616 -5.78620 -3.24699 1.36258 2.57771 2.61158 3.17542 3.29329 3.33657 3.38695 3.60381 3.91506 4.08785 4.24766 4.41140 4.53320 4.99697 5.15206 5.21975 5.30586 5.40618 5.45180 5.59649 5.64539 5.67637 5.80947 5.86209 5.96987 6.16480 6.22770 6.46482 6.47989 6.51753 6.75263 6.84031 7.13454 7.18310 7.34924 7.63140 7.73314 7.74672 8.15169 8.31600 8.82039 9.15999 9.80261 10.30940 11.25716 Molecular weight = 297.15amu Principal moments of inertia in cm(-1) A = 0.015464 B = 0.004719 C = 0.003828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.242469 B = 5931.735024 C = 7313.664692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.121 3.879 3 H 0.076 0.924 4 C 0.141 3.859 5 N -0.599 5.599 6 C 0.164 3.836 7 C -0.252 4.252 8 H 0.065 0.935 9 C 0.003 3.997 10 N -0.903 5.903 11 Si 0.899 3.101 12 H -0.288 1.288 13 H -0.291 1.291 14 H -0.279 1.279 15 N -0.698 5.698 16 C 0.504 3.496 17 O -0.531 6.531 18 C -0.131 4.131 19 C -0.106 4.106 20 H 0.132 0.868 21 C -0.157 4.157 22 C 0.532 3.468 23 O -0.494 6.494 24 N -0.686 5.686 25 C 0.523 3.477 26 O -0.439 6.439 27 H 0.050 0.950 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.030 0.970 33 H 0.039 0.961 34 H -0.003 1.003 35 H 0.253 0.747 36 H 0.401 0.599 37 H 0.115 0.885 38 H 0.093 0.907 39 H 0.124 0.876 40 H 0.125 0.875 41 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.086 1.495 -12.249 14.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.013 3.987 3 H 0.094 0.906 4 C 0.013 3.987 5 N -0.321 5.321 6 C 0.019 3.981 7 C -0.381 4.381 8 H 0.083 0.917 9 C -0.196 4.196 10 N -0.548 5.548 11 Si 0.730 3.270 12 H -0.215 1.215 13 H -0.218 1.218 14 H -0.205 1.205 15 N -0.349 5.349 16 C 0.288 3.712 17 O -0.408 6.408 18 C -0.171 4.171 19 C -0.128 4.128 20 H 0.150 0.850 21 C -0.197 4.197 22 C 0.320 3.680 23 O -0.366 6.366 24 N -0.352 5.352 25 C 0.309 3.691 26 O -0.305 6.305 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.048 0.952 33 H 0.058 0.942 34 H 0.016 0.984 35 H 0.063 0.937 36 H 0.237 0.763 37 H 0.133 0.867 38 H 0.111 0.889 39 H 0.142 0.858 40 H 0.143 0.857 41 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -7.378 2.389 -12.262 14.509 hybrid contribution 0.390 -1.058 -0.734 1.346 sum -6.988 1.331 -12.996 14.816 Atomic orbital electron populations 1.22120 0.96673 1.01259 1.01701 1.21807 0.92104 0.98212 0.86592 0.90553 1.21062 0.86046 0.98213 0.93381 1.43827 0.98890 1.21065 1.68332 1.20772 0.92822 0.86291 0.98226 1.19006 0.96749 1.05065 1.17303 0.91718 1.24996 0.98857 0.98935 0.96807 1.70077 1.13682 1.46266 1.24727 0.86345 0.80044 0.80747 0.79913 1.21510 1.21786 1.20470 1.45887 1.65887 1.14257 1.08855 1.20204 0.78600 0.87689 0.84687 1.90748 1.49693 1.15502 1.84826 1.21625 1.05134 0.98071 0.92313 1.21810 0.94823 1.01267 0.94924 0.84970 1.22626 0.98228 1.05486 0.93334 1.20804 0.84849 0.75125 0.87234 1.90806 1.81598 1.46517 1.17695 1.44908 1.19373 1.54339 1.16627 1.20753 0.90194 0.77909 0.80248 1.90899 1.51580 1.34721 1.53324 0.93094 0.92719 0.92277 0.93126 0.93093 0.95169 0.94186 0.98392 0.93716 0.76288 0.86677 0.88909 0.85787 0.85738 0.74929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.35 9.48 37.16 0.35 -2.00 16 2 C 0.12 2.09 2.88 -67.93 -0.20 1.89 16 3 H 0.08 1.51 7.58 -51.93 -0.39 1.12 16 4 C 0.14 2.67 5.30 -4.04 -0.02 2.65 16 5 N -0.60 -13.88 2.82 -181.11 -0.51 -14.39 16 6 C 0.16 3.91 8.98 59.85 0.54 4.45 16 7 C -0.25 -6.16 8.85 -15.06 -0.13 -6.29 16 8 H 0.07 1.47 6.22 -52.49 -0.33 1.14 16 9 C 0.00 0.08 5.08 -17.43 -0.09 -0.01 16 10 N -0.90 -25.15 10.72 55.49 0.59 -24.55 16 11 Si 0.90 20.08 29.58 -169.99 -5.03 15.05 16 12 H -0.29 -6.41 7.11 56.52 0.40 -6.00 16 13 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 14 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 15 N -0.70 -11.54 4.49 -53.81 -0.24 -11.78 16 16 C 0.50 8.11 7.47 -10.99 -0.08 8.03 16 17 O -0.53 -10.30 13.23 -17.45 -0.23 -10.54 16 18 C -0.13 -1.45 5.04 -27.88 -0.14 -1.59 16 19 C -0.11 -1.06 2.72 -90.83 -0.25 -1.30 16 20 H 0.13 1.36 8.03 -51.93 -0.42 0.94 16 21 C -0.16 -1.11 6.67 -26.94 -0.18 -1.29 16 22 C 0.53 5.05 8.55 -11.09 -0.09 4.96 16 23 O -0.49 -6.23 18.02 5.60 0.10 -6.13 16 24 N -0.69 -6.43 5.48 -11.40 -0.06 -6.49 16 25 C 0.52 6.26 7.71 -11.09 -0.09 6.18 16 26 O -0.44 -7.20 15.42 -17.40 -0.27 -7.47 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.05 0.91 8.07 -51.93 -0.42 0.49 16 31 H 0.05 0.94 8.04 -51.93 -0.42 0.52 16 32 H 0.03 0.78 7.36 -51.93 -0.38 0.40 16 33 H 0.04 1.03 7.31 -51.93 -0.38 0.65 16 34 H 0.00 -0.05 8.03 -51.93 -0.42 -0.47 16 35 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 36 H 0.40 6.40 6.51 -40.82 -0.27 6.13 16 37 H 0.12 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.12 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.12 0.69 7.74 -51.93 -0.40 0.29 16 41 H 0.41 3.26 8.96 -40.82 -0.37 2.90 16 LS Contribution 340.80 15.07 5.14 5.14 Total: -1.00 -33.54 340.80 -6.74 -40.28 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -5.86 Total: 5.22 kcal Atomic # 6 Polarization: 16.03 SS G_CDS: -0.38 Total: 15.66 kcal Atomic # 7 Polarization: -57.00 SS G_CDS: -0.22 Total: -57.22 kcal Atomic # 8 Polarization: -23.73 SS G_CDS: -0.40 Total: -24.13 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.03 Total: 15.05 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.54 -6.74 -40.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699475730.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.932 kcal (2) G-P(sol) polarization free energy of solvation -33.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds