Wall clock time and date at job start Fri Apr 10 2020 17:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47105 * 2 1 4 4 C 1.52999 * 109.47119 * 119.99452 * 2 1 3 5 5 N 1.46498 * 109.47549 * 174.99682 * 4 2 1 6 6 C 1.46508 * 119.99739 * 89.99899 * 5 4 2 7 7 C 1.36934 * 120.00281 * 270.00467 * 5 4 2 8 8 H 1.07996 * 120.00103 * 22.01203 * 7 5 4 9 9 C 1.38816 * 120.00318 * 202.00735 * 7 5 4 10 10 N 1.31625 * 119.99337 * 14.21422 * 9 7 5 11 11 Si 1.86792 * 120.00276 * 194.21516 * 9 7 5 12 12 H 1.48500 * 109.47213 * 89.99810 * 11 9 7 13 13 H 1.48502 * 109.47194 * 209.99984 * 11 9 7 14 14 H 1.48507 * 109.47011 * 329.99816 * 11 9 7 15 15 N 1.46497 * 109.46995 * 239.99556 * 2 1 3 16 16 C 1.34777 * 119.99913 * 85.00203 * 15 2 1 17 17 O 1.21277 * 120.00080 * 359.97438 * 16 15 2 18 18 C 1.50697 * 119.99815 * 179.97438 * 16 15 2 19 19 C 1.53002 * 109.47153 * 179.97438 * 18 16 15 20 20 H 1.09002 * 110.53612 * 56.39620 * 19 18 16 21 21 C 1.54230 * 110.60679 * 179.40911 * 19 18 16 22 22 C 1.51307 * 103.55350 * 118.51827 * 21 19 18 23 23 O 1.21232 * 125.39805 * 179.97438 * 22 21 19 24 24 N 1.33877 * 109.21178 * 359.97438 * 22 21 19 25 25 C 1.33884 * 114.46941 * 0.02562 * 24 22 21 26 26 O 1.21225 * 125.39095 * 180.02562 * 25 24 22 27 27 H 1.08992 * 109.47173 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47030 * 60.00363 * 1 2 3 29 29 H 1.09006 * 109.46621 * 300.00555 * 1 2 3 30 30 H 1.09002 * 109.47352 * 295.00176 * 4 2 1 31 31 H 1.09002 * 109.47288 * 54.99923 * 4 2 1 32 32 H 1.09003 * 109.46759 * 95.14998 * 6 5 4 33 33 H 1.09004 * 109.47062 * 215.14623 * 6 5 4 34 34 H 1.09002 * 109.47022 * 335.14556 * 6 5 4 35 35 H 0.96999 * 119.98992 * 179.97438 * 10 9 7 36 36 H 0.97005 * 120.00012 * 264.99915 * 15 2 1 37 37 H 1.09006 * 109.47247 * 299.99623 * 18 16 15 38 38 H 1.08998 * 109.47516 * 59.99809 * 18 16 15 39 39 H 1.09000 * 110.60682 * 237.03865 * 21 19 18 40 40 H 1.08996 * 110.60633 * 0.02562 * 21 19 18 41 41 H 0.96995 * 122.76789 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 3.5000 -0.8264 1.1907 6 6 4.3344 0.2342 1.7613 7 6 4.0849 -1.9159 0.6025 8 1 3.5312 -2.5056 -0.1130 9 6 5.3897 -2.2624 0.9258 10 7 5.9683 -1.7333 1.9830 11 14 6.3242 -3.4794 -0.1394 12 1 7.0472 -2.7470 -1.2099 13 1 7.2998 -4.2227 0.6977 14 1 5.3683 -4.4361 -0.7530 15 7 2.0183 -0.6907 -1.1961 16 6 2.1470 -0.0184 -2.3571 17 8 1.8582 1.1582 -2.4117 18 6 2.6499 -0.7288 -3.5873 19 6 2.7007 0.2541 -4.7588 20 1 3.3184 1.1164 -4.5080 21 6 3.2266 -0.4433 -6.0300 22 6 2.0733 -0.3250 -7.0023 23 8 2.0665 -0.7479 -8.1384 24 7 1.0616 0.3207 -6.4092 25 6 1.3054 0.6926 -5.1464 26 8 0.5306 1.2860 -4.4272 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 0.5140 0.8900 30 1 1.7516 -0.1581 2.1370 31 1 1.6054 -1.7197 1.2953 32 1 4.6182 -0.0348 2.7788 33 1 5.2314 0.3570 1.1543 34 1 3.7742 1.1692 1.7753 35 1 6.8799 -1.9757 2.2091 36 1 2.2490 -1.6319 -1.1525 37 1 3.6493 -1.1206 -3.3977 38 1 1.9777 -1.5511 -3.8324 39 1 4.1068 0.0724 -6.4141 40 1 3.4517 -1.4904 -5.8279 41 1 0.2215 0.5047 -6.8577 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699475730.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:43:52 Heat of formation + Delta-G solvation = -106.449264 kcal Electronic energy + Delta-G solvation = -24885.366403 eV Core-core repulsion = 21186.286582 eV Total energy + Delta-G solvation = -3699.079821 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.81591 -40.56014 -39.54414 -37.98723 -36.91830 -35.64955 -34.47173 -33.09745 -31.74454 -29.36196 -28.01915 -27.34048 -26.13233 -23.67923 -22.75910 -22.35933 -21.34126 -20.92348 -18.97547 -18.69156 -17.94675 -17.53371 -17.19598 -16.88118 -16.73952 -16.36778 -15.61022 -15.48473 -15.17838 -15.00576 -14.97846 -14.58669 -14.52538 -13.84522 -13.77975 -13.56176 -13.43756 -13.11738 -12.87121 -12.72855 -12.60376 -12.48743 -12.19365 -12.14159 -11.95936 -11.81680 -11.70282 -11.67532 -11.36044 -10.97796 -10.54165 -10.52037 -9.71871 -8.69569 -7.71991 -5.20051 0.51390 1.56075 1.56542 1.65226 1.75438 1.82555 1.96955 2.48836 2.60076 3.18822 3.27358 3.42383 3.45998 3.74477 3.76354 4.07651 4.21110 4.33661 4.48491 4.57087 4.58384 4.72522 4.78034 4.85494 4.88225 4.91987 4.94463 5.03138 5.08211 5.22218 5.32424 5.47152 5.65814 5.68523 5.74092 5.88263 6.32878 6.39371 6.88209 6.91413 7.21673 7.59307 7.93972 8.41981 9.32204 Molecular weight = 297.15amu Principal moments of inertia in cm(-1) A = 0.015464 B = 0.004719 C = 0.003828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.242469 B = 5931.735024 C = 7313.664692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.129 3.871 3 H 0.047 0.953 4 C 0.143 3.857 5 N -0.612 5.612 6 C 0.179 3.821 7 C -0.243 4.243 8 H 0.088 0.912 9 C -0.060 4.060 10 N -0.945 5.945 11 Si 0.963 3.037 12 H -0.286 1.286 13 H -0.310 1.310 14 H -0.254 1.254 15 N -0.701 5.701 16 C 0.493 3.507 17 O -0.569 6.569 18 C -0.125 4.125 19 C -0.103 4.103 20 H 0.128 0.872 21 C -0.140 4.140 22 C 0.537 3.463 23 O -0.523 6.523 24 N -0.678 5.678 25 C 0.526 3.474 26 O -0.490 6.490 27 H 0.067 0.933 28 H 0.038 0.962 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.004 0.996 33 H 0.012 0.988 34 H 0.018 0.982 35 H 0.243 0.757 36 H 0.405 0.595 37 H 0.136 0.864 38 H 0.119 0.881 39 H 0.150 0.850 40 H 0.152 0.848 41 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.408 -0.156 -13.986 15.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.021 3.979 3 H 0.065 0.935 4 C 0.016 3.984 5 N -0.335 5.335 6 C 0.034 3.966 7 C -0.373 4.373 8 H 0.106 0.894 9 C -0.254 4.254 10 N -0.593 5.593 11 Si 0.791 3.209 12 H -0.213 1.213 13 H -0.238 1.238 14 H -0.178 1.178 15 N -0.353 5.353 16 C 0.280 3.720 17 O -0.448 6.448 18 C -0.165 4.165 19 C -0.125 4.125 20 H 0.146 0.854 21 C -0.179 4.179 22 C 0.327 3.673 23 O -0.398 6.398 24 N -0.344 5.344 25 C 0.313 3.687 26 O -0.360 6.360 27 H 0.086 0.914 28 H 0.057 0.943 29 H 0.092 0.908 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.023 0.977 33 H 0.031 0.969 34 H 0.037 0.963 35 H 0.052 0.948 36 H 0.242 0.758 37 H 0.154 0.846 38 H 0.137 0.863 39 H 0.168 0.832 40 H 0.170 0.830 41 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -7.742 0.714 -14.044 16.053 hybrid contribution 0.393 -0.484 -0.183 0.650 sum -7.349 0.229 -14.228 16.015 Atomic orbital electron populations 1.21990 0.94546 1.02307 1.01643 1.21520 0.93602 0.96338 0.86433 0.93500 1.21197 0.83549 0.99140 0.94484 1.44064 1.00635 1.20596 1.68206 1.20465 0.92348 0.87567 0.96222 1.19517 0.96673 1.04492 1.16602 0.89440 1.25809 1.00198 1.01326 0.98100 1.70271 1.13419 1.48611 1.26952 0.85321 0.78646 0.78893 0.77991 1.21284 1.23818 1.17802 1.45927 1.66061 1.14389 1.08886 1.21094 0.77688 0.87477 0.85747 1.90739 1.51158 1.17396 1.85495 1.21697 1.06529 0.98367 0.89933 1.21814 0.93441 1.01305 0.95946 0.85388 1.22690 0.97641 1.07065 0.90497 1.21171 0.85133 0.73997 0.86974 1.90808 1.82080 1.47796 1.19107 1.44858 1.19870 1.53703 1.15943 1.21103 0.90547 0.76730 0.80303 1.90882 1.53214 1.37139 1.54788 0.91405 0.94312 0.90806 0.92313 0.91980 0.97740 0.96933 0.96347 0.94802 0.75783 0.84586 0.86292 0.83215 0.83036 0.74417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.09 9.48 71.98 0.68 -3.41 16 2 C 0.13 4.32 2.88 44.99 0.13 4.45 16 3 H 0.05 1.86 7.58 -2.39 -0.02 1.84 16 4 C 0.14 5.17 5.30 86.38 0.46 5.63 16 5 N -0.61 -27.90 2.82 -726.91 -2.05 -29.95 16 6 C 0.18 8.70 8.98 127.77 1.15 9.85 16 7 C -0.24 -11.51 8.85 84.03 0.74 -10.76 16 8 H 0.09 3.68 6.22 -2.91 -0.02 3.66 16 9 C -0.06 -3.07 5.08 84.86 0.43 -2.64 16 10 N -0.95 -53.60 10.72 21.65 0.23 -53.37 16 11 Si 0.96 40.37 29.58 68.60 2.03 42.40 16 12 H -0.29 -11.77 7.11 99.48 0.71 -11.06 16 13 H -0.31 -13.90 7.11 99.48 0.71 -13.20 16 14 H -0.25 -9.50 7.11 99.48 0.71 -8.80 16 15 N -0.70 -21.91 4.49 -442.55 -1.99 -23.89 16 16 C 0.49 15.16 7.47 87.66 0.65 15.81 16 17 O -0.57 -22.05 13.23 18.98 0.25 -21.80 16 18 C -0.13 -2.38 5.04 29.85 0.15 -2.23 16 19 C -0.10 -1.78 2.72 -10.93 -0.03 -1.81 16 20 H 0.13 2.39 8.03 -2.39 -0.02 2.37 16 21 C -0.14 -1.41 6.67 30.46 0.20 -1.21 16 22 C 0.54 8.78 8.55 87.99 0.75 9.53 16 23 O -0.52 -12.05 18.02 -2.88 -0.05 -12.11 16 24 N -0.68 -11.63 5.48 -427.80 -2.34 -13.98 16 25 C 0.53 11.94 7.71 87.99 0.68 12.62 16 26 O -0.49 -16.16 15.42 19.14 0.30 -15.86 16 27 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 30 H 0.06 2.02 8.07 -2.39 -0.02 2.01 16 31 H 0.06 2.12 8.04 -2.39 -0.02 2.10 16 32 H 0.00 0.23 7.36 -2.39 -0.02 0.21 16 33 H 0.01 0.64 7.31 -2.39 -0.02 0.62 16 34 H 0.02 0.78 8.03 -2.39 -0.02 0.76 16 35 H 0.24 13.62 8.31 -92.71 -0.77 12.85 16 36 H 0.41 11.76 6.51 -92.70 -0.60 11.16 16 37 H 0.14 2.08 8.14 -2.38 -0.02 2.06 16 38 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.15 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.15 0.84 7.74 -2.39 -0.02 0.82 16 41 H 0.42 6.22 8.96 -92.71 -0.83 5.39 16 Total: -1.00 -74.78 340.80 2.01 -72.77 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: -0.37 Total: 19.96 kcal Atomic # 6 Polarization: 29.83 SS G_CDS: 6.00 Total: 35.83 kcal Atomic # 7 Polarization: -115.05 SS G_CDS: -6.14 Total: -121.19 kcal Atomic # 8 Polarization: -50.26 SS G_CDS: 0.49 Total: -49.76 kcal Atomic # 14 Polarization: 40.37 SS G_CDS: 2.03 Total: 42.40 kcal Total: -74.78 2.01 -72.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699475730.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.683 kcal (2) G-P(sol) polarization free energy of solvation -74.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds