Wall clock time and date at job start Fri Apr 10 2020 17:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.46903 * 2 1 4 4 C 1.52997 * 109.47525 * 240.00002 * 2 1 3 5 5 N 1.46497 * 109.47424 * 184.99494 * 4 2 1 6 6 C 1.46496 * 120.00198 * 270.00192 * 5 4 2 7 7 C 1.36938 * 119.99737 * 89.99752 * 5 4 2 8 8 H 1.07996 * 120.00042 * 337.99447 * 7 5 4 9 9 C 1.38814 * 119.99967 * 157.99391 * 7 5 4 10 10 N 1.31621 * 120.00040 * 330.24306 * 9 7 5 11 11 Si 1.86800 * 120.00074 * 150.24313 * 9 7 5 12 12 H 1.48505 * 109.47044 * 179.97438 * 11 9 7 13 13 H 1.48498 * 109.46750 * 299.99663 * 11 9 7 14 14 H 1.48500 * 109.47146 * 59.99921 * 11 9 7 15 15 N 1.46494 * 109.47370 * 119.99446 * 2 1 3 16 16 C 1.34775 * 120.00380 * 275.00549 * 15 2 1 17 17 O 1.21280 * 119.99896 * 359.97438 * 16 15 2 18 18 C 1.50702 * 119.99850 * 179.97438 * 16 15 2 19 19 C 1.53011 * 109.46763 * 179.97438 * 18 16 15 20 20 H 1.08989 * 110.53857 * 303.60498 * 19 18 16 21 21 C 1.54226 * 110.60393 * 180.58827 * 19 18 16 22 22 C 1.51315 * 103.55666 * 241.48274 * 21 19 18 23 23 O 1.21223 * 125.39573 * 180.02562 * 22 21 19 24 24 N 1.33880 * 109.20528 * 0.02562 * 22 21 19 25 25 C 1.33875 * 114.47450 * 359.97438 * 24 22 21 26 26 O 1.21224 * 125.39556 * 179.97438 * 25 24 22 27 27 H 1.08996 * 109.47142 * 300.00066 * 1 2 3 28 28 H 1.08996 * 109.47111 * 60.00345 * 1 2 3 29 29 H 1.08998 * 109.46533 * 179.97438 * 1 2 3 30 30 H 1.09009 * 109.47212 * 64.99591 * 4 2 1 31 31 H 1.08997 * 109.47227 * 304.99834 * 4 2 1 32 32 H 1.09001 * 109.47066 * 272.67213 * 6 5 4 33 33 H 1.09000 * 109.47494 * 32.67408 * 6 5 4 34 34 H 1.08998 * 109.47352 * 152.67761 * 6 5 4 35 35 H 0.97005 * 119.99750 * 354.28387 * 10 9 7 36 36 H 0.97005 * 120.00018 * 95.00251 * 15 2 1 37 37 H 1.09001 * 109.47048 * 299.99404 * 18 16 15 38 38 H 1.08996 * 109.47440 * 60.00536 * 18 16 15 39 39 H 1.09007 * 110.60758 * 0.02562 * 21 19 18 40 40 H 1.08997 * 110.61078 * 122.96658 * 21 19 18 41 41 H 0.97001 * 122.76009 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 3.5001 -0.8262 -1.1905 6 6 4.3343 0.2342 -1.7612 7 6 4.0851 -1.9156 -0.6022 8 1 3.5313 -2.5054 0.1133 9 6 5.3899 -2.2620 -0.9254 10 7 5.8664 -1.9885 -2.1215 11 14 6.4696 -3.1162 0.3371 12 1 7.8079 -3.3769 -0.2513 13 1 6.6146 -2.2477 1.5329 14 1 5.8443 -4.4036 0.7332 15 7 2.0184 -0.6905 1.1962 16 6 2.1470 -0.0181 2.3571 17 8 1.8589 1.1587 2.4115 18 6 2.6489 -0.7286 3.5877 19 6 2.7010 0.2548 4.7588 20 1 3.3198 1.1161 4.5076 21 6 3.2259 -0.4427 6.0303 22 6 2.0727 -0.3224 7.0025 23 8 2.0653 -0.7448 8.1388 24 7 1.0619 0.3245 6.4091 25 6 1.3063 0.6955 5.1461 26 8 0.5324 1.2896 4.4266 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 1.7517 -0.1583 -2.1370 31 1 1.6055 -1.7198 -1.2951 32 1 4.5031 0.0340 -2.8193 33 1 3.8295 1.1937 -1.6490 34 1 5.2911 0.2640 -1.2401 35 1 5.2827 -1.6210 -2.8036 36 1 2.2491 -1.6316 1.1527 37 1 1.9760 -1.5504 3.8326 38 1 3.6480 -1.1210 3.3987 39 1 3.4503 -1.4901 5.8284 40 1 4.1067 0.0719 6.4143 41 1 0.2220 0.5098 6.8575 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699475731.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:43:57 Heat of formation + Delta-G solvation = -84.823685 kcal Electronic energy + Delta-G solvation = -24928.099900 eV Core-core repulsion = 21229.957835 eV Total energy + Delta-G solvation = -3698.142065 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.152 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.97652 -39.36769 -38.55038 -36.57924 -35.97433 -34.30618 -33.58267 -31.46518 -30.22528 -28.50121 -26.50277 -25.39517 -25.20766 -22.22900 -21.84381 -21.13097 -20.11024 -19.74383 -18.07333 -17.51861 -17.01671 -16.47141 -16.25347 -15.55766 -15.43494 -14.71752 -14.50717 -14.19863 -13.99673 -13.95826 -13.69270 -13.58905 -13.17121 -12.81313 -12.68596 -12.50448 -12.16397 -11.84271 -11.54790 -11.42498 -11.31334 -10.83986 -10.80687 -10.76811 -10.57493 -10.45740 -10.41638 -10.10938 -10.04474 -9.58384 -9.27419 -8.44965 -8.35465 -6.99540 -6.13794 -3.25383 1.35584 2.56994 2.60434 3.15269 3.40009 3.43636 3.58344 3.62014 3.90904 4.07917 4.23770 4.51877 4.52982 4.98615 5.13794 5.14470 5.22847 5.39038 5.41400 5.54807 5.59653 5.66604 5.79643 5.80239 5.87765 6.07343 6.15741 6.36756 6.44797 6.45807 6.50261 6.71784 6.91908 7.07905 7.12202 7.15340 7.73825 7.80969 8.13404 8.47808 8.79938 9.04643 9.78063 10.19731 11.13380 Molecular weight = 297.15amu Principal moments of inertia in cm(-1) A = 0.015668 B = 0.004774 C = 0.003852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.681223 B = 5863.486523 C = 7267.282608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.123 3.877 3 H 0.075 0.925 4 C 0.142 3.858 5 N -0.601 5.601 6 C 0.136 3.864 7 C -0.355 4.355 8 H 0.056 0.944 9 C -0.020 4.020 10 N -0.909 5.909 11 Si 1.054 2.946 12 H -0.286 1.286 13 H -0.293 1.293 14 H -0.293 1.293 15 N -0.697 5.697 16 C 0.504 3.496 17 O -0.532 6.532 18 C -0.131 4.131 19 C -0.106 4.106 20 H 0.132 0.868 21 C -0.157 4.157 22 C 0.532 3.468 23 O -0.493 6.493 24 N -0.686 5.686 25 C 0.523 3.477 26 O -0.440 6.440 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.050 0.950 30 H 0.048 0.952 31 H 0.052 0.948 32 H 0.009 0.991 33 H 0.014 0.986 34 H 0.051 0.949 35 H 0.271 0.729 36 H 0.402 0.598 37 H 0.093 0.907 38 H 0.116 0.884 39 H 0.125 0.875 40 H 0.124 0.876 41 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.121 1.998 12.726 14.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.015 3.985 3 H 0.093 0.907 4 C 0.014 3.986 5 N -0.324 5.324 6 C -0.009 4.009 7 C -0.483 4.483 8 H 0.074 0.926 9 C -0.223 4.223 10 N -0.548 5.548 11 Si 0.883 3.117 12 H -0.212 1.212 13 H -0.221 1.221 14 H -0.220 1.220 15 N -0.348 5.348 16 C 0.288 3.712 17 O -0.409 6.409 18 C -0.171 4.171 19 C -0.128 4.128 20 H 0.150 0.850 21 C -0.197 4.197 22 C 0.320 3.680 23 O -0.366 6.366 24 N -0.352 5.352 25 C 0.309 3.691 26 O -0.306 6.306 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.027 0.973 33 H 0.032 0.968 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.239 0.761 37 H 0.111 0.889 38 H 0.134 0.866 39 H 0.143 0.857 40 H 0.142 0.858 41 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -6.038 2.331 13.102 14.613 hybrid contribution -1.832 0.148 -0.076 1.840 sum -7.870 2.479 13.025 15.419 Atomic orbital electron populations 1.22119 0.96601 1.01301 1.01737 1.21727 0.92144 0.98071 0.86548 0.90663 1.21050 0.85828 0.98300 0.93414 1.43861 0.99207 1.20403 1.68978 1.20942 0.95041 0.88548 0.96389 1.19746 1.00033 1.07761 1.20797 0.92595 1.25677 0.97278 1.00163 0.99213 1.70778 1.40857 1.41640 1.01530 0.83694 0.76888 0.75567 0.75504 1.21154 1.22065 1.21987 1.45886 1.65826 1.14343 1.08749 1.20224 0.78557 0.87687 0.84711 1.90746 1.49763 1.15509 1.84867 1.21624 1.05179 0.98065 0.92251 1.21811 0.94830 1.01238 0.94945 0.84994 1.22628 0.98231 1.05521 0.93291 1.20803 0.84833 0.75128 0.87239 1.90804 1.81549 1.46537 1.17677 1.44908 1.19432 1.54308 1.16601 1.20754 0.90178 0.77910 0.80254 1.90897 1.51629 1.34746 1.53325 0.92612 0.92315 0.93067 0.93395 0.92953 0.97267 0.96777 0.93036 0.91762 0.76145 0.88884 0.86617 0.85690 0.85765 0.74931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.37 9.48 37.16 0.35 -2.02 16 2 C 0.12 2.14 2.88 -67.94 -0.20 1.95 16 3 H 0.08 1.49 7.58 -51.93 -0.39 1.10 16 4 C 0.14 2.69 5.33 -4.04 -0.02 2.67 16 5 N -0.60 -13.81 2.71 -181.13 -0.49 -14.30 16 6 C 0.14 3.14 8.97 59.84 0.54 3.68 16 7 C -0.35 -8.76 8.67 -15.06 -0.13 -8.89 16 8 H 0.06 1.31 6.34 -52.49 -0.33 0.98 16 9 C -0.02 -0.52 4.61 -17.43 -0.08 -0.60 16 10 N -0.91 -25.94 12.68 55.49 0.70 -25.24 16 11 Si 1.05 23.11 30.01 -169.99 -5.10 18.01 16 12 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 13 H -0.29 -6.08 7.11 56.52 0.40 -5.68 16 14 H -0.29 -6.07 7.11 56.52 0.40 -5.67 16 15 N -0.70 -11.68 4.49 -53.81 -0.24 -11.92 16 16 C 0.50 8.19 7.47 -10.98 -0.08 8.10 16 17 O -0.53 -10.37 13.23 -17.46 -0.23 -10.60 16 18 C -0.13 -1.47 5.04 -27.88 -0.14 -1.61 16 19 C -0.11 -1.06 2.72 -90.82 -0.25 -1.31 16 20 H 0.13 1.36 8.03 -51.94 -0.42 0.95 16 21 C -0.16 -1.11 6.67 -26.94 -0.18 -1.29 16 22 C 0.53 5.04 8.55 -11.08 -0.09 4.95 16 23 O -0.49 -6.20 18.02 5.61 0.10 -6.10 16 24 N -0.69 -6.43 5.48 -11.39 -0.06 -6.49 16 25 C 0.52 6.28 7.71 -11.09 -0.09 6.19 16 26 O -0.44 -7.23 15.42 -17.41 -0.27 -7.50 16 27 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.05 0.86 8.07 -51.92 -0.42 0.44 16 31 H 0.05 0.99 8.04 -51.93 -0.42 0.57 16 32 H 0.01 0.22 6.85 -51.93 -0.36 -0.13 16 33 H 0.01 0.29 8.09 -51.93 -0.42 -0.13 16 34 H 0.05 1.29 7.19 -51.93 -0.37 0.92 16 35 H 0.27 7.83 6.31 -40.82 -0.26 7.58 16 36 H 0.40 6.58 6.51 -40.82 -0.27 6.31 16 37 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.12 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.13 0.69 7.74 -51.93 -0.40 0.29 16 40 H 0.12 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.41 3.27 8.96 -40.82 -0.37 2.90 16 LS Contribution 340.00 15.07 5.12 5.12 Total: -1.00 -33.84 340.00 -6.59 -40.42 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -5.75 Total: 6.78 kcal Atomic # 6 Polarization: 12.18 SS G_CDS: -0.37 Total: 11.81 kcal Atomic # 7 Polarization: -57.86 SS G_CDS: -0.09 Total: -57.95 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: -0.40 Total: -24.20 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -5.10 Total: 18.01 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.84 -6.59 -40.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699475731.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.401 kcal (2) G-P(sol) polarization free energy of solvation -33.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds