Wall clock time and date at job start Fri Apr 10 2020 17:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.46903 * 2 1 4 4 C 1.52997 * 109.47525 * 240.00002 * 2 1 3 5 5 N 1.46497 * 109.47424 * 184.99494 * 4 2 1 6 6 C 1.46496 * 120.00198 * 270.00192 * 5 4 2 7 7 C 1.36938 * 119.99737 * 89.99752 * 5 4 2 8 8 H 1.07996 * 120.00042 * 337.99447 * 7 5 4 9 9 C 1.38814 * 119.99967 * 157.99391 * 7 5 4 10 10 N 1.31621 * 120.00040 * 330.24306 * 9 7 5 11 11 Si 1.86800 * 120.00074 * 150.24313 * 9 7 5 12 12 H 1.48505 * 109.47044 * 179.97438 * 11 9 7 13 13 H 1.48498 * 109.46750 * 299.99663 * 11 9 7 14 14 H 1.48500 * 109.47146 * 59.99921 * 11 9 7 15 15 N 1.46494 * 109.47370 * 119.99446 * 2 1 3 16 16 C 1.34775 * 120.00380 * 275.00549 * 15 2 1 17 17 O 1.21280 * 119.99896 * 359.97438 * 16 15 2 18 18 C 1.50702 * 119.99850 * 179.97438 * 16 15 2 19 19 C 1.53011 * 109.46763 * 179.97438 * 18 16 15 20 20 H 1.08989 * 110.53857 * 303.60498 * 19 18 16 21 21 C 1.54226 * 110.60393 * 180.58827 * 19 18 16 22 22 C 1.51315 * 103.55666 * 241.48274 * 21 19 18 23 23 O 1.21223 * 125.39573 * 180.02562 * 22 21 19 24 24 N 1.33880 * 109.20528 * 0.02562 * 22 21 19 25 25 C 1.33875 * 114.47450 * 359.97438 * 24 22 21 26 26 O 1.21224 * 125.39556 * 179.97438 * 25 24 22 27 27 H 1.08996 * 109.47142 * 300.00066 * 1 2 3 28 28 H 1.08996 * 109.47111 * 60.00345 * 1 2 3 29 29 H 1.08998 * 109.46533 * 179.97438 * 1 2 3 30 30 H 1.09009 * 109.47212 * 64.99591 * 4 2 1 31 31 H 1.08997 * 109.47227 * 304.99834 * 4 2 1 32 32 H 1.09001 * 109.47066 * 272.67213 * 6 5 4 33 33 H 1.09000 * 109.47494 * 32.67408 * 6 5 4 34 34 H 1.08998 * 109.47352 * 152.67761 * 6 5 4 35 35 H 0.97005 * 119.99750 * 354.28387 * 10 9 7 36 36 H 0.97005 * 120.00018 * 95.00251 * 15 2 1 37 37 H 1.09001 * 109.47048 * 299.99404 * 18 16 15 38 38 H 1.08996 * 109.47440 * 60.00536 * 18 16 15 39 39 H 1.09007 * 110.60758 * 0.02562 * 21 19 18 40 40 H 1.08997 * 110.61078 * 122.96658 * 21 19 18 41 41 H 0.97001 * 122.76009 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 3.5001 -0.8262 -1.1905 6 6 4.3343 0.2342 -1.7612 7 6 4.0851 -1.9156 -0.6022 8 1 3.5313 -2.5054 0.1133 9 6 5.3899 -2.2620 -0.9254 10 7 5.8664 -1.9885 -2.1215 11 14 6.4696 -3.1162 0.3371 12 1 7.8079 -3.3769 -0.2513 13 1 6.6146 -2.2477 1.5329 14 1 5.8443 -4.4036 0.7332 15 7 2.0184 -0.6905 1.1962 16 6 2.1470 -0.0181 2.3571 17 8 1.8589 1.1587 2.4115 18 6 2.6489 -0.7286 3.5877 19 6 2.7010 0.2548 4.7588 20 1 3.3198 1.1161 4.5076 21 6 3.2259 -0.4427 6.0303 22 6 2.0727 -0.3224 7.0025 23 8 2.0653 -0.7448 8.1388 24 7 1.0619 0.3245 6.4091 25 6 1.3063 0.6955 5.1461 26 8 0.5324 1.2896 4.4266 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 1.7517 -0.1583 -2.1370 31 1 1.6055 -1.7198 -1.2951 32 1 4.5031 0.0340 -2.8193 33 1 3.8295 1.1937 -1.6490 34 1 5.2911 0.2640 -1.2401 35 1 5.2827 -1.6210 -2.8036 36 1 2.2491 -1.6316 1.1527 37 1 1.9760 -1.5504 3.8326 38 1 3.6480 -1.1210 3.3987 39 1 3.4503 -1.4901 5.8284 40 1 4.1067 0.0719 6.4143 41 1 0.2220 0.5098 6.8575 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699475731.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:43:56 Heat of formation + Delta-G solvation = -109.252514 kcal Electronic energy + Delta-G solvation = -24929.159214 eV Core-core repulsion = 21229.957835 eV Total energy + Delta-G solvation = -3699.201379 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.152 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.82205 -40.59895 -39.55802 -38.17778 -36.92914 -35.87599 -34.48295 -33.08922 -31.71465 -29.37305 -28.28057 -27.09253 -26.14163 -23.64744 -22.76058 -22.37457 -21.39839 -20.95254 -19.32248 -18.91864 -18.04408 -17.60285 -17.21984 -16.79787 -16.49414 -16.24862 -15.79567 -15.52967 -15.35928 -15.18531 -15.03982 -14.70520 -14.49413 -13.93667 -13.82822 -13.69944 -13.47283 -13.11506 -12.83147 -12.78801 -12.62474 -12.42168 -12.28975 -12.18626 -11.91842 -11.84391 -11.68268 -11.44237 -11.36631 -10.98552 -10.55896 -10.32497 -9.76166 -8.90385 -8.13262 -5.23321 0.50934 1.67269 1.74794 1.75248 1.82017 1.91334 1.93782 2.45453 2.76747 3.18402 3.26648 3.30190 3.45077 3.62644 3.74932 4.01990 4.15181 4.29454 4.40076 4.50145 4.56966 4.65949 4.67019 4.71689 4.83220 4.85361 4.85649 4.93100 5.05990 5.07861 5.14917 5.15371 5.36518 5.65394 5.80489 5.91299 6.32444 6.47343 6.84761 6.90623 7.10961 7.55548 7.87477 8.30057 9.12582 Molecular weight = 297.15amu Principal moments of inertia in cm(-1) A = 0.015668 B = 0.004774 C = 0.003852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.681223 B = 5863.486523 C = 7267.282608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.131 3.869 3 H 0.048 0.952 4 C 0.144 3.856 5 N -0.615 5.615 6 C 0.149 3.851 7 C -0.342 4.342 8 H 0.073 0.927 9 C -0.079 4.079 10 N -0.950 5.950 11 Si 1.102 2.898 12 H -0.309 1.309 13 H -0.271 1.271 14 H -0.269 1.269 15 N -0.701 5.701 16 C 0.493 3.507 17 O -0.569 6.569 18 C -0.125 4.125 19 C -0.103 4.103 20 H 0.129 0.871 21 C -0.140 4.140 22 C 0.537 3.463 23 O -0.523 6.523 24 N -0.678 5.678 25 C 0.525 3.475 26 O -0.491 6.491 27 H 0.039 0.961 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.058 0.942 32 H -0.005 1.005 33 H 0.033 0.967 34 H 0.024 0.976 35 H 0.254 0.746 36 H 0.405 0.595 37 H 0.119 0.881 38 H 0.137 0.863 39 H 0.153 0.847 40 H 0.151 0.849 41 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.201 0.646 14.672 16.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.023 3.977 3 H 0.066 0.934 4 C 0.017 3.983 5 N -0.338 5.338 6 C 0.003 3.997 7 C -0.471 4.471 8 H 0.091 0.909 9 C -0.276 4.276 10 N -0.592 5.592 11 Si 0.927 3.073 12 H -0.236 1.236 13 H -0.197 1.197 14 H -0.194 1.194 15 N -0.352 5.352 16 C 0.280 3.720 17 O -0.448 6.448 18 C -0.165 4.165 19 C -0.125 4.125 20 H 0.146 0.854 21 C -0.179 4.179 22 C 0.327 3.673 23 O -0.397 6.397 24 N -0.344 5.344 25 C 0.313 3.687 26 O -0.361 6.361 27 H 0.059 0.941 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.013 0.987 33 H 0.052 0.948 34 H 0.043 0.957 35 H 0.064 0.936 36 H 0.242 0.758 37 H 0.137 0.863 38 H 0.155 0.845 39 H 0.170 0.830 40 H 0.169 0.831 41 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -6.161 0.966 15.092 16.329 hybrid contribution -1.915 0.623 -0.698 2.131 sum -8.075 1.590 14.394 16.581 Atomic orbital electron populations 1.21989 0.94523 1.02251 1.01728 1.21453 0.93608 0.96267 0.86358 0.93419 1.21170 0.83524 0.98955 0.94613 1.44099 1.00857 1.19929 1.68947 1.20728 0.94183 0.89662 0.95136 1.20127 0.99939 1.07268 1.19790 0.90898 1.26998 0.99394 1.01301 0.99862 1.70915 1.40801 1.44948 1.02554 0.83066 0.74223 0.76072 0.73969 1.23598 1.19656 1.19434 1.45935 1.66038 1.14419 1.08842 1.21123 0.77644 0.87483 0.85746 1.90738 1.51188 1.17366 1.85515 1.21700 1.06564 0.98369 0.89879 1.21816 0.93444 1.01272 0.95955 0.85360 1.22695 0.97649 1.07120 0.90412 1.21176 0.85115 0.73997 0.86986 1.90807 1.82029 1.47802 1.19087 1.44860 1.19934 1.53678 1.15915 1.21110 0.90540 0.76731 0.80314 1.90880 1.53274 1.37184 1.54799 0.94139 0.90801 0.91556 0.92445 0.92382 0.98719 0.94808 0.95703 0.93614 0.75781 0.86314 0.84519 0.82957 0.83134 0.74430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.15 9.48 71.98 0.68 -3.47 16 2 C 0.13 4.43 2.88 44.99 0.13 4.56 16 3 H 0.05 1.89 7.58 -2.38 -0.02 1.87 16 4 C 0.14 5.26 5.33 86.38 0.46 5.72 16 5 N -0.61 -27.82 2.71 -726.96 -1.97 -29.78 16 6 C 0.15 6.93 8.97 127.77 1.15 8.08 16 7 C -0.34 -16.41 8.67 84.03 0.73 -15.68 16 8 H 0.07 3.21 6.34 -2.91 -0.02 3.19 16 9 C -0.08 -4.11 4.61 84.86 0.39 -3.71 16 10 N -0.95 -55.13 12.68 21.65 0.27 -54.85 16 11 Si 1.10 45.27 30.01 68.60 2.06 47.33 16 12 H -0.31 -13.80 7.11 99.48 0.71 -13.09 16 13 H -0.27 -10.02 7.11 99.48 0.71 -9.31 16 14 H -0.27 -9.92 7.11 99.48 0.71 -9.21 16 15 N -0.70 -22.26 4.49 -442.54 -1.99 -24.25 16 16 C 0.49 15.26 7.47 87.66 0.65 15.92 16 17 O -0.57 -22.07 13.23 18.97 0.25 -21.81 16 18 C -0.13 -2.39 5.04 29.85 0.15 -2.24 16 19 C -0.10 -1.77 2.72 -10.93 -0.03 -1.80 16 20 H 0.13 2.37 8.03 -2.39 -0.02 2.35 16 21 C -0.14 -1.38 6.67 30.46 0.20 -1.18 16 22 C 0.54 8.70 8.55 87.99 0.75 9.45 16 23 O -0.52 -11.95 18.02 -2.86 -0.05 -12.00 16 24 N -0.68 -11.60 5.48 -427.80 -2.34 -13.94 16 25 C 0.53 11.93 7.71 87.99 0.68 12.61 16 26 O -0.49 -16.21 15.42 19.15 0.30 -15.92 16 27 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.06 1.98 8.07 -2.38 -0.02 1.96 16 31 H 0.06 2.07 8.04 -2.39 -0.02 2.05 16 32 H -0.01 -0.26 6.85 -2.39 -0.02 -0.27 16 33 H 0.03 1.40 8.09 -2.39 -0.02 1.38 16 34 H 0.02 1.26 7.19 -2.39 -0.02 1.24 16 35 H 0.25 15.11 6.31 -92.70 -0.59 14.52 16 36 H 0.41 12.19 6.51 -92.70 -0.60 11.58 16 37 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.14 2.11 8.14 -2.39 -0.02 2.09 16 39 H 0.15 0.81 7.74 -2.38 -0.02 0.79 16 40 H 0.15 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.42 6.21 8.96 -92.71 -0.83 5.38 16 Total: -1.00 -75.51 340.00 2.30 -73.22 By element: Atomic # 1 Polarization: 23.93 SS G_CDS: -0.18 Total: 23.75 kcal Atomic # 6 Polarization: 22.31 SS G_CDS: 5.95 Total: 28.26 kcal Atomic # 7 Polarization: -116.80 SS G_CDS: -6.02 Total: -122.83 kcal Atomic # 8 Polarization: -50.23 SS G_CDS: 0.49 Total: -49.73 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.06 Total: 47.33 kcal Total: -75.51 2.30 -73.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699475731.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.037 kcal (2) G-P(sol) polarization free energy of solvation -75.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds