Wall clock time and date at job start Fri Apr 10 2020 17:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46511 * 1 3 3 C 1.34412 * 124.34939 * 2 1 4 4 O 1.21282 * 124.94155 * 359.59982 * 3 2 1 5 5 C 1.51273 * 110.11622 * 179.57020 * 3 2 1 6 6 C 1.54628 * 104.31323 * 343.67916 * 5 3 2 7 7 C 1.46759 * 124.34812 * 179.97438 * 2 1 3 8 8 H 1.09004 * 110.24543 * 78.03828 * 7 2 1 9 9 C 1.50703 * 110.24748 * 316.12926 * 7 2 1 10 10 O 1.21285 * 119.99676 * 341.45308 * 9 7 2 11 11 N 1.34775 * 120.00326 * 161.45477 * 9 7 2 12 12 C 1.46500 * 120.00138 * 179.97438 * 11 9 7 13 13 C 1.52996 * 109.47078 * 179.97438 * 12 11 9 14 14 O 1.42904 * 112.94430 * 55.33254 * 13 12 11 15 15 C 1.53954 * 113.74269 * 283.74321 * 13 12 11 16 16 N 1.47820 * 86.03143 * 222.08325 * 15 13 12 17 17 C 1.36936 * 134.44769 * 204.63796 * 16 15 13 18 18 H 1.08005 * 119.99809 * 173.35168 * 17 16 15 19 19 C 1.38813 * 120.00652 * 353.35248 * 17 16 15 20 20 N 1.31614 * 119.99534 * 5.06337 * 19 17 16 21 21 Si 1.86799 * 120.00225 * 185.06059 * 19 17 16 22 22 H 1.48501 * 109.46794 * 94.98848 * 21 19 17 23 23 H 1.48497 * 109.47278 * 214.98793 * 21 19 17 24 24 H 1.48495 * 109.47206 * 334.99131 * 21 19 17 25 25 C 1.47574 * 91.05371 * 24.55109 * 16 15 13 26 26 H 1.08996 * 109.46779 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.46424 * 119.97616 * 1 2 3 28 28 H 1.08995 * 109.47057 * 239.98214 * 1 2 3 29 29 H 1.09006 * 110.48948 * 102.42215 * 5 3 2 30 30 H 1.09001 * 110.48982 * 224.93696 * 5 3 2 31 31 H 1.09000 * 110.97200 * 142.98613 * 6 5 3 32 32 H 1.08999 * 110.96646 * 266.74433 * 6 5 3 33 33 H 0.97003 * 119.99409 * 0.02562 * 11 9 7 34 34 H 1.08997 * 109.47040 * 299.99870 * 12 11 9 35 35 H 1.08993 * 109.46981 * 60.00056 * 12 11 9 36 36 H 0.96694 * 114.00093 * 309.66600 * 14 13 12 37 37 H 1.08993 * 113.76331 * 336.34678 * 15 13 12 38 38 H 1.08992 * 113.76873 * 107.74665 * 15 13 12 39 39 H 0.97002 * 119.99891 * 179.97438 * 20 19 17 40 40 H 1.09004 * 113.76654 * 221.15294 * 25 16 15 41 41 H 1.09000 * 113.87862 * 89.76464 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2235 1.1097 0.0000 4 8 1.7947 2.2442 -0.0069 5 6 3.6898 0.7378 0.0107 6 6 3.7042 -0.7482 0.4381 7 6 2.2932 -1.2117 0.0005 8 1 2.3310 -1.6431 -0.9998 9 6 1.7459 -2.2169 0.9809 10 8 0.9846 -1.8594 1.8547 11 7 2.1024 -3.5133 0.8867 12 6 1.5708 -4.4904 1.8400 13 6 2.1281 -5.8772 1.5131 14 8 3.5563 -5.9094 1.4773 15 6 1.4624 -6.5411 0.2939 16 7 1.4748 -7.7844 1.0934 17 6 1.4656 -9.1197 0.7900 18 1 1.5872 -9.8524 1.5740 19 6 1.2999 -9.5316 -0.5252 20 7 1.2516 -8.6405 -1.4927 21 14 1.1456 -11.3504 -0.9220 22 1 -0.2906 -11.7203 -0.9977 23 1 1.7981 -11.6297 -2.2264 24 1 1.8064 -12.1471 0.1427 25 6 1.5033 -7.0091 2.3488 26 1 -0.3633 1.0276 0.0005 27 1 -0.3632 -0.5135 -0.8902 28 1 -0.3633 -0.5141 0.8898 29 1 4.1198 0.8527 -0.9844 30 1 4.2329 1.3477 0.7327 31 1 4.4801 -1.2994 -0.0931 32 1 3.8296 -0.8425 1.5167 33 1 2.7116 -3.7991 0.1880 34 1 1.8655 -4.2090 2.8510 35 1 0.4832 -4.5107 1.7710 36 1 3.9517 -5.2177 0.9294 37 1 0.4616 -6.1655 0.0812 38 1 2.1006 -6.5787 -0.5888 39 1 1.1363 -8.9283 -2.4118 40 1 2.1741 -7.4196 3.1035 41 1 0.5153 -6.7705 2.7425 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699919563.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:44:04 Heat of formation + Delta-G solvation = -78.570859 kcal Electronic energy + Delta-G solvation = -24419.262089 eV Core-core repulsion = 20721.391167 eV Total energy + Delta-G solvation = -3697.870922 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.152 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.97417 -40.80306 -39.81644 -37.30881 -36.45563 -35.34554 -34.01844 -33.67837 -30.74156 -29.26895 -27.63338 -27.31778 -26.69764 -24.04088 -23.25281 -21.77227 -21.00411 -20.53142 -19.11702 -18.65461 -18.02754 -17.45867 -17.18979 -16.88515 -16.60261 -16.34979 -15.87025 -15.75887 -15.24893 -14.97061 -14.81614 -14.65309 -14.51235 -14.37701 -13.87355 -13.66072 -13.50633 -13.33556 -13.06477 -12.93813 -12.85657 -12.75262 -12.52858 -12.20013 -12.02193 -11.76995 -11.43542 -11.12947 -10.94701 -10.91107 -10.69845 -10.18325 -9.74289 -8.91002 -7.92595 -5.23294 1.39145 1.46469 1.47570 1.48820 1.56345 1.82816 2.21140 2.46967 3.09572 3.26465 3.28996 3.36484 3.40609 3.59196 3.73695 3.92639 4.02454 4.10267 4.32378 4.38452 4.42950 4.62104 4.71696 4.76936 4.81552 4.84783 4.86809 4.98354 5.01205 5.07688 5.20264 5.29837 5.33596 5.34369 5.51700 5.92847 6.01064 6.43242 6.90220 6.92986 7.03354 7.15773 7.59578 8.53666 9.24711 Molecular weight = 297.15amu Principal moments of inertia in cm(-1) A = 0.029845 B = 0.003037 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.970501 B = 9216.024582 C = 9368.192717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.606 5.606 3 C 0.504 3.496 4 O -0.585 6.585 5 C -0.143 4.143 6 C -0.109 4.109 7 C 0.111 3.889 8 H 0.140 0.860 9 C 0.509 3.491 10 O -0.570 6.570 11 N -0.706 5.706 12 C 0.120 3.880 13 C 0.102 3.898 14 O -0.539 6.539 15 C 0.147 3.853 16 N -0.637 5.637 17 C -0.235 4.235 18 H 0.080 0.920 19 C -0.062 4.062 20 N -0.948 5.948 21 Si 0.975 3.025 22 H -0.289 1.289 23 H -0.292 1.292 24 H -0.270 1.270 25 C 0.126 3.874 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.065 0.935 29 H 0.137 0.863 30 H 0.115 0.885 31 H 0.147 0.853 32 H 0.082 0.918 33 H 0.415 0.585 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.386 0.614 37 H 0.026 0.974 38 H 0.049 0.951 39 H 0.249 0.751 40 H 0.056 0.944 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.076 15.792 1.293 17.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.339 5.339 3 C 0.294 3.706 4 O -0.465 6.465 5 C -0.182 4.182 6 C -0.147 4.147 7 C 0.004 3.996 8 H 0.157 0.843 9 C 0.295 3.705 10 O -0.448 6.448 11 N -0.360 5.360 12 C -0.006 4.006 13 C 0.059 3.941 14 O -0.346 6.346 15 C 0.021 3.979 16 N -0.363 5.363 17 C -0.363 4.363 18 H 0.097 0.903 19 C -0.256 4.256 20 N -0.597 5.597 21 Si 0.803 3.197 22 H -0.216 1.216 23 H -0.219 1.219 24 H -0.195 1.195 25 C 0.001 3.999 26 H 0.090 0.910 27 H 0.094 0.906 28 H 0.084 0.916 29 H 0.155 0.845 30 H 0.133 0.867 31 H 0.165 0.835 32 H 0.101 0.899 33 H 0.253 0.747 34 H 0.098 0.902 35 H 0.089 0.911 36 H 0.235 0.765 37 H 0.044 0.956 38 H 0.068 0.932 39 H 0.058 0.942 40 H 0.075 0.925 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.119 15.812 2.126 17.087 hybrid contribution -0.539 -0.837 -0.949 1.376 sum 5.580 14.974 1.177 16.023 Atomic orbital electron populations 1.21701 0.78180 1.03082 1.02756 1.48047 1.06911 1.06741 1.72209 1.21778 0.91449 0.83484 0.73841 1.90693 1.79997 1.22813 1.53032 1.22416 0.91069 0.97679 1.07054 1.22804 0.93111 0.95046 1.03763 1.22032 0.92575 0.84662 1.00367 0.84251 1.21089 0.80775 0.83189 0.85413 1.90706 1.36992 1.79860 1.37261 1.45744 1.49354 1.06834 1.34050 1.21703 0.98992 0.86250 0.93630 1.23081 0.81757 0.91799 0.97420 1.86588 1.17276 1.58053 1.72681 1.22834 0.96505 0.84013 0.94546 1.46083 1.86294 1.00991 1.02947 1.19349 1.41794 0.82025 0.93142 0.90270 1.25559 1.02644 1.01824 0.95540 1.69958 1.57244 1.33421 0.99036 0.85114 0.77390 0.79941 0.77233 1.21595 1.21876 1.19482 1.22797 0.97858 0.88642 0.90607 0.91033 0.90606 0.91626 0.84533 0.86706 0.83531 0.89906 0.74728 0.90155 0.91135 0.76472 0.95598 0.93238 0.94192 0.92549 0.91403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.87 10.49 127.77 1.34 3.21 16 2 N -0.61 -12.40 3.00 -822.39 -2.47 -14.87 16 3 C 0.50 11.11 8.02 87.90 0.71 11.81 16 4 O -0.58 -18.37 17.35 -3.03 -0.05 -18.42 16 5 C -0.14 -1.47 6.85 30.58 0.21 -1.26 16 6 C -0.11 -0.80 6.70 31.77 0.21 -0.59 16 7 C 0.11 1.50 3.71 44.82 0.17 1.66 16 8 H 0.14 1.07 8.14 -2.39 -0.02 1.05 16 9 C 0.51 10.25 6.70 87.66 0.59 10.84 16 10 O -0.57 -16.62 14.46 -3.04 -0.04 -16.67 16 11 N -0.71 -12.82 5.33 -463.07 -2.47 -15.29 16 12 C 0.12 2.95 5.26 86.38 0.45 3.41 16 13 C 0.10 3.24 1.49 -10.13 -0.02 3.22 16 14 O -0.54 -16.25 13.50 -148.98 -2.01 -18.26 16 15 C 0.15 6.22 6.84 86.44 0.59 6.81 16 16 N -0.64 -31.49 3.70 -719.58 -2.66 -34.15 16 17 C -0.23 -13.01 10.70 84.03 0.90 -12.11 16 18 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 19 C -0.06 -3.47 5.50 84.86 0.47 -3.00 16 20 N -0.95 -54.83 11.51 21.65 0.25 -54.58 16 21 Si 0.97 44.85 29.56 68.60 2.03 46.88 16 22 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 23 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 24 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 25 C 0.13 4.81 8.34 86.49 0.72 5.54 16 26 H 0.07 1.68 7.53 -2.39 -0.02 1.67 16 27 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.07 1.68 6.16 -2.39 -0.01 1.66 16 29 H 0.14 0.71 8.14 -2.38 -0.02 0.69 16 30 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.15 -0.08 8.14 -2.39 -0.02 -0.10 16 32 H 0.08 0.79 7.92 -2.39 -0.02 0.77 16 33 H 0.42 5.24 7.42 -92.71 -0.69 4.56 16 34 H 0.08 1.94 8.14 -2.39 -0.02 1.93 16 35 H 0.07 1.94 8.09 -2.39 -0.02 1.92 16 36 H 0.39 7.35 7.73 -74.06 -0.57 6.77 16 37 H 0.03 1.15 8.06 -2.39 -0.02 1.13 16 38 H 0.05 2.33 7.37 -2.39 -0.02 2.31 16 39 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 40 H 0.06 2.12 8.14 -2.39 -0.02 2.11 16 41 H 0.07 2.35 8.10 -2.39 -0.02 2.33 16 Total: -1.00 -82.20 341.83 -1.29 -83.49 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -0.20 Total: 12.34 kcal Atomic # 6 Polarization: 23.20 SS G_CDS: 6.34 Total: 29.54 kcal Atomic # 7 Polarization: -111.54 SS G_CDS: -7.35 Total: -118.90 kcal Atomic # 8 Polarization: -51.24 SS G_CDS: -2.11 Total: -53.35 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -82.20 -1.29 -83.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699919563.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.919 kcal (2) G-P(sol) polarization free energy of solvation -82.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds