Wall clock time and date at job start Fri Apr 10 2020 17:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46756 * 124.35175 * 2 1 4 4 C 1.54482 * 105.47815 * 196.99283 * 3 2 1 5 5 C 1.54633 * 101.76174 * 334.58865 * 4 3 2 6 6 H 1.09005 * 110.59749 * 266.06444 * 5 4 3 7 7 C 1.50701 * 110.48681 * 143.47481 * 5 4 3 8 8 O 1.21276 * 120.00006 * 3.76937 * 7 5 4 9 9 N 1.34773 * 119.99619 * 183.77230 * 7 5 4 10 10 C 1.46506 * 120.00016 * 180.02562 * 9 7 5 11 11 C 1.52996 * 109.47359 * 179.97438 * 10 9 7 12 12 O 1.42899 * 113.28362 * 51.93198 * 11 10 9 13 13 C 1.53492 * 114.20562 * 185.00157 * 11 10 9 14 14 N 1.47057 * 87.99013 * 87.51987 * 13 11 10 15 15 C 1.36934 * 136.06067 * 207.08908 * 14 13 11 16 16 H 1.07999 * 120.00080 * 6.78086 * 15 14 13 17 17 C 1.38812 * 120.00171 * 186.78191 * 15 14 13 18 18 N 1.31624 * 120.00106 * 172.27726 * 17 15 14 19 19 Si 1.86801 * 120.00094 * 352.27301 * 17 15 14 20 20 H 1.48499 * 109.47160 * 175.35756 * 19 17 15 21 21 H 1.48497 * 109.46941 * 295.35759 * 19 17 15 22 22 H 1.48499 * 109.46898 * 55.35782 * 19 17 15 23 23 C 1.47063 * 87.88479 * 27.33954 * 14 13 11 24 24 C 1.34416 * 124.34640 * 179.97438 * 2 1 3 25 25 O 1.21282 * 124.94388 * 359.57792 * 24 2 1 26 26 H 1.09001 * 109.47348 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47404 * 300.04880 * 1 2 3 28 28 H 1.09004 * 109.46792 * 60.04629 * 1 2 3 29 29 H 1.09005 * 110.24904 * 315.99634 * 3 2 1 30 30 H 1.09004 * 110.24577 * 77.90693 * 3 2 1 31 31 H 1.08993 * 110.97430 * 216.46697 * 4 3 2 32 32 H 1.09001 * 110.96641 * 92.69667 * 4 3 2 33 33 H 0.96997 * 120.00406 * 359.97438 * 9 7 5 34 34 H 1.09003 * 109.46617 * 59.99277 * 10 9 7 35 35 H 1.08995 * 109.46838 * 300.00033 * 10 9 7 36 36 H 0.96705 * 114.00195 * 313.06707 * 12 11 10 37 37 H 1.09005 * 113.46746 * 332.73176 * 13 11 10 38 38 H 1.09001 * 113.46573 * 202.30420 * 13 11 10 39 39 H 0.97000 * 119.99965 * 4.85696 * 18 17 15 40 40 H 1.09008 * 113.46951 * 87.43981 * 23 14 13 41 41 H 1.08997 * 113.47088 * 217.87462 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2116 0.0000 4 6 3.7012 0.7486 -0.4351 5 6 3.6897 -0.7379 -0.0093 6 1 4.1196 -0.8552 0.9856 7 6 4.4406 -1.5789 -1.0093 8 8 5.0044 -1.0505 -1.9441 9 7 4.4854 -2.9181 -0.8649 10 6 5.2158 -3.7356 -1.8368 11 6 5.1108 -5.2105 -1.4438 12 8 3.7664 -5.6424 -1.2246 13 6 5.9403 -6.1566 -2.3230 14 7 7.0763 -5.9151 -1.4210 15 6 8.4414 -5.9349 -1.5274 16 1 8.9059 -6.0697 -2.4931 17 6 9.2282 -5.7818 -0.3941 18 7 10.5313 -5.9518 -0.4697 19 14 8.4379 -5.3345 1.2383 20 1 9.4698 -5.3412 2.3062 21 1 7.8344 -3.9811 1.1416 22 1 7.3813 -6.3255 1.5647 23 6 6.1013 -5.6491 -0.3527 24 6 2.2233 -1.1098 0.0005 25 8 1.7945 -2.2442 0.0083 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5146 0.8895 28 1 -0.3633 0.5131 -0.8905 29 1 1.8986 1.9382 -0.7105 30 1 2.3290 1.6439 1.0000 31 1 4.4754 1.3009 0.0973 32 1 3.8273 0.8443 -1.5135 33 1 4.0347 -3.3407 -0.1171 34 1 6.2640 -3.4366 -1.8482 35 1 4.7862 -3.5919 -2.8282 36 1 3.2466 -5.0442 -0.6703 37 1 6.1008 -5.7811 -3.3336 38 1 5.5849 -7.1870 -2.3073 39 1 10.9501 -6.1144 -1.3294 40 1 5.7884 -6.5456 0.1826 41 1 6.3991 -4.8411 0.3155 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699919572.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:44:08 Heat of formation + Delta-G solvation = -42.015475 kcal Electronic energy + Delta-G solvation = -24922.823225 eV Core-core repulsion = 21226.537463 eV Total energy + Delta-G solvation = -3696.285762 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.152 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.23012 -39.72888 -38.66740 -36.79894 -35.30385 -34.10317 -33.19395 -32.26096 -29.15309 -27.97816 -27.17392 -25.95427 -25.50433 -22.74792 -21.65677 -20.92249 -19.93668 -19.18819 -17.99374 -17.47063 -17.33196 -16.79980 -16.45522 -15.87247 -15.62356 -15.07228 -14.86970 -14.29718 -14.13719 -14.08241 -13.70766 -13.55157 -13.16625 -13.15761 -12.93398 -12.78306 -12.54801 -12.19580 -12.13536 -12.02701 -11.64859 -11.46414 -11.02006 -10.69105 -10.39150 -10.24773 -10.08535 -9.94531 -9.24063 -9.16961 -9.09040 -8.89134 -8.86895 -7.20223 -6.35301 -3.26805 2.04068 2.41212 2.71785 3.12136 3.36707 3.41404 3.61699 3.85038 4.02264 4.33341 4.48106 4.53516 4.56262 4.73949 4.81204 4.86118 4.87349 4.90908 5.04581 5.09353 5.11066 5.32324 5.47606 5.48070 5.71873 5.73000 6.02517 6.05858 6.13136 6.24674 6.28328 6.31243 6.44838 6.60120 6.64624 7.02425 7.42433 7.70938 7.87320 8.14305 8.21355 8.94584 9.46007 10.30495 11.17729 Molecular weight = 297.15amu Principal moments of inertia in cm(-1) A = 0.021730 B = 0.004189 C = 0.003927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.222919 B = 6682.875545 C = 7127.804636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.621 5.621 3 C 0.101 3.899 4 C -0.116 4.116 5 C -0.151 4.151 6 H 0.138 0.862 7 C 0.533 3.467 8 O -0.531 6.531 9 N -0.715 5.715 10 C 0.123 3.877 11 C 0.065 3.935 12 O -0.547 6.547 13 C 0.144 3.856 14 N -0.620 5.620 15 C -0.304 4.304 16 H 0.086 0.914 17 C -0.022 4.022 18 N -0.932 5.932 19 Si 1.070 2.930 20 H -0.294 1.294 21 H -0.294 1.294 22 H -0.286 1.286 23 C 0.079 3.921 24 C 0.528 3.472 25 O -0.518 6.518 26 H 0.084 0.916 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.099 0.901 32 H 0.102 0.898 33 H 0.402 0.598 34 H 0.096 0.904 35 H 0.075 0.925 36 H 0.370 0.630 37 H 0.054 0.946 38 H 0.053 0.947 39 H 0.262 0.738 40 H 0.056 0.944 41 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.885 15.942 3.317 26.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.356 5.356 3 C -0.022 4.022 4 C -0.154 4.154 5 C -0.176 4.176 6 H 0.156 0.844 7 C 0.317 3.683 8 O -0.407 6.407 9 N -0.367 5.367 10 C 0.000 4.000 11 C 0.023 3.977 12 O -0.351 6.351 13 C 0.017 3.983 14 N -0.350 5.350 15 C -0.429 4.429 16 H 0.104 0.896 17 C -0.221 4.221 18 N -0.574 5.574 19 Si 0.902 3.098 20 H -0.221 1.221 21 H -0.223 1.223 22 H -0.213 1.213 23 C -0.047 4.047 24 C 0.314 3.686 25 O -0.394 6.394 26 H 0.103 0.897 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.102 0.898 30 H 0.094 0.906 31 H 0.118 0.882 32 H 0.120 0.880 33 H 0.238 0.762 34 H 0.114 0.886 35 H 0.093 0.907 36 H 0.217 0.783 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -20.001 15.435 3.829 25.553 hybrid contribution -0.730 0.006 -0.794 1.079 sum -20.732 15.441 3.035 26.028 Atomic orbital electron populations 1.21603 0.77514 1.04067 1.01652 1.48060 1.06740 1.07270 1.73484 1.22201 0.90451 0.87304 1.02240 1.22607 0.96256 0.91727 1.04809 1.22207 0.94774 0.97980 1.02618 0.84448 1.19618 0.80682 0.82380 0.85669 1.90723 1.45623 1.72120 1.32269 1.45878 1.54100 1.06543 1.30168 1.21618 0.98626 0.87956 0.91815 1.23665 0.81160 0.92864 1.00022 1.86567 1.23436 1.51457 1.73641 1.22273 0.85375 0.96273 0.94394 1.45671 1.00418 1.82056 1.06869 1.20105 0.76894 1.49270 0.96679 0.89593 1.25720 0.95530 0.99173 1.01715 1.70918 1.09069 1.50444 1.26950 0.83704 0.74028 0.75952 0.76078 1.22132 1.22268 1.21302 1.23460 0.89133 0.98695 0.93388 1.20336 0.87961 0.84737 0.75528 1.90742 1.78028 1.20682 1.49909 0.89675 0.91841 0.91867 0.89826 0.90574 0.88248 0.87974 0.76232 0.88568 0.90661 0.78289 0.92753 0.92891 0.92787 0.92661 0.93086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.57 11.14 59.85 0.67 1.24 16 2 N -0.62 -5.07 3.33 -180.29 -0.60 -5.67 16 3 C 0.10 0.56 7.35 -3.12 -0.02 0.53 16 4 C -0.12 -0.88 6.45 -25.10 -0.16 -1.04 16 5 C -0.15 -1.54 3.33 -91.78 -0.31 -1.85 16 6 H 0.14 1.11 8.14 -51.93 -0.42 0.69 16 7 C 0.53 7.78 7.16 -10.99 -0.08 7.70 16 8 O -0.53 -9.41 15.52 5.56 0.09 -9.32 16 9 N -0.71 -10.69 5.02 -60.29 -0.30 -10.99 16 10 C 0.12 2.16 5.32 -4.04 -0.02 2.14 16 11 C 0.07 1.20 1.73 -89.98 -0.16 1.05 16 12 O -0.55 -9.10 13.56 -35.23 -0.48 -9.58 16 13 C 0.14 2.99 8.10 -8.53 -0.07 2.92 16 14 N -0.62 -15.43 3.47 -184.63 -0.64 -16.07 16 15 C -0.30 -8.81 11.08 -15.06 -0.17 -8.97 16 16 H 0.09 2.61 8.05 -52.49 -0.42 2.19 16 17 C -0.02 -0.67 5.50 -17.43 -0.10 -0.76 16 18 N -0.93 -29.57 13.70 55.49 0.76 -28.81 16 19 Si 1.07 26.97 25.13 -169.99 -4.27 22.69 16 20 H -0.29 -7.52 7.11 56.52 0.40 -7.11 16 21 H -0.29 -6.98 6.64 56.52 0.38 -6.61 16 22 H -0.29 -6.76 6.13 56.52 0.35 -6.42 16 23 C 0.08 1.71 5.13 -8.39 -0.04 1.67 16 24 C 0.53 5.84 7.44 -10.86 -0.08 5.75 16 25 O -0.52 -7.14 16.17 5.56 0.09 -7.05 16 26 H 0.08 0.63 7.53 -51.93 -0.39 0.24 16 27 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.10 0.97 7.06 -51.93 -0.37 0.60 16 33 H 0.40 5.33 6.45 -40.82 -0.26 5.06 16 34 H 0.10 1.98 7.94 -51.93 -0.41 1.56 16 35 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 36 H 0.37 5.00 7.50 45.56 0.34 5.35 16 37 H 0.05 1.07 8.12 -51.93 -0.42 0.65 16 38 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 39 H 0.26 8.20 8.73 -40.82 -0.36 7.84 16 40 H 0.06 1.20 7.73 -51.92 -0.40 0.80 16 41 H 0.05 1.11 4.63 -51.93 -0.24 0.87 16 LS Contribution 334.41 15.07 5.04 5.04 Total: -1.00 -36.45 334.41 -6.05 -42.50 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -5.19 Total: 6.91 kcal Atomic # 6 Polarization: 10.91 SS G_CDS: -0.54 Total: 10.37 kcal Atomic # 7 Polarization: -60.77 SS G_CDS: -0.78 Total: -61.55 kcal Atomic # 8 Polarization: -25.65 SS G_CDS: -0.30 Total: -25.95 kcal Atomic # 14 Polarization: 26.97 SS G_CDS: -4.27 Total: 22.69 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -36.45 -6.05 -42.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699919572.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.481 kcal (2) G-P(sol) polarization free energy of solvation -36.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds