Wall clock time and date at job start Fri Apr 10 2020 17:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46756 * 124.35175 * 2 1 4 4 C 1.54482 * 105.47815 * 196.99283 * 3 2 1 5 5 C 1.54633 * 101.76174 * 334.58865 * 4 3 2 6 6 H 1.09005 * 110.59749 * 266.06444 * 5 4 3 7 7 C 1.50701 * 110.48681 * 143.47481 * 5 4 3 8 8 O 1.21276 * 120.00006 * 3.76937 * 7 5 4 9 9 N 1.34773 * 119.99619 * 183.77230 * 7 5 4 10 10 C 1.46506 * 120.00016 * 180.02562 * 9 7 5 11 11 C 1.52996 * 109.47359 * 179.97438 * 10 9 7 12 12 O 1.42899 * 113.28362 * 51.93198 * 11 10 9 13 13 C 1.53492 * 114.20562 * 185.00157 * 11 10 9 14 14 N 1.47057 * 87.99013 * 87.51987 * 13 11 10 15 15 C 1.36934 * 136.06067 * 207.08908 * 14 13 11 16 16 H 1.07999 * 120.00080 * 6.78086 * 15 14 13 17 17 C 1.38812 * 120.00171 * 186.78191 * 15 14 13 18 18 N 1.31624 * 120.00106 * 172.27726 * 17 15 14 19 19 Si 1.86801 * 120.00094 * 352.27301 * 17 15 14 20 20 H 1.48499 * 109.47160 * 175.35756 * 19 17 15 21 21 H 1.48497 * 109.46941 * 295.35759 * 19 17 15 22 22 H 1.48499 * 109.46898 * 55.35782 * 19 17 15 23 23 C 1.47063 * 87.88479 * 27.33954 * 14 13 11 24 24 C 1.34416 * 124.34640 * 179.97438 * 2 1 3 25 25 O 1.21282 * 124.94388 * 359.57792 * 24 2 1 26 26 H 1.09001 * 109.47348 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47404 * 300.04880 * 1 2 3 28 28 H 1.09004 * 109.46792 * 60.04629 * 1 2 3 29 29 H 1.09005 * 110.24904 * 315.99634 * 3 2 1 30 30 H 1.09004 * 110.24577 * 77.90693 * 3 2 1 31 31 H 1.08993 * 110.97430 * 216.46697 * 4 3 2 32 32 H 1.09001 * 110.96641 * 92.69667 * 4 3 2 33 33 H 0.96997 * 120.00406 * 359.97438 * 9 7 5 34 34 H 1.09003 * 109.46617 * 59.99277 * 10 9 7 35 35 H 1.08995 * 109.46838 * 300.00033 * 10 9 7 36 36 H 0.96705 * 114.00195 * 313.06707 * 12 11 10 37 37 H 1.09005 * 113.46746 * 332.73176 * 13 11 10 38 38 H 1.09001 * 113.46573 * 202.30420 * 13 11 10 39 39 H 0.97000 * 119.99965 * 4.85696 * 18 17 15 40 40 H 1.09008 * 113.46951 * 87.43981 * 23 14 13 41 41 H 1.08997 * 113.47088 * 217.87462 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2116 0.0000 4 6 3.7012 0.7486 -0.4351 5 6 3.6897 -0.7379 -0.0093 6 1 4.1196 -0.8552 0.9856 7 6 4.4406 -1.5789 -1.0093 8 8 5.0044 -1.0505 -1.9441 9 7 4.4854 -2.9181 -0.8649 10 6 5.2158 -3.7356 -1.8368 11 6 5.1108 -5.2105 -1.4438 12 8 3.7664 -5.6424 -1.2246 13 6 5.9403 -6.1566 -2.3230 14 7 7.0763 -5.9151 -1.4210 15 6 8.4414 -5.9349 -1.5274 16 1 8.9059 -6.0697 -2.4931 17 6 9.2282 -5.7818 -0.3941 18 7 10.5313 -5.9518 -0.4697 19 14 8.4379 -5.3345 1.2383 20 1 9.4698 -5.3412 2.3062 21 1 7.8344 -3.9811 1.1416 22 1 7.3813 -6.3255 1.5647 23 6 6.1013 -5.6491 -0.3527 24 6 2.2233 -1.1098 0.0005 25 8 1.7945 -2.2442 0.0083 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5146 0.8895 28 1 -0.3633 0.5131 -0.8905 29 1 1.8986 1.9382 -0.7105 30 1 2.3290 1.6439 1.0000 31 1 4.4754 1.3009 0.0973 32 1 3.8273 0.8443 -1.5135 33 1 4.0347 -3.3407 -0.1171 34 1 6.2640 -3.4366 -1.8482 35 1 4.7862 -3.5919 -2.8282 36 1 3.2466 -5.0442 -0.6703 37 1 6.1008 -5.7811 -3.3336 38 1 5.5849 -7.1870 -2.3073 39 1 10.9501 -6.1144 -1.3294 40 1 5.7884 -6.5456 0.1826 41 1 6.3991 -4.8411 0.3155 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699919572.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:44:07 Heat of formation + Delta-G solvation = -73.541383 kcal Electronic energy + Delta-G solvation = -24924.190291 eV Core-core repulsion = 21226.537463 eV Total energy + Delta-G solvation = -3697.652828 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.152 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.11034 -41.16697 -39.89509 -37.56841 -36.87186 -35.39244 -34.45582 -33.86556 -30.50757 -29.23901 -27.85112 -27.34388 -27.19705 -23.92476 -23.14658 -21.89054 -21.08025 -20.64389 -19.57346 -19.04275 -18.22840 -17.83514 -17.47993 -17.33108 -16.69157 -16.41090 -16.11739 -15.71336 -15.45109 -15.11646 -15.01665 -14.77003 -14.70414 -14.29739 -13.84722 -13.70324 -13.66524 -13.47542 -13.39935 -13.11617 -12.80750 -12.67381 -12.54385 -12.12736 -12.04081 -11.83563 -11.41979 -11.24438 -11.05870 -10.95665 -10.64993 -10.28316 -9.74280 -9.29230 -8.70768 -5.53870 1.16105 1.33666 1.44540 1.47734 1.63783 1.89675 2.13808 2.49734 2.71777 3.03219 3.15433 3.17408 3.27218 3.32207 3.61244 3.73580 3.93658 4.13608 4.18229 4.38378 4.39794 4.42787 4.54081 4.59675 4.66603 4.67258 4.70134 4.74155 4.90064 4.98957 5.01074 5.08632 5.10848 5.21607 5.47961 5.89296 5.95939 6.27992 6.60065 6.63691 6.96134 7.02219 7.24992 8.17174 8.85081 Molecular weight = 297.15amu Principal moments of inertia in cm(-1) A = 0.021730 B = 0.004189 C = 0.003927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.222919 B = 6682.875545 C = 7127.804636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.618 5.618 3 C 0.104 3.896 4 C -0.114 4.114 5 C -0.147 4.147 6 H 0.163 0.837 7 C 0.527 3.473 8 O -0.568 6.568 9 N -0.711 5.711 10 C 0.134 3.866 11 C 0.099 3.901 12 O -0.542 6.542 13 C 0.136 3.864 14 N -0.647 5.647 15 C -0.292 4.292 16 H 0.056 0.944 17 C -0.081 4.081 18 N -0.967 5.967 19 Si 1.106 2.894 20 H -0.301 1.301 21 H -0.272 1.272 22 H -0.260 1.260 23 C 0.074 3.926 24 C 0.519 3.481 25 O -0.555 6.555 26 H 0.067 0.933 27 H 0.087 0.913 28 H 0.078 0.922 29 H 0.103 0.897 30 H 0.105 0.895 31 H 0.121 0.879 32 H 0.079 0.921 33 H 0.412 0.588 34 H 0.064 0.936 35 H 0.078 0.922 36 H 0.388 0.612 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.248 0.752 40 H 0.063 0.937 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.946 17.887 5.015 30.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.351 5.351 3 C -0.018 4.018 4 C -0.152 4.152 5 C -0.171 4.171 6 H 0.180 0.820 7 C 0.313 3.687 8 O -0.446 6.446 9 N -0.364 5.364 10 C 0.009 3.991 11 C 0.056 3.944 12 O -0.348 6.348 13 C 0.010 3.990 14 N -0.378 5.378 15 C -0.419 4.419 16 H 0.074 0.926 17 C -0.273 4.273 18 N -0.612 5.612 19 Si 0.932 3.068 20 H -0.229 1.229 21 H -0.199 1.199 22 H -0.185 1.185 23 C -0.051 4.051 24 C 0.305 3.695 25 O -0.434 6.434 26 H 0.086 0.914 27 H 0.106 0.894 28 H 0.097 0.903 29 H 0.121 0.879 30 H 0.124 0.876 31 H 0.139 0.861 32 H 0.098 0.902 33 H 0.250 0.750 34 H 0.082 0.918 35 H 0.096 0.904 36 H 0.238 0.762 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.057 0.943 40 H 0.080 0.920 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -23.152 17.418 5.520 29.494 hybrid contribution 0.129 -0.576 -1.453 1.568 sum -23.023 16.842 4.068 28.814 Atomic orbital electron populations 1.21772 0.76306 1.03567 1.03608 1.48250 1.07680 1.07338 1.71800 1.22417 0.88498 0.86436 1.04448 1.22662 0.98560 0.90192 1.03766 1.22277 0.93964 0.98473 1.02348 0.82005 1.20418 0.80139 0.82252 0.85912 1.90707 1.47206 1.72710 1.34025 1.45841 1.53815 1.06821 1.29972 1.21289 0.97202 0.87766 0.92838 1.22997 0.81564 0.92516 0.97348 1.86537 1.22221 1.52000 1.74058 1.22460 0.84376 0.97423 0.94727 1.45633 0.99893 1.82622 1.09634 1.19963 0.79359 1.47172 0.95403 0.92645 1.27064 0.95346 0.99477 1.05385 1.71023 1.10442 1.53478 1.26215 0.83297 0.73945 0.77493 0.72078 1.22920 1.19864 1.18490 1.23637 0.88889 0.99021 0.93581 1.20481 0.88430 0.84932 0.75660 1.90712 1.78573 1.22111 1.51983 0.91434 0.89408 0.90348 0.87873 0.87650 0.86055 0.90189 0.75037 0.91758 0.90420 0.76234 0.92097 0.91983 0.94295 0.91976 0.92882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.82 11.14 127.77 1.42 2.25 16 2 N -0.62 -8.18 3.33 -842.90 -2.81 -10.99 16 3 C 0.10 0.73 7.35 86.83 0.64 1.36 16 4 C -0.11 -1.41 6.45 31.65 0.20 -1.21 16 5 C -0.15 -2.63 3.33 -11.54 -0.04 -2.67 16 6 H 0.16 2.08 8.14 -2.38 -0.02 2.06 16 7 C 0.53 14.73 7.16 87.66 0.63 15.36 16 8 O -0.57 -19.95 15.52 -3.02 -0.05 -20.00 16 9 N -0.71 -20.19 5.02 -463.06 -2.32 -22.51 16 10 C 0.13 4.56 5.32 86.38 0.46 5.02 16 11 C 0.10 3.45 1.73 -10.38 -0.02 3.43 16 12 O -0.54 -16.46 13.56 -148.98 -2.02 -18.48 16 13 C 0.14 5.52 8.10 83.17 0.67 6.19 16 14 N -0.65 -32.03 3.47 -738.52 -2.56 -34.59 16 15 C -0.29 -17.31 11.08 84.03 0.93 -16.38 16 16 H 0.06 3.53 8.05 -2.91 -0.02 3.51 16 17 C -0.08 -4.90 5.50 84.86 0.47 -4.43 16 18 N -0.97 -63.27 13.70 21.65 0.30 -62.97 16 19 Si 1.11 53.83 25.13 68.60 1.72 55.56 16 20 H -0.30 -14.95 7.11 99.48 0.71 -14.24 16 21 H -0.27 -12.10 6.64 99.48 0.66 -11.44 16 22 H -0.26 -11.42 6.13 99.48 0.61 -10.81 16 23 C 0.07 3.04 5.13 83.26 0.43 3.47 16 24 C 0.52 10.30 7.44 87.90 0.65 10.95 16 25 O -0.55 -14.43 16.17 -3.04 -0.05 -14.48 16 26 H 0.07 0.89 7.53 -2.39 -0.02 0.88 16 27 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 28 H 0.08 0.51 8.14 -2.38 -0.02 0.49 16 29 H 0.10 0.39 8.14 -2.38 -0.02 0.37 16 30 H 0.11 0.23 8.14 -2.38 -0.02 0.21 16 31 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.08 1.39 7.06 -2.39 -0.02 1.38 16 33 H 0.41 9.99 6.45 -92.71 -0.60 9.39 16 34 H 0.06 2.65 7.94 -2.39 -0.02 2.63 16 35 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 36 H 0.39 9.26 7.50 -74.05 -0.56 8.70 16 37 H 0.06 2.37 8.12 -2.38 -0.02 2.35 16 38 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 39 H 0.25 16.28 8.73 -92.71 -0.81 15.47 16 40 H 0.06 2.52 7.73 -2.38 -0.02 2.50 16 41 H 0.05 2.18 4.63 -2.39 -0.01 2.17 16 Total: -1.00 -81.53 334.41 -1.61 -83.14 By element: Atomic # 1 Polarization: 22.24 SS G_CDS: -0.27 Total: 21.97 kcal Atomic # 6 Polarization: 16.90 SS G_CDS: 6.45 Total: 23.35 kcal Atomic # 7 Polarization: -123.67 SS G_CDS: -7.40 Total: -131.07 kcal Atomic # 8 Polarization: -50.84 SS G_CDS: -2.12 Total: -52.96 kcal Atomic # 14 Polarization: 53.83 SS G_CDS: 1.72 Total: 55.56 kcal Total: -81.53 -1.61 -83.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699919572.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.601 kcal (2) G-P(sol) polarization free energy of solvation -81.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds