Wall clock time and date at job start Fri Apr 10 2020 17:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46796 * 2 1 4 4 C 1.53001 * 109.46508 * 119.99286 * 2 1 3 5 5 N 1.46507 * 109.46637 * 174.99939 * 4 2 1 6 6 C 1.36938 * 119.99616 * 180.02562 * 5 4 2 7 7 H 1.07998 * 120.00430 * 359.97438 * 6 5 4 8 8 C 1.38812 * 119.99364 * 180.02562 * 6 5 4 9 9 N 1.31630 * 119.99727 * 180.02562 * 8 6 5 10 10 Si 1.86799 * 120.00608 * 359.97438 * 8 6 5 11 11 H 1.48502 * 109.47098 * 89.99633 * 10 8 6 12 12 H 1.48493 * 109.47307 * 210.00122 * 10 8 6 13 13 H 1.48501 * 109.47068 * 330.00181 * 10 8 6 14 14 N 1.46497 * 109.47335 * 239.99136 * 2 1 3 15 15 C 1.34777 * 119.99525 * 84.99977 * 14 2 1 16 16 O 1.21283 * 120.00463 * 0.02562 * 15 14 2 17 17 C 1.50700 * 119.99675 * 179.72583 * 15 14 2 18 18 C 1.53004 * 109.47208 * 180.27843 * 17 15 14 19 19 N 1.46499 * 109.47198 * 179.97438 * 18 17 15 20 20 N 1.40171 * 126.34749 * 269.68647 * 19 18 17 21 21 C 1.29408 * 108.13685 * 179.88043 * 20 19 18 22 22 N 1.37354 * 108.82927 * 0.38258 * 21 20 19 23 23 C 1.46502 * 125.83397 * 179.77436 * 22 21 20 24 24 C 1.34818 * 108.33687 * 359.75245 * 22 21 20 25 25 O 1.21818 * 126.30185 * 179.97438 * 24 22 21 26 26 H 1.08998 * 109.46811 * 60.00625 * 1 2 3 27 27 H 1.08994 * 109.47201 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47273 * 300.00977 * 1 2 3 29 29 H 1.08995 * 109.47553 * 294.99926 * 4 2 1 30 30 H 1.08998 * 109.47075 * 55.00372 * 4 2 1 31 31 H 0.97000 * 120.00165 * 0.02562 * 5 4 2 32 32 H 0.97000 * 119.99801 * 179.97438 * 9 8 6 33 33 H 0.97000 * 120.00580 * 265.00723 * 14 2 1 34 34 H 1.09009 * 109.47352 * 300.27556 * 17 15 14 35 35 H 1.08998 * 109.47585 * 60.27844 * 17 15 14 36 36 H 1.09000 * 109.46887 * 300.00372 * 18 17 15 37 37 H 1.08998 * 109.46846 * 59.99549 * 18 17 15 38 38 H 1.07999 * 125.58168 * 180.14009 * 21 20 19 39 39 H 1.09000 * 109.46889 * 269.97989 * 23 22 21 40 40 H 1.08996 * 109.47086 * 29.97463 * 23 22 21 41 41 H 1.09001 * 109.47544 * 149.97687 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 7 3.5000 -0.8263 1.1907 6 6 4.1837 -1.4387 2.2070 7 1 3.6466 -1.8437 3.0519 8 6 5.5671 -1.5378 2.1517 9 7 6.2243 -2.1269 3.1283 10 14 6.4962 -0.8366 0.6907 11 1 6.8569 0.5774 0.9658 12 1 7.7323 -1.6277 0.4641 13 1 5.6380 -0.9020 -0.5194 14 7 2.0185 -0.6908 -1.1960 15 6 2.1472 -0.0185 -2.3570 16 8 1.8591 1.1584 -2.4116 17 6 2.6554 -0.7275 -3.5859 18 6 2.7122 0.2568 -4.7558 19 7 3.2068 -0.4323 -5.9503 20 7 4.5457 -0.5449 -6.3498 21 6 4.5819 -1.2249 -7.4502 22 7 3.2988 -1.5644 -7.8039 23 6 2.9107 -2.3318 -8.9900 24 6 2.4576 -1.0713 -6.8729 25 8 1.2445 -1.1818 -6.8661 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5140 0.8898 29 1 1.7516 -0.1581 2.1370 30 1 1.6053 -1.7197 1.2953 31 1 3.9825 -0.4622 0.4321 32 1 7.1910 -2.1965 3.0894 33 1 2.2491 -1.6319 -1.1524 34 1 3.6539 -1.1197 -3.3923 35 1 1.9842 -1.5494 -3.8349 36 1 1.7138 0.6491 -4.9494 37 1 3.3834 1.0788 -4.5068 38 1 5.4744 -1.4800 -8.0022 39 1 2.7314 -1.6499 -9.8212 40 1 3.7111 -3.0231 -9.2534 41 1 2.0008 -2.8933 -8.7778 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754277061.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:44:23 Heat of formation + Delta-G solvation = 22.921636 kcal Electronic energy + Delta-G solvation = -23864.045119 eV Core-core repulsion = 20202.867993 eV Total energy + Delta-G solvation = -3661.177126 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.159 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.66955 -39.76293 -37.48536 -36.58578 -35.78352 -33.76075 -33.04194 -31.56390 -30.58495 -29.66053 -27.76446 -26.00935 -25.01616 -22.75865 -22.21536 -21.46717 -20.82075 -20.19105 -18.06952 -17.75941 -17.10848 -16.78363 -16.32401 -15.93977 -15.81603 -15.33326 -14.84921 -14.66060 -14.23689 -14.01140 -13.71084 -13.40894 -13.17910 -12.93266 -12.81740 -12.62545 -12.47199 -12.40087 -12.24393 -12.13295 -11.85449 -11.41870 -11.11232 -10.90348 -10.52869 -10.49200 -10.41619 -10.16111 -9.76100 -9.64119 -8.97746 -8.86464 -8.82574 -7.29663 -5.81146 -3.17548 1.47497 1.67028 2.40846 2.73074 2.79746 3.34091 3.38742 3.39197 3.43853 4.12543 4.40896 4.55483 4.63679 4.64638 4.78309 4.86973 4.97702 5.06929 5.10714 5.28622 5.35736 5.43474 5.47262 5.55952 5.60340 5.69320 5.81613 5.91744 5.94378 6.03772 6.24619 6.30014 6.36340 6.57376 6.79637 7.34379 7.66869 7.78156 7.94047 8.33328 8.37795 9.16062 9.88279 10.07720 11.36990 Molecular weight = 297.16amu Principal moments of inertia in cm(-1) A = 0.015469 B = 0.003698 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.581202 B = 7570.391630 C = 8879.042321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.129 3.871 3 H 0.088 0.912 4 C 0.149 3.851 5 N -0.755 5.755 6 C -0.247 4.247 7 H 0.091 0.909 8 C 0.006 3.994 9 N -0.933 5.933 10 Si 0.885 3.115 11 H -0.284 1.284 12 H -0.290 1.290 13 H -0.279 1.279 14 N -0.713 5.713 15 C 0.522 3.478 16 O -0.548 6.548 17 C -0.163 4.163 18 C 0.178 3.822 19 N -0.450 5.450 20 N -0.277 5.277 21 C 0.250 3.750 22 N -0.564 5.564 23 C 0.099 3.901 24 C 0.642 3.358 25 O -0.553 6.553 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.043 0.957 30 H 0.033 0.967 31 H 0.363 0.637 32 H 0.260 0.740 33 H 0.405 0.595 34 H 0.103 0.897 35 H 0.098 0.902 36 H 0.104 0.896 37 H 0.105 0.895 38 H 0.231 0.769 39 H 0.072 0.928 40 H 0.088 0.912 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.280 -0.283 -24.680 25.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.024 3.976 3 H 0.106 0.894 4 C 0.021 3.979 5 N -0.402 5.402 6 C -0.377 4.377 7 H 0.109 0.891 8 C -0.190 4.190 9 N -0.580 5.580 10 Si 0.715 3.285 11 H -0.210 1.210 12 H -0.217 1.217 13 H -0.205 1.205 14 N -0.364 5.364 15 C 0.307 3.693 16 O -0.426 6.426 17 C -0.204 4.204 18 C 0.057 3.943 19 N -0.271 5.271 20 N -0.097 5.097 21 C -0.049 4.049 22 N -0.293 5.293 23 C -0.043 4.043 24 C 0.341 3.659 25 O -0.427 6.427 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.061 0.939 30 H 0.051 0.949 31 H 0.196 0.804 32 H 0.070 0.930 33 H 0.240 0.760 34 H 0.121 0.879 35 H 0.116 0.884 36 H 0.122 0.878 37 H 0.123 0.877 38 H 0.247 0.753 39 H 0.091 0.909 40 H 0.107 0.893 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.807 0.890 -23.703 24.677 hybrid contribution 0.697 -0.551 -1.488 1.733 sum -6.110 0.339 -25.191 25.923 Atomic orbital electron populations 1.22087 0.95090 1.02083 1.02332 1.21335 0.93846 0.97966 0.84411 0.89383 1.20973 0.85470 0.97650 0.93816 1.42707 1.01329 1.71471 1.24655 1.19050 0.89884 1.29642 0.99094 0.89126 1.24676 0.96185 1.00507 0.97635 1.69707 1.07370 1.48381 1.32564 0.86551 0.79738 0.79031 0.83142 1.21015 1.21680 1.20484 1.46059 1.66397 1.14560 1.09372 1.20196 0.77511 0.87152 0.84421 1.90695 1.50910 1.15789 1.85238 1.22056 1.04475 1.00377 0.93493 1.21198 1.01479 0.93018 0.78596 1.49061 1.03032 1.51541 1.23423 1.77078 0.99608 1.20302 1.12741 1.25968 0.89371 0.95518 0.94019 1.45961 1.07281 1.51273 1.24812 1.21816 1.02858 0.95463 0.84162 1.16814 0.85821 0.81789 0.81445 1.91097 1.08618 1.65180 1.77792 0.92327 0.92422 0.91447 0.93910 0.94926 0.80441 0.93000 0.75997 0.87881 0.88394 0.87767 0.87703 0.75282 0.90908 0.89291 0.89400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 9.48 37.16 0.35 -1.71 16 2 C 0.13 2.04 2.73 -67.93 -0.19 1.85 16 3 H 0.09 1.55 7.58 -51.93 -0.39 1.15 16 4 C 0.15 2.75 5.82 -4.04 -0.02 2.72 16 5 N -0.76 -17.55 5.24 -59.91 -0.31 -17.87 16 6 C -0.25 -6.90 10.47 -15.06 -0.16 -7.05 16 7 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 8 C 0.01 0.17 5.50 -17.43 -0.10 0.08 16 9 N -0.93 -29.13 13.97 55.49 0.78 -28.36 16 10 Si 0.89 22.20 27.74 -169.99 -4.71 17.48 16 11 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 13 H -0.28 -6.54 6.52 56.52 0.37 -6.17 16 14 N -0.71 -10.73 4.52 -53.80 -0.24 -10.98 16 15 C 0.52 7.93 7.79 -10.98 -0.09 7.85 16 16 O -0.55 -9.76 15.64 5.55 0.09 -9.67 16 17 C -0.16 -2.05 6.02 -27.88 -0.17 -2.22 16 18 C 0.18 2.26 5.68 -4.04 -0.02 2.24 16 19 N -0.45 -5.63 3.63 -65.12 -0.24 -5.86 16 20 N -0.28 -3.01 12.53 29.87 0.37 -2.63 16 21 C 0.25 1.71 12.66 -89.12 -1.13 0.58 16 22 N -0.56 -4.72 3.14 -130.10 -0.41 -5.13 16 23 C 0.10 0.42 11.05 59.85 0.66 1.08 16 24 C 0.64 8.24 8.60 -86.73 -0.75 7.50 16 25 O -0.55 -8.87 17.72 5.08 0.09 -8.78 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.36 8.41 5.20 -40.82 -0.21 8.20 16 32 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 33 H 0.41 5.71 8.60 -40.82 -0.35 5.36 16 34 H 0.10 1.30 8.14 -51.92 -0.42 0.87 16 35 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.10 1.37 8.07 -51.93 -0.42 0.95 16 37 H 0.10 1.33 8.10 -51.93 -0.42 0.91 16 38 H 0.23 0.29 8.06 -52.49 -0.42 -0.14 16 39 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 40 H 0.09 0.09 8.14 -51.93 -0.42 -0.33 16 41 H 0.09 0.47 8.08 -51.93 -0.42 0.05 16 LS Contribution 353.99 15.07 5.33 5.33 Total: -1.00 -37.73 353.99 -6.89 -44.62 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -6.03 Total: 8.92 kcal Atomic # 6 Polarization: 14.51 SS G_CDS: -1.60 Total: 12.91 kcal Atomic # 7 Polarization: -70.77 SS G_CDS: -0.05 Total: -70.82 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: 0.18 Total: -18.45 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.71 Total: 17.48 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -37.73 -6.89 -44.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754277061.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.540 kcal (2) G-P(sol) polarization free energy of solvation -37.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds