Wall clock time and date at job start Fri Apr 10 2020 17:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86805 * 120.00300 * 2 1 4 4 H 1.48493 * 109.47281 * 240.00131 * 3 2 1 5 5 H 1.48501 * 109.46714 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46918 * 119.99923 * 3 2 1 7 7 C 1.38815 * 120.00058 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99957 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99907 * 359.97438 * 7 2 1 10 10 C 1.46502 * 119.99799 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46805 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.46526 * 65.00310 * 11 10 9 13 13 N 1.46496 * 109.47213 * 305.00247 * 11 10 9 14 14 C 1.34776 * 119.99846 * 154.99737 * 13 11 10 15 15 O 1.21282 * 119.99940 * 0.02562 * 14 13 11 16 16 C 1.50703 * 119.99978 * 180.02562 * 14 13 11 17 17 N 1.46906 * 109.47109 * 180.02562 * 16 14 13 18 18 C 1.47013 * 110.99679 * 293.63802 * 17 16 14 19 19 C 1.53102 * 109.25585 * 177.61181 * 18 17 16 20 20 O 1.43011 * 109.26258 * 56.84351 * 19 18 17 21 21 C 1.43017 * 113.73722 * 301.33198 * 20 19 18 22 22 C 1.47013 * 110.99743 * 169.99988 * 17 16 14 23 23 C 1.53001 * 109.46974 * 185.00099 * 11 10 9 24 24 C 1.52996 * 117.49911 * 248.75178 * 23 11 10 25 25 C 1.52995 * 117.49961 * 180.09018 * 23 11 10 26 26 H 0.96996 * 119.99510 * 359.97438 * 1 2 3 27 27 H 0.96995 * 119.99732 * 359.97438 * 9 7 2 28 28 H 1.09000 * 109.46759 * 60.00344 * 10 9 7 29 29 H 1.08999 * 109.47172 * 300.00244 * 10 9 7 30 30 H 0.97002 * 120.00387 * 335.00282 * 13 11 10 31 31 H 1.08992 * 109.46894 * 60.00096 * 16 14 13 32 32 H 1.09004 * 109.47113 * 300.00247 * 16 14 13 33 33 H 1.09000 * 109.50252 * 297.53423 * 18 17 16 34 34 H 1.08997 * 109.51401 * 57.66777 * 18 17 16 35 35 H 1.09007 * 109.50232 * 296.90658 * 19 18 17 36 36 H 1.09004 * 109.54160 * 176.80211 * 19 18 17 37 37 H 1.08998 * 109.50896 * 298.73695 * 21 20 19 38 38 H 1.08997 * 109.54338 * 178.62778 * 21 20 19 39 39 H 1.09001 * 109.50643 * 302.31994 * 22 17 16 40 40 H 1.08994 * 109.50970 * 62.41449 * 22 17 16 41 41 H 1.09000 * 115.54666 * 34.41822 * 23 11 10 42 42 H 1.08997 * 117.50181 * 359.97438 * 24 23 11 43 43 H 1.08998 * 117.49775 * 145.02317 * 24 23 11 44 44 H 1.09004 * 117.50211 * 214.98588 * 25 23 11 45 45 H 1.09001 * 117.49417 * 359.97438 * 25 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0017 11 6 1.0638 -4.8197 -0.0008 12 1 0.4966 -4.8134 -0.9316 13 7 0.1456 -4.6763 1.1317 14 6 -1.0789 -5.2371 1.0815 15 8 -1.4205 -5.8608 0.0991 16 6 -2.0237 -5.0891 2.2463 17 7 -3.2822 -5.7855 1.9475 18 6 -3.9962 -5.1317 0.8411 19 6 -5.2686 -5.9221 0.5242 20 8 -6.0705 -6.0183 1.7044 21 6 -5.4063 -6.6506 2.8018 22 6 -4.1354 -5.8675 3.1419 23 6 1.8248 -6.1412 0.1238 24 6 1.8330 -7.0691 -1.0927 25 6 1.0023 -7.4312 0.1410 26 1 -0.4849 0.8401 0.0004 27 1 0.3556 -2.3880 0.0002 28 1 2.6854 -3.7149 0.8878 29 1 2.6841 -3.7141 -0.8921 30 1 0.4189 -4.1777 1.9176 31 1 -2.2251 -4.0319 2.4186 32 1 -1.5717 -5.5230 3.1382 33 1 -4.2621 -4.1148 1.1300 34 1 -3.3554 -5.1046 -0.0402 35 1 -5.0003 -6.9224 0.1838 36 1 -5.8306 -5.4104 -0.2571 37 1 -5.1420 -7.6719 2.5278 38 1 -6.0673 -6.6657 3.6683 39 1 -3.5961 -6.3777 3.9400 40 1 -4.4027 -4.8624 3.4680 41 1 2.7242 -6.1096 0.7387 42 1 1.2959 -6.7383 -1.9816 43 1 2.7376 -7.6482 -1.2778 44 1 1.3607 -8.2484 0.7670 45 1 -0.0810 -7.3383 0.0639 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754441142.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:44:28 Heat of formation + Delta-G solvation = -53.410626 kcal Electronic energy + Delta-G solvation = -25002.669402 eV Core-core repulsion = 21441.722604 eV Total energy + Delta-G solvation = -3560.946798 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.30226 -40.20335 -38.43298 -36.61251 -36.38607 -34.93923 -33.03598 -32.12085 -30.67324 -29.23218 -26.27755 -25.55725 -24.99083 -23.28813 -23.03933 -21.83959 -21.32966 -21.22497 -19.26128 -18.09245 -17.71733 -17.12461 -17.04254 -16.71377 -16.67398 -16.14517 -15.97060 -15.73291 -15.58107 -15.14356 -14.96997 -14.79504 -14.46939 -14.19092 -13.77940 -13.21453 -13.17900 -13.04383 -12.76545 -12.72064 -12.48725 -12.37954 -12.26879 -12.20930 -12.12064 -11.85675 -11.56146 -11.22345 -11.07203 -10.98010 -10.86641 -10.47252 -9.87487 -9.42696 -9.02531 -7.95693 -5.25111 1.47977 1.50328 1.56395 1.71370 2.05856 2.55124 2.77152 2.95618 3.09222 3.38946 3.59563 3.78729 3.94040 3.98780 3.99426 4.12245 4.14056 4.18924 4.20828 4.28365 4.37726 4.39916 4.45444 4.48658 4.61266 4.65537 4.73997 4.81875 4.84901 4.88164 4.92443 5.00036 5.07274 5.13049 5.30754 5.42830 5.49355 5.63603 5.74818 5.91500 6.16541 6.24959 6.67484 7.32720 7.36786 8.05732 8.30014 9.27150 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.012521 B = 0.004269 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.714192 B = 6556.609441 C = 8263.937175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.071 4.071 3 Si 0.972 3.028 4 H -0.280 1.280 5 H -0.298 1.298 6 H -0.275 1.275 7 C -0.246 4.246 8 H 0.078 0.922 9 N -0.742 5.742 10 C 0.150 3.850 11 C 0.182 3.818 12 H 0.056 0.944 13 N -0.706 5.706 14 C 0.515 3.485 15 O -0.557 6.557 16 C 0.039 3.961 17 N -0.525 5.525 18 C 0.015 3.985 19 C 0.072 3.928 20 O -0.404 6.404 21 C 0.061 3.939 22 C 0.016 3.984 23 C -0.164 4.164 24 C -0.168 4.168 25 C -0.178 4.178 26 H 0.250 0.750 27 H 0.374 0.626 28 H 0.041 0.959 29 H 0.034 0.966 30 H 0.408 0.592 31 H 0.065 0.935 32 H 0.133 0.867 33 H 0.028 0.972 34 H 0.082 0.918 35 H 0.059 0.941 36 H 0.106 0.894 37 H 0.062 0.938 38 H 0.122 0.878 39 H 0.111 0.889 40 H 0.040 0.960 41 H 0.120 0.880 42 H 0.079 0.921 43 H 0.114 0.886 44 H 0.102 0.898 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.434 -16.126 7.551 18.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.263 4.263 3 Si 0.801 3.199 4 H -0.207 1.207 5 H -0.225 1.225 6 H -0.201 1.201 7 C -0.378 4.378 8 H 0.096 0.904 9 N -0.385 5.385 10 C 0.023 3.977 11 C 0.077 3.923 12 H 0.074 0.926 13 N -0.357 5.357 14 C 0.302 3.698 15 O -0.436 6.436 16 C -0.092 4.092 17 N -0.251 5.251 18 C -0.113 4.113 19 C -0.004 4.004 20 O -0.323 6.323 21 C -0.015 4.015 22 C -0.112 4.112 23 C -0.183 4.183 24 C -0.205 4.205 25 C -0.214 4.214 26 H 0.059 0.941 27 H 0.206 0.794 28 H 0.058 0.942 29 H 0.052 0.948 30 H 0.243 0.757 31 H 0.082 0.918 32 H 0.151 0.849 33 H 0.046 0.954 34 H 0.100 0.900 35 H 0.078 0.922 36 H 0.124 0.876 37 H 0.080 0.920 38 H 0.140 0.860 39 H 0.129 0.871 40 H 0.059 0.941 41 H 0.138 0.862 42 H 0.098 0.902 43 H 0.132 0.868 44 H 0.120 0.880 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.592 -16.866 6.719 18.727 hybrid contribution 0.310 2.272 0.242 2.306 sum -4.283 -14.594 6.961 16.727 Atomic orbital electron populations 1.69815 1.06647 1.26057 1.59384 1.25523 0.96269 1.00987 1.03560 0.85236 0.77182 0.79237 0.78227 1.20655 1.22469 1.20070 1.19602 0.91595 0.85147 1.41408 0.90362 1.42496 1.05613 1.00881 1.89536 1.21036 0.93411 0.83933 0.99275 1.20477 0.89522 0.93138 0.89162 0.92606 1.45902 1.14677 1.54640 1.20493 1.20772 0.82180 0.77944 0.88872 1.90560 1.76120 1.42128 1.34782 1.22007 0.90594 0.99170 0.97402 1.61922 1.03924 1.52036 1.07215 1.22853 0.96679 0.95592 0.96188 1.22612 0.90245 0.99984 0.87604 1.87942 1.40977 1.80998 1.22404 1.22850 0.93035 0.95616 0.90016 1.22946 0.95027 1.00623 0.92556 1.22553 1.01797 0.90176 1.03797 1.22968 1.02709 1.02813 0.92013 1.23183 0.99502 0.97501 1.01261 0.94126 0.79389 0.94153 0.94833 0.75704 0.91752 0.84931 0.95414 0.89967 0.92238 0.87564 0.91986 0.85989 0.87076 0.94141 0.86235 0.90206 0.86812 0.87983 0.88624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.32 13.06 21.65 0.28 -58.04 16 2 C -0.07 -3.98 5.50 84.86 0.47 -3.51 16 3 Si 0.97 45.17 29.55 68.60 2.03 47.20 16 4 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 5 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 6 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 7 C -0.25 -13.28 9.99 84.03 0.84 -12.44 16 8 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 9 N -0.74 -36.20 5.43 -343.43 -1.87 -38.07 16 10 C 0.15 5.66 5.80 86.38 0.50 6.17 16 11 C 0.18 5.99 2.43 44.99 0.11 6.10 16 12 H 0.06 2.19 7.34 -2.39 -0.02 2.17 16 13 N -0.71 -21.53 4.50 -442.53 -1.99 -23.52 16 14 C 0.52 15.93 6.87 87.66 0.60 16.54 16 15 O -0.56 -20.30 11.37 -3.04 -0.03 -20.33 16 16 C 0.04 0.96 5.45 85.56 0.47 1.43 16 17 N -0.53 -13.21 4.46 -899.76 -4.01 -17.22 16 18 C 0.02 0.43 5.29 86.32 0.46 0.89 16 19 C 0.07 1.78 7.01 72.02 0.50 2.28 16 20 O -0.40 -9.89 10.83 -148.98 -1.61 -11.50 16 21 C 0.06 1.12 7.01 72.02 0.50 1.62 16 22 C 0.02 0.30 5.65 86.32 0.49 0.79 16 23 C -0.16 -4.35 5.36 -10.80 -0.06 -4.41 16 24 C -0.17 -4.18 10.18 30.62 0.31 -3.87 16 25 C -0.18 -4.61 9.74 30.62 0.30 -4.31 16 26 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 27 H 0.37 19.79 7.33 -92.71 -0.68 19.11 16 28 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.41 11.63 8.60 -92.71 -0.80 10.83 16 31 H 0.06 1.66 8.12 -2.39 -0.02 1.64 16 32 H 0.13 2.41 8.04 -2.38 -0.02 2.39 16 33 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.08 2.77 5.88 -2.39 -0.01 2.76 16 35 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 36 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 37 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.12 1.56 8.14 -2.39 -0.02 1.55 16 39 H 0.11 1.54 8.09 -2.39 -0.02 1.52 16 40 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.12 2.80 8.11 -2.39 -0.02 2.78 16 42 H 0.08 2.22 8.05 -2.39 -0.02 2.20 16 43 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 44 H 0.10 2.23 8.14 -2.38 -0.02 2.21 16 45 H 0.10 3.04 5.02 -2.39 -0.01 3.03 16 Total: -1.00 -67.32 358.93 -2.20 -69.52 By element: Atomic # 1 Polarization: 45.18 SS G_CDS: -0.48 Total: 44.69 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: 5.49 Total: 7.27 kcal Atomic # 7 Polarization: -129.26 SS G_CDS: -7.59 Total: -136.85 kcal Atomic # 8 Polarization: -30.19 SS G_CDS: -1.65 Total: -31.83 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -67.32 -2.20 -69.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754441142.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.112 kcal (2) G-P(sol) polarization free energy of solvation -67.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds