Wall clock time and date at job start Fri Apr 10 2020 17:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.36595 * 126.57732 * 2 1 4 4 C 1.47523 * 125.77378 * 359.97438 * 3 2 1 5 5 O 1.21597 * 119.99780 * 354.26976 * 4 3 2 6 6 N 1.34777 * 120.00371 * 174.26283 * 4 3 2 7 7 C 1.46498 * 119.99984 * 184.30480 * 6 4 3 8 8 C 1.46507 * 119.99600 * 4.31160 * 6 4 3 9 9 C 1.53002 * 109.46980 * 83.59334 * 8 6 4 10 10 H 1.08993 * 109.47388 * 304.99764 * 9 8 6 11 11 O 1.42894 * 109.47095 * 65.00153 * 9 8 6 12 12 C 1.53001 * 109.46827 * 184.99559 * 9 8 6 13 13 N 1.46492 * 109.47209 * 180.02562 * 12 9 8 14 14 C 1.36936 * 120.00146 * 179.72798 * 13 12 9 15 15 H 1.08006 * 120.00265 * 0.27146 * 14 13 12 16 16 C 1.38810 * 120.00226 * 180.27724 * 14 13 12 17 17 N 1.31620 * 120.00269 * 179.97438 * 16 14 13 18 18 Si 1.86802 * 119.99977 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.47181 * 90.00020 * 18 16 14 20 20 H 1.48501 * 109.47344 * 210.00595 * 18 16 14 21 21 H 1.48499 * 109.47030 * 330.00239 * 18 16 14 22 22 N 1.34407 * 108.45735 * 180.23886 * 3 2 1 23 23 N 1.28762 * 109.52207 * 359.59068 * 22 3 2 24 24 N 1.34812 * 126.58325 * 179.97438 * 2 1 3 25 25 C 1.46504 * 126.59516 * 0.02562 * 24 2 1 26 26 H 1.09003 * 109.47188 * 90.00057 * 1 2 3 27 27 H 1.09004 * 109.47315 * 209.99557 * 1 2 3 28 28 H 1.08996 * 109.47386 * 330.00276 * 1 2 3 29 29 H 1.09000 * 109.47362 * 275.05625 * 7 6 4 30 30 H 1.08997 * 109.46962 * 35.06228 * 7 6 4 31 31 H 1.09003 * 109.46548 * 155.05637 * 7 6 4 32 32 H 1.09001 * 109.46887 * 323.58966 * 8 6 4 33 33 H 1.08999 * 109.46369 * 203.59033 * 8 6 4 34 34 H 0.96704 * 114.00833 * 59.99600 * 11 9 8 35 35 H 1.09003 * 109.46852 * 59.99932 * 12 9 8 36 36 H 1.09007 * 109.47414 * 300.00338 * 12 9 8 37 37 H 0.96999 * 120.00288 * 359.97438 * 13 12 9 38 38 H 0.97003 * 120.00374 * 179.97438 * 17 16 14 39 39 H 1.08992 * 109.47555 * 89.99368 * 25 24 2 40 40 H 1.09003 * 109.46951 * 210.00208 * 25 24 2 41 41 H 1.09006 * 109.46492 * 329.99395 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3209 1.0969 0.0000 4 6 1.8737 2.5027 -0.0005 5 8 0.6909 2.7643 -0.1062 6 7 2.7759 3.4971 0.1162 7 6 2.3252 4.8878 0.2106 8 6 4.2075 3.1871 0.1485 9 6 4.7294 3.0380 -1.2820 10 1 4.1351 2.2922 -1.8097 11 8 4.6295 4.2926 -1.9586 12 6 6.1927 2.5926 -1.2470 13 7 6.6928 2.4505 -2.6166 14 6 7.9880 2.0639 -2.8360 15 1 8.6397 1.8596 -1.9993 16 6 8.4635 1.9348 -4.1337 17 7 9.7085 1.5637 -4.3446 18 14 7.3362 2.2876 -5.5809 19 1 7.4395 3.7222 -5.9505 20 1 7.7384 1.4480 -6.7379 21 1 5.9345 1.9731 -5.2047 22 7 3.5983 0.6789 -0.0053 23 7 3.6299 -0.6083 0.0001 24 7 2.3104 -1.0825 0.0005 25 6 1.8864 -2.4849 0.0006 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3634 0.8900 0.5138 29 1 2.1683 5.2877 -0.7912 30 1 1.3902 4.9296 0.7691 31 1 3.0820 5.4809 0.7242 32 1 4.3652 2.2554 0.6919 33 1 4.7427 3.9944 0.6484 34 1 5.1347 5.0050 -1.5433 35 1 6.2690 1.6356 -0.7308 36 1 6.7871 3.3385 -0.7192 37 1 6.1074 2.6336 -3.3681 38 1 10.0407 1.4731 -5.2514 39 1 1.7815 -2.8329 -1.0270 40 1 2.6330 -3.0901 0.5148 41 1 0.9292 -2.5749 0.5142 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755775460.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:44:34 Heat of formation + Delta-G solvation = 12.114121 kcal Electronic energy + Delta-G solvation = -24945.505436 eV Core-core repulsion = 21283.859661 eV Total energy + Delta-G solvation = -3661.645775 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.159 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.35246 -40.71547 -38.97958 -36.58458 -35.98904 -35.59487 -33.48592 -33.33423 -31.15269 -29.71670 -28.34128 -27.79311 -26.90819 -24.46747 -23.77613 -22.78252 -22.09130 -20.70882 -19.80078 -18.67477 -17.63657 -17.51471 -17.20566 -16.74205 -16.57407 -16.40203 -16.25012 -15.41986 -15.22210 -15.00354 -14.77827 -14.43835 -14.31870 -14.15517 -13.97579 -13.84975 -13.64662 -13.33378 -13.27106 -13.17431 -12.99967 -12.84170 -12.55626 -12.29262 -11.99522 -11.86008 -11.76571 -11.23111 -11.13284 -11.06937 -11.02156 -10.24071 -9.55852 -9.29658 -8.04333 -5.35850 0.11565 0.58702 1.15652 1.34958 1.36492 1.44295 1.94504 2.14875 2.45814 3.08321 3.26901 3.33183 3.47695 3.61903 3.68580 3.71622 3.98295 4.16252 4.21187 4.29900 4.37400 4.48007 4.52991 4.59891 4.63274 4.65472 4.71944 4.81396 4.95451 4.98677 5.01735 5.12584 5.21629 5.49241 5.56004 5.73844 6.18037 6.21661 6.82208 6.89756 7.06677 7.07601 7.84222 8.02740 9.17396 Molecular weight = 297.16amu Principal moments of inertia in cm(-1) A = 0.014654 B = 0.004838 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.335690 B = 5786.621011 C = 6906.201101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.129 3.871 3 C -0.140 4.140 4 C 0.598 3.402 5 O -0.559 6.559 6 N -0.593 5.593 7 C 0.089 3.911 8 C 0.084 3.916 9 C 0.109 3.891 10 H 0.067 0.933 11 O -0.569 6.569 12 C 0.132 3.868 13 N -0.754 5.754 14 C -0.230 4.230 15 H 0.061 0.939 16 C -0.059 4.059 17 N -0.982 5.982 18 Si 0.953 3.047 19 H -0.276 1.276 20 H -0.292 1.292 21 H -0.269 1.269 22 N -0.216 5.216 23 N -0.101 5.101 24 N -0.354 5.354 25 C 0.072 3.928 26 H 0.100 0.900 27 H 0.114 0.886 28 H 0.096 0.904 29 H 0.053 0.947 30 H 0.072 0.928 31 H 0.101 0.899 32 H 0.110 0.890 33 H 0.114 0.886 34 H 0.386 0.614 35 H 0.034 0.966 36 H 0.042 0.958 37 H 0.363 0.637 38 H 0.258 0.742 39 H 0.102 0.898 40 H 0.108 0.892 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.085 -2.706 14.468 28.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.011 4.011 3 C -0.279 4.279 4 C 0.385 3.615 5 O -0.438 6.438 6 N -0.322 5.322 7 C -0.052 4.052 8 C -0.041 4.041 9 C 0.048 3.952 10 H 0.085 0.915 11 O -0.376 6.376 12 C 0.005 3.995 13 N -0.400 5.400 14 C -0.361 4.361 15 H 0.079 0.921 16 C -0.251 4.251 17 N -0.633 5.633 18 Si 0.781 3.219 19 H -0.202 1.202 20 H -0.219 1.219 21 H -0.195 1.195 22 N -0.089 5.089 23 N -0.080 5.080 24 N -0.139 5.139 25 C -0.067 4.067 26 H 0.118 0.882 27 H 0.132 0.868 28 H 0.115 0.885 29 H 0.071 0.929 30 H 0.090 0.910 31 H 0.120 0.880 32 H 0.127 0.873 33 H 0.132 0.868 34 H 0.235 0.765 35 H 0.052 0.948 36 H 0.060 0.940 37 H 0.196 0.804 38 H 0.067 0.933 39 H 0.121 0.879 40 H 0.127 0.873 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -23.391 -3.418 14.112 27.531 hybrid contribution -0.351 0.335 -0.913 1.034 sum -23.742 -3.083 13.199 27.339 Atomic orbital electron populations 1.20798 0.81995 1.06346 1.05483 1.22402 0.97549 0.85725 0.95384 1.21416 0.89621 0.95992 1.20919 1.16932 0.85143 0.83157 0.76222 1.90714 1.16690 1.83947 1.52474 1.47570 1.06514 1.07401 1.70754 1.21830 1.01657 0.79476 1.02256 1.22607 0.79658 1.05273 0.96525 1.22166 0.94348 0.85419 0.93272 0.91509 1.86545 1.74114 1.20049 1.56911 1.21340 0.93181 0.99061 0.85907 1.42619 1.10190 1.83474 1.03680 1.19080 0.87857 1.36173 0.92957 0.92086 1.25376 0.97495 1.02441 0.99747 1.69865 1.16415 1.56215 1.20772 0.85445 0.78896 0.77978 0.79588 1.20161 1.21867 1.19476 1.74729 1.19337 1.04305 1.10498 1.82038 0.97985 1.03797 1.24171 1.50648 1.05287 1.09438 1.48542 1.22702 1.04238 0.73367 1.06360 0.88179 0.86778 0.88530 0.92865 0.90957 0.88023 0.87264 0.86757 0.76471 0.94838 0.94020 0.80387 0.93294 0.87925 0.87306 0.84856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.12 9.51 71.23 0.68 -0.44 16 2 C 0.13 2.76 7.02 41.72 0.29 3.05 16 3 C -0.14 -3.95 6.51 40.82 0.27 -3.69 16 4 C 0.60 17.28 7.61 86.69 0.66 17.94 16 5 O -0.56 -17.10 14.50 -4.02 -0.06 -17.16 16 6 N -0.59 -15.06 2.84 -850.54 -2.41 -17.47 16 7 C 0.09 1.74 10.38 127.77 1.33 3.07 16 8 C 0.08 2.13 4.67 86.38 0.40 2.53 16 9 C 0.11 3.60 2.70 30.60 0.08 3.68 16 10 H 0.07 2.64 7.25 -2.39 -0.02 2.62 16 11 O -0.57 -18.19 13.03 -148.98 -1.94 -20.13 16 12 C 0.13 5.29 5.92 86.38 0.51 5.80 16 13 N -0.75 -38.26 5.30 -343.45 -1.82 -40.08 16 14 C -0.23 -13.81 10.47 84.03 0.88 -12.93 16 15 H 0.06 3.95 8.06 -2.91 -0.02 3.92 16 16 C -0.06 -3.65 5.50 84.86 0.47 -3.18 16 17 N -0.98 -64.90 13.97 21.65 0.30 -64.60 16 18 Si 0.95 49.10 27.74 68.60 1.90 51.00 16 19 H -0.28 -13.75 7.11 99.48 0.71 -13.05 16 20 H -0.29 -14.93 7.11 99.48 0.71 -14.22 16 21 H -0.27 -13.33 6.52 99.48 0.65 -12.68 16 22 N -0.22 -6.84 7.68 -49.99 -0.38 -7.22 16 23 N -0.10 -3.05 13.78 37.02 0.51 -2.54 16 24 N -0.35 -7.26 4.03 -355.09 -1.43 -8.69 16 25 C 0.07 0.59 11.33 127.77 1.45 2.04 16 26 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.11 0.51 7.18 -2.39 -0.02 0.49 16 28 H 0.10 1.55 6.57 -2.39 -0.02 1.54 16 29 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.07 1.39 7.64 -2.39 -0.02 1.37 16 31 H 0.10 1.35 7.78 -2.39 -0.02 1.33 16 32 H 0.11 3.04 5.26 -2.39 -0.01 3.03 16 33 H 0.11 2.14 7.78 -2.39 -0.02 2.13 16 34 H 0.39 9.21 9.05 -74.05 -0.67 8.54 16 35 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 37 H 0.36 18.52 5.40 -92.71 -0.50 18.02 16 38 H 0.26 16.22 8.31 -92.71 -0.77 15.44 16 39 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.13 0.07 7.16 -2.38 -0.02 0.06 16 Total: -1.00 -85.37 341.52 1.53 -83.84 By element: Atomic # 1 Polarization: 25.32 SS G_CDS: -0.15 Total: 25.17 kcal Atomic # 6 Polarization: 10.86 SS G_CDS: 7.01 Total: 17.87 kcal Atomic # 7 Polarization: -135.36 SS G_CDS: -5.23 Total: -140.60 kcal Atomic # 8 Polarization: -35.29 SS G_CDS: -2.00 Total: -37.29 kcal Atomic # 14 Polarization: 49.10 SS G_CDS: 1.90 Total: 51.00 kcal Total: -85.37 1.53 -83.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755775460.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.958 kcal (2) G-P(sol) polarization free energy of solvation -85.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds