Wall clock time and date at job start Fri Apr 10 2020 17:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21279 * 120.00041 * 2 1 4 4 N 1.34774 * 119.99627 * 179.97438 * 2 1 3 5 5 C 1.46508 * 119.99641 * 180.02562 * 4 2 1 6 6 H 1.08991 * 109.46953 * 35.00059 * 5 4 2 7 7 C 1.53001 * 109.46934 * 275.00036 * 5 4 2 8 8 C 1.50705 * 109.46911 * 155.00142 * 5 4 2 9 9 O 1.21280 * 119.99923 * 23.25039 * 8 5 4 10 10 N 1.34774 * 119.99712 * 203.24942 * 8 5 4 11 11 C 1.47029 * 125.64920 * 354.88889 * 10 8 5 12 12 C 1.54322 * 107.26873 * 178.98994 * 11 10 8 13 13 C 1.55157 * 102.94406 * 337.80788 * 12 11 10 14 14 H 1.09005 * 111.00198 * 277.43087 * 13 12 11 15 15 C 1.52998 * 111.00552 * 153.61797 * 13 12 11 16 16 C 1.53001 * 109.47409 * 69.57758 * 15 13 12 17 17 N 1.46498 * 109.47200 * 180.02562 * 16 15 13 18 18 C 1.36942 * 119.99714 * 180.02562 * 17 16 15 19 19 H 1.07997 * 119.99965 * 0.02562 * 18 17 16 20 20 C 1.38811 * 119.99428 * 180.02562 * 18 17 16 21 21 N 1.31617 * 120.00343 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99594 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47263 * 59.99658 * 22 20 18 24 24 H 1.48497 * 109.47083 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47241 * 299.99745 * 22 20 18 26 26 C 1.47422 * 125.64606 * 174.95003 * 10 8 5 27 27 H 1.09007 * 109.47494 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47632 * 299.99857 * 1 2 3 29 29 H 1.09002 * 109.47468 * 60.00297 * 1 2 3 30 30 H 0.97000 * 120.00596 * 359.97438 * 4 2 1 31 31 H 1.09005 * 109.47243 * 305.74990 * 7 5 4 32 32 H 1.08999 * 109.47153 * 65.75227 * 7 5 4 33 33 H 1.09004 * 109.46673 * 185.75003 * 7 5 4 34 34 H 1.08999 * 109.88058 * 59.57402 * 11 10 8 35 35 H 1.09004 * 110.00766 * 298.47976 * 11 10 8 36 36 H 1.09006 * 110.71828 * 219.44267 * 12 11 10 37 37 H 1.09001 * 110.72077 * 96.17270 * 12 11 10 38 38 H 1.09000 * 109.47501 * 189.58424 * 15 13 12 39 39 H 1.09006 * 109.47135 * 309.57986 * 15 13 12 40 40 H 1.09001 * 109.46959 * 300.00377 * 16 15 13 41 41 H 1.08997 * 109.46594 * 60.00073 * 16 15 13 42 42 H 0.97001 * 120.00142 * 0.02562 * 17 16 15 43 43 H 0.97001 * 119.99788 * 180.02562 * 21 20 18 44 44 H 1.08994 * 110.37038 * 85.24092 * 26 10 8 45 45 H 1.09002 * 110.36697 * 322.91394 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6459 -1.1672 0.0011 6 1 4.0089 -0.3254 0.5904 7 6 4.1564 -1.0418 -1.4358 8 6 4.1479 -2.4549 0.6020 9 8 3.4402 -3.4397 0.6037 10 7 5.3834 -2.5119 1.1375 11 6 6.3806 -1.4318 1.1085 12 6 7.6275 -1.9391 1.8632 13 6 7.0545 -3.0655 2.7633 14 1 6.6198 -2.6545 3.6745 15 6 8.1284 -4.1046 3.0918 16 6 9.1659 -3.4863 4.0312 17 7 10.1945 -4.4811 4.3452 18 6 11.2335 -4.1531 5.1748 19 1 11.2944 -3.1613 5.5978 20 6 12.2083 -5.0956 5.4720 21 7 12.1344 -6.3041 4.9560 22 14 13.6253 -4.6484 6.6042 23 1 13.0918 -4.2530 7.9324 24 1 14.5227 -5.8212 6.7609 25 1 14.3875 -3.5159 6.0197 26 6 5.9592 -3.6680 1.8483 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.6958 -2.0073 0.0013 31 1 3.7116 -1.8255 -2.0491 32 1 3.8797 -0.0664 -1.8358 33 1 5.2416 -1.1442 -1.4460 34 1 5.9823 -0.5462 1.6037 35 1 6.6426 -1.1937 0.0775 36 1 8.0612 -1.1439 2.4696 37 1 8.3638 -2.3393 1.1662 38 1 7.6659 -4.9643 3.5767 39 1 8.6169 -4.4256 2.1718 40 1 9.6284 -2.6266 3.5463 41 1 8.6774 -3.1653 4.9511 42 1 10.1396 -5.3720 3.9656 43 1 12.8154 -6.9628 5.1640 44 1 6.4004 -4.3681 1.1389 45 1 5.1954 -4.1641 2.4470 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672730938.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:43:44 Heat of formation + Delta-G solvation = -71.217784 kcal Electronic energy + Delta-G solvation = -23774.954254 eV Core-core repulsion = 20213.235279 eV Total energy + Delta-G solvation = -3561.718974 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.84226 -39.65265 -38.03882 -35.31084 -35.21198 -33.16838 -31.91550 -30.85853 -29.67086 -29.26183 -27.52436 -25.10972 -23.61672 -22.92905 -21.57601 -20.84321 -20.22392 -19.66710 -17.97817 -17.16007 -16.94660 -16.59823 -16.11756 -15.63387 -15.14309 -14.84108 -14.69505 -14.27058 -14.04963 -13.73549 -13.53415 -13.34520 -13.18182 -13.10758 -12.97590 -12.66850 -12.58866 -12.44877 -12.22540 -11.98934 -11.69378 -11.34075 -11.08762 -10.82087 -10.69170 -10.52483 -10.36535 -10.33088 -10.19243 -10.04193 -9.70170 -9.55650 -8.92168 -8.87033 -6.92860 -5.76969 -3.05854 2.12361 2.28268 2.44101 3.01675 3.43650 3.47867 3.49085 3.98259 4.39282 4.44448 4.53034 4.60650 4.64578 4.68885 4.78973 4.79447 5.00276 5.01953 5.13760 5.22766 5.33022 5.34296 5.42755 5.51578 5.57211 5.61121 5.71722 5.73244 5.78470 5.84056 5.92945 6.02571 6.06610 6.21610 6.33870 6.35458 6.81679 6.86314 7.09482 7.17732 7.68597 7.73572 7.81605 8.42143 9.52911 10.11407 10.45512 11.45882 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.040822 B = 0.002203 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.738125 B =12706.899877 C =12907.722954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.514 3.486 3 O -0.548 6.548 4 N -0.715 5.715 5 C 0.127 3.873 6 H 0.110 0.890 7 C -0.157 4.157 8 C 0.527 3.473 9 O -0.540 6.540 10 N -0.611 5.611 11 C 0.093 3.907 12 C -0.127 4.127 13 C -0.094 4.094 14 H 0.086 0.914 15 C -0.115 4.115 16 C 0.155 3.845 17 N -0.735 5.735 18 C -0.240 4.240 19 H 0.070 0.930 20 C -0.015 4.015 21 N -0.934 5.934 22 Si 0.908 3.092 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C 0.110 3.890 27 H 0.077 0.923 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.411 0.589 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.020 0.980 41 H 0.017 0.983 42 H 0.383 0.617 43 H 0.256 0.744 44 H 0.073 0.927 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.575 11.437 -12.977 27.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.301 3.699 3 O -0.425 6.425 4 N -0.370 5.370 5 C 0.019 3.981 6 H 0.128 0.872 7 C -0.216 4.216 8 C 0.314 3.686 9 O -0.418 6.418 10 N -0.345 5.345 11 C -0.029 4.029 12 C -0.165 4.165 13 C -0.114 4.114 14 H 0.104 0.896 15 C -0.154 4.154 16 C 0.027 3.973 17 N -0.379 5.379 18 C -0.372 4.372 19 H 0.088 0.912 20 C -0.211 4.211 21 N -0.583 5.583 22 Si 0.739 3.261 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.012 4.012 27 H 0.096 0.904 28 H 0.115 0.885 29 H 0.115 0.885 30 H 0.248 0.752 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.106 0.894 37 H 0.101 0.899 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.037 0.963 41 H 0.035 0.965 42 H 0.217 0.783 43 H 0.065 0.935 44 H 0.091 0.909 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -21.486 11.753 -12.900 27.680 hybrid contribution 0.668 -0.515 0.538 1.000 sum -20.818 11.238 -12.363 26.693 Atomic orbital electron populations 1.21839 0.91122 1.04508 1.05457 1.20871 0.90782 0.83109 0.75101 1.90731 1.70694 1.31323 1.49775 1.45995 1.05765 1.09852 1.75437 1.20737 0.82112 0.96593 0.98702 0.87237 1.22092 1.01860 1.03647 0.93999 1.20194 0.80532 0.89903 0.77983 1.90700 1.55957 1.37068 1.58033 1.48463 1.13350 1.17123 1.55537 1.22255 0.89187 0.90273 1.01214 1.22754 0.95878 0.99144 0.98685 1.22350 0.95202 0.96171 0.97665 0.89612 1.21669 0.95550 0.97442 1.00703 1.20619 0.89148 0.92652 0.94857 1.42368 1.25834 1.12160 1.57529 1.19186 1.00563 0.97048 1.20366 0.91249 1.24757 0.99341 0.95968 1.01034 1.69650 1.36346 1.03921 1.48339 0.86253 0.82216 0.77000 0.80631 1.21272 1.21676 1.21260 1.22407 0.95921 0.88175 0.94713 0.90355 0.88510 0.88550 0.75178 0.91509 0.90619 0.90883 0.91060 0.90971 0.89368 0.89885 0.91483 0.91516 0.96264 0.96529 0.78308 0.93456 0.90859 0.90305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.82 10.39 36.01 0.37 -0.45 16 2 C 0.51 4.58 7.90 -10.99 -0.09 4.50 16 3 O -0.55 -7.00 16.76 5.56 0.09 -6.90 16 4 N -0.72 -6.12 5.05 -54.93 -0.28 -6.40 16 5 C 0.13 1.18 2.40 -69.07 -0.17 1.01 16 6 H 0.11 1.06 6.79 -51.93 -0.35 0.70 16 7 C -0.16 -1.24 9.47 37.16 0.35 -0.89 16 8 C 0.53 5.97 7.07 -10.98 -0.08 5.89 16 9 O -0.54 -7.63 16.27 5.56 0.09 -7.54 16 10 N -0.61 -6.49 3.33 -170.51 -0.57 -7.06 16 11 C 0.09 0.79 6.26 -3.06 -0.02 0.78 16 12 C -0.13 -1.24 5.74 -24.90 -0.14 -1.38 16 13 C -0.09 -1.08 3.04 -88.47 -0.27 -1.35 16 14 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 15 C -0.12 -1.71 4.84 -26.73 -0.13 -1.83 16 16 C 0.15 2.97 6.14 -4.04 -0.02 2.94 16 17 N -0.73 -18.51 5.60 -59.91 -0.34 -18.85 16 18 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 19 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 20 C -0.02 -0.43 5.50 -17.43 -0.10 -0.53 16 21 N -0.93 -28.28 13.06 55.49 0.72 -27.56 16 22 Si 0.91 22.37 29.55 -169.99 -5.02 17.35 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 26 C 0.11 1.25 6.36 -2.53 -0.02 1.24 16 27 H 0.08 0.23 7.92 -51.92 -0.41 -0.18 16 28 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.41 3.14 7.60 -40.82 -0.31 2.83 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.50 6.84 -51.93 -0.36 0.15 16 34 H 0.07 0.54 7.72 -51.93 -0.40 0.14 16 35 H 0.07 0.51 6.93 -51.93 -0.36 0.15 16 36 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.08 0.84 7.97 -51.93 -0.41 0.42 16 38 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.07 1.00 8.04 -51.93 -0.42 0.58 16 40 H 0.02 0.37 7.63 -51.93 -0.40 -0.03 16 41 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.38 10.14 7.67 -40.82 -0.31 9.83 16 43 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 44 H 0.07 0.85 8.04 -51.93 -0.42 0.43 16 45 H 0.08 0.96 8.09 -51.93 -0.42 0.54 16 LS Contribution 368.54 15.07 5.55 5.55 Total: -1.00 -34.60 368.54 -7.69 -42.28 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -7.50 Total: 6.08 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: -0.45 Total: 3.04 kcal Atomic # 7 Polarization: -59.41 SS G_CDS: -0.46 Total: -59.86 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: 0.18 Total: -14.44 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.60 -7.69 -42.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672730938.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.933 kcal (2) G-P(sol) polarization free energy of solvation -34.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds