Wall clock time and date at job start Fri Apr 10 2020 17:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21280 * 120.00028 * 2 1 4 4 N 1.34773 * 119.99853 * 179.97438 * 2 1 3 5 5 C 1.46506 * 119.99858 * 179.97438 * 4 2 1 6 6 C 1.52999 * 109.46865 * 179.97438 * 5 4 2 7 7 C 1.53007 * 109.46899 * 179.97438 * 6 5 4 8 8 C 1.53119 * 109.52018 * 185.00022 * 7 6 5 9 9 C 1.53039 * 109.27478 * 182.37728 * 8 7 6 10 10 N 1.46852 * 109.52336 * 59.18093 * 9 8 7 11 11 C 1.46900 * 111.00118 * 174.15791 * 10 9 8 12 12 C 1.50697 * 109.47237 * 293.61170 * 11 10 9 13 13 O 1.21294 * 119.99957 * 353.73088 * 12 11 10 14 14 N 1.34777 * 120.00218 * 173.72893 * 12 11 10 15 15 C 1.37099 * 120.00043 * 179.97438 * 14 12 11 16 16 H 1.07997 * 119.99929 * 0.02562 * 15 14 12 17 17 C 1.38955 * 119.99738 * 180.02562 * 15 14 12 18 18 N 1.31409 * 119.99982 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 120.00043 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47177 * 89.99772 * 19 17 15 21 21 H 1.48502 * 109.47005 * 210.00103 * 19 17 15 22 22 H 1.48502 * 109.47199 * 329.99788 * 19 17 15 23 23 C 1.46845 * 111.19897 * 298.25829 * 10 9 8 24 24 C 1.53038 * 109.52423 * 61.74130 * 23 10 9 25 25 H 1.09001 * 109.46920 * 239.99766 * 1 2 3 26 26 H 1.08999 * 109.47018 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.46857 * 119.99976 * 1 2 3 28 28 H 0.97002 * 120.00507 * 0.02562 * 4 2 1 29 29 H 1.09001 * 109.46778 * 60.00211 * 5 4 2 30 30 H 1.09000 * 109.47209 * 299.99919 * 5 4 2 31 31 H 1.09001 * 109.47218 * 60.00520 * 6 5 4 32 32 H 1.09001 * 109.47694 * 300.00035 * 6 5 4 33 33 H 1.08994 * 109.52117 * 305.13031 * 7 6 5 34 34 H 1.08998 * 109.50519 * 62.44416 * 8 7 6 35 35 H 1.08998 * 109.53606 * 302.33541 * 8 7 6 36 36 H 1.08994 * 109.46299 * 299.16822 * 9 8 7 37 37 H 1.09003 * 109.45395 * 179.18930 * 9 8 7 38 38 H 1.08996 * 109.46919 * 173.61386 * 11 10 9 39 39 H 1.08994 * 109.47139 * 53.61230 * 11 10 9 40 40 H 0.97002 * 119.99804 * 0.02562 * 14 12 11 41 41 H 0.96995 * 120.00006 * 180.02562 * 18 17 15 42 42 H 1.08998 * 109.46555 * 181.75400 * 23 10 9 43 43 H 1.09004 * 109.46392 * 301.72721 * 23 10 9 44 44 H 1.08998 * 109.50374 * 180.88473 * 24 23 10 45 45 H 1.09001 * 109.50604 * 60.76106 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1672 0.0000 6 6 4.1559 -2.6097 0.0014 7 6 5.6859 -2.6097 0.0001 8 6 6.1975 -4.0476 -0.1242 9 6 7.7267 -4.0466 -0.0653 10 7 8.1684 -3.4591 1.2061 11 6 9.6255 -3.5676 1.3580 12 6 10.0103 -5.0187 1.4892 13 8 9.1496 -5.8691 1.5734 14 7 11.3109 -5.3715 1.5128 15 6 11.6609 -6.6916 1.6326 16 1 10.8946 -7.4488 1.7076 17 6 13.0018 -7.0553 1.6575 18 7 13.3374 -8.3207 1.7718 19 14 14.3274 -5.7455 1.5284 20 1 14.6875 -5.2700 2.8883 21 1 15.5284 -6.3199 0.8706 22 1 13.8199 -4.6053 0.7237 23 6 7.7291 -2.0632 1.3270 24 6 6.1999 -2.0049 1.3096 25 1 -0.3633 -0.5139 0.8900 26 1 -0.3633 1.0277 -0.0005 27 1 -0.3633 -0.5138 -0.8900 28 1 1.6959 -2.0073 0.0005 29 1 4.0096 -0.6528 0.8895 30 1 4.0089 -0.6540 -0.8905 31 1 3.7922 -3.1245 -0.8879 32 1 3.7929 -3.1226 0.8920 33 1 6.0495 -2.0196 -0.8411 34 1 5.8703 -4.4693 -1.0746 35 1 5.8020 -4.6473 0.6955 36 1 8.1217 -3.4586 -0.8936 37 1 8.0935 -5.0704 -0.1391 38 1 9.9389 -3.0265 2.2508 39 1 10.1149 -3.1395 0.4832 40 1 11.9992 -4.6913 1.4458 41 1 14.2734 -8.5745 1.7896 42 1 8.0977 -1.6463 2.2643 43 1 8.1241 -1.4845 0.4920 44 1 5.8744 -0.9673 1.3836 45 1 5.8045 -2.5720 2.1523 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698719078.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:43:23 Heat of formation + Delta-G solvation = -82.602315 kcal Electronic energy + Delta-G solvation = -23779.528142 eV Core-core repulsion = 20217.315497 eV Total energy + Delta-G solvation = -3562.212645 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.96836 -39.35312 -37.97673 -35.90807 -34.16589 -33.68907 -31.66799 -31.06742 -30.67926 -29.25724 -26.89773 -24.64799 -23.51020 -22.81519 -21.39491 -20.79811 -19.64461 -19.32277 -18.25301 -17.12217 -16.48651 -16.15975 -15.91079 -15.42170 -15.03123 -14.92107 -14.71709 -14.11890 -14.08963 -13.83058 -13.53772 -13.35016 -13.10221 -13.05182 -12.64755 -12.57474 -12.42992 -12.12030 -12.09451 -11.78606 -11.50827 -11.41895 -11.10783 -11.07561 -10.71823 -10.58735 -10.40177 -10.20705 -10.09523 -9.96181 -9.51177 -9.39414 -8.52437 -8.16009 -7.91002 -6.29893 -3.80989 2.31220 2.89393 3.03343 3.07725 3.15727 3.77028 3.97007 4.11455 4.41796 4.52995 4.58283 4.73173 4.79206 4.85718 4.93583 5.03953 5.10238 5.21755 5.29563 5.32837 5.40280 5.46314 5.47328 5.58965 5.62103 5.70301 5.75020 5.80618 5.82972 5.89562 5.99166 6.03516 6.06798 6.11389 6.20575 6.41885 6.49029 7.14693 7.24548 7.40040 7.60867 7.88371 8.16276 8.62391 8.97040 9.44409 9.86213 10.83325 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.050033 B = 0.002272 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.493737 B =12318.433407 C =12662.358737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.507 3.493 3 O -0.549 6.549 4 N -0.732 5.732 5 C 0.115 3.885 6 C -0.125 4.125 7 C -0.085 4.085 8 C -0.106 4.106 9 C 0.054 3.946 10 N -0.515 5.515 11 C 0.043 3.957 12 C 0.453 3.547 13 O -0.558 6.558 14 N -0.593 5.593 15 C -0.303 4.303 16 H 0.119 0.881 17 C 0.041 3.959 18 N -0.882 5.882 19 Si 0.879 3.121 20 H -0.271 1.271 21 H -0.277 1.277 22 H -0.270 1.270 23 C 0.055 3.945 24 C -0.112 4.112 25 H 0.088 0.912 26 H 0.091 0.909 27 H 0.087 0.913 28 H 0.401 0.599 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.022 0.978 37 H 0.097 0.903 38 H 0.090 0.910 39 H 0.046 0.954 40 H 0.370 0.630 41 H 0.273 0.727 42 H 0.073 0.927 43 H 0.028 0.972 44 H 0.065 0.935 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.934 15.564 -4.659 25.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.294 3.706 3 O -0.426 6.426 4 N -0.384 5.384 5 C -0.008 4.008 6 C -0.162 4.162 7 C -0.104 4.104 8 C -0.144 4.144 9 C -0.073 4.073 10 N -0.239 5.239 11 C -0.088 4.088 12 C 0.238 3.762 13 O -0.439 6.439 14 N -0.233 5.233 15 C -0.432 4.432 16 H 0.137 0.863 17 C -0.162 4.162 18 N -0.523 5.523 19 Si 0.706 3.294 20 H -0.196 1.196 21 H -0.202 1.202 22 H -0.196 1.196 23 C -0.073 4.073 24 C -0.149 4.149 25 H 0.106 0.894 26 H 0.110 0.890 27 H 0.106 0.894 28 H 0.235 0.765 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.040 0.960 37 H 0.115 0.885 38 H 0.108 0.892 39 H 0.064 0.936 40 H 0.202 0.798 41 H 0.083 0.917 42 H 0.091 0.909 43 H 0.047 0.953 44 H 0.084 0.916 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -20.125 15.310 -4.209 25.635 hybrid contribution 1.485 0.939 -0.736 1.905 sum -18.640 16.249 -4.945 25.218 Atomic orbital electron populations 1.21924 0.91719 1.05543 1.04254 1.20839 0.90664 0.83519 0.75607 1.90734 1.70963 1.31481 1.49447 1.46122 1.07830 1.08757 1.75735 1.21492 0.79042 0.97771 1.02524 1.21837 0.96366 0.95136 1.02896 1.21158 0.93312 0.97663 0.98273 1.21579 0.95375 0.95391 1.02033 1.22182 0.95102 1.01661 0.88363 1.61493 1.11048 1.16251 1.35133 1.21878 0.88657 0.96864 1.01425 1.19680 0.82993 0.89584 0.83904 1.90542 1.48703 1.51537 1.53127 1.42237 1.05662 1.08534 1.66861 1.19421 0.93903 0.82496 1.47380 0.86295 1.25034 0.97176 0.96272 0.97734 1.69619 1.18165 1.15165 1.49314 0.86675 0.82374 0.81481 0.78867 1.19623 1.20229 1.19568 1.22098 0.95700 0.88936 1.00587 1.21687 0.94931 1.00430 0.97888 0.89364 0.89016 0.89425 0.76476 0.91125 0.91631 0.91272 0.90939 0.91376 0.91842 0.90687 0.96020 0.88462 0.89194 0.93641 0.79766 0.91660 0.90869 0.95345 0.91629 0.90808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.79 10.32 36.01 0.37 -0.42 16 2 C 0.51 4.48 7.94 -10.99 -0.09 4.39 16 3 O -0.55 -7.56 17.09 5.56 0.09 -7.46 16 4 N -0.73 -5.10 5.56 -60.29 -0.33 -5.43 16 5 C 0.12 0.95 5.44 -4.04 -0.02 0.93 16 6 C -0.12 -0.93 4.80 -26.73 -0.13 -1.06 16 7 C -0.08 -0.83 2.25 -90.49 -0.20 -1.03 16 8 C -0.11 -1.29 5.38 -26.65 -0.14 -1.43 16 9 C 0.05 0.84 5.12 -3.83 -0.02 0.82 16 10 N -0.51 -8.21 4.35 -236.12 -1.03 -9.23 16 11 C 0.04 0.74 5.45 -4.98 -0.03 0.71 16 12 C 0.45 10.28 7.31 -10.99 -0.08 10.20 16 13 O -0.56 -14.79 14.29 5.55 0.08 -14.71 16 14 N -0.59 -14.16 5.09 -10.96 -0.06 -14.21 16 15 C -0.30 -8.57 10.16 -14.93 -0.15 -8.72 16 16 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 17 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 18 N -0.88 -25.80 13.96 55.50 0.77 -25.03 16 19 Si 0.88 19.44 27.74 -169.99 -4.71 14.72 16 20 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 21 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 22 H -0.27 -5.46 6.52 56.52 0.37 -5.09 16 23 C 0.05 0.67 5.46 -3.83 -0.02 0.65 16 24 C -0.11 -1.16 5.08 -26.65 -0.14 -1.30 16 25 H 0.09 0.25 8.14 -51.93 -0.42 -0.18 16 26 H 0.09 0.46 8.12 -51.93 -0.42 0.04 16 27 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.40 1.63 8.47 -40.82 -0.35 1.28 16 29 H 0.07 0.66 6.64 -51.93 -0.34 0.32 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.10 1.86 6.06 -51.93 -0.31 1.55 16 38 H 0.09 1.35 7.98 -51.93 -0.41 0.93 16 39 H 0.05 0.70 8.12 -51.93 -0.42 0.27 16 40 H 0.37 7.78 5.76 -40.82 -0.24 7.55 16 41 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 42 H 0.07 0.85 8.01 -51.93 -0.42 0.43 16 43 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.07 0.60 6.71 -51.93 -0.35 0.25 16 45 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 360.11 15.07 5.43 5.43 Total: -1.00 -35.13 360.11 -7.97 -43.10 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -7.47 Total: 8.08 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: -0.74 Total: 4.76 kcal Atomic # 7 Polarization: -53.27 SS G_CDS: -0.64 Total: -53.91 kcal Atomic # 8 Polarization: -22.35 SS G_CDS: 0.17 Total: -22.18 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -4.71 Total: 14.72 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -35.13 -7.97 -43.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698719078.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.503 kcal (2) G-P(sol) polarization free energy of solvation -35.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds