Wall clock time and date at job start Fri Apr 10 2020 17:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21280 * 120.00028 * 2 1 4 4 N 1.34773 * 119.99853 * 179.97438 * 2 1 3 5 5 C 1.46506 * 119.99858 * 179.97438 * 4 2 1 6 6 C 1.52999 * 109.46865 * 179.97438 * 5 4 2 7 7 C 1.53007 * 109.46899 * 179.97438 * 6 5 4 8 8 C 1.53119 * 109.52018 * 185.00022 * 7 6 5 9 9 C 1.53039 * 109.27478 * 182.37728 * 8 7 6 10 10 N 1.46852 * 109.52336 * 59.18093 * 9 8 7 11 11 C 1.46900 * 111.00118 * 174.15791 * 10 9 8 12 12 C 1.50697 * 109.47237 * 293.61170 * 11 10 9 13 13 O 1.21294 * 119.99957 * 353.73088 * 12 11 10 14 14 N 1.34777 * 120.00218 * 173.72893 * 12 11 10 15 15 C 1.37099 * 120.00043 * 179.97438 * 14 12 11 16 16 H 1.07997 * 119.99929 * 0.02562 * 15 14 12 17 17 C 1.38955 * 119.99738 * 180.02562 * 15 14 12 18 18 N 1.31409 * 119.99982 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 120.00043 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47177 * 89.99772 * 19 17 15 21 21 H 1.48502 * 109.47005 * 210.00103 * 19 17 15 22 22 H 1.48502 * 109.47199 * 329.99788 * 19 17 15 23 23 C 1.46845 * 111.19897 * 298.25829 * 10 9 8 24 24 C 1.53038 * 109.52423 * 61.74130 * 23 10 9 25 25 H 1.09001 * 109.46920 * 239.99766 * 1 2 3 26 26 H 1.08999 * 109.47018 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.46857 * 119.99976 * 1 2 3 28 28 H 0.97002 * 120.00507 * 0.02562 * 4 2 1 29 29 H 1.09001 * 109.46778 * 60.00211 * 5 4 2 30 30 H 1.09000 * 109.47209 * 299.99919 * 5 4 2 31 31 H 1.09001 * 109.47218 * 60.00520 * 6 5 4 32 32 H 1.09001 * 109.47694 * 300.00035 * 6 5 4 33 33 H 1.08994 * 109.52117 * 305.13031 * 7 6 5 34 34 H 1.08998 * 109.50519 * 62.44416 * 8 7 6 35 35 H 1.08998 * 109.53606 * 302.33541 * 8 7 6 36 36 H 1.08994 * 109.46299 * 299.16822 * 9 8 7 37 37 H 1.09003 * 109.45395 * 179.18930 * 9 8 7 38 38 H 1.08996 * 109.46919 * 173.61386 * 11 10 9 39 39 H 1.08994 * 109.47139 * 53.61230 * 11 10 9 40 40 H 0.97002 * 119.99804 * 0.02562 * 14 12 11 41 41 H 0.96995 * 120.00006 * 180.02562 * 18 17 15 42 42 H 1.08998 * 109.46555 * 181.75400 * 23 10 9 43 43 H 1.09004 * 109.46392 * 301.72721 * 23 10 9 44 44 H 1.08998 * 109.50374 * 180.88473 * 24 23 10 45 45 H 1.09001 * 109.50604 * 60.76106 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1672 0.0000 6 6 4.1559 -2.6097 0.0014 7 6 5.6859 -2.6097 0.0001 8 6 6.1975 -4.0476 -0.1242 9 6 7.7267 -4.0466 -0.0653 10 7 8.1684 -3.4591 1.2061 11 6 9.6255 -3.5676 1.3580 12 6 10.0103 -5.0187 1.4892 13 8 9.1496 -5.8691 1.5734 14 7 11.3109 -5.3715 1.5128 15 6 11.6609 -6.6916 1.6326 16 1 10.8946 -7.4488 1.7076 17 6 13.0018 -7.0553 1.6575 18 7 13.3374 -8.3207 1.7718 19 14 14.3274 -5.7455 1.5284 20 1 14.6875 -5.2700 2.8883 21 1 15.5284 -6.3199 0.8706 22 1 13.8199 -4.6053 0.7237 23 6 7.7291 -2.0632 1.3270 24 6 6.1999 -2.0049 1.3096 25 1 -0.3633 -0.5139 0.8900 26 1 -0.3633 1.0277 -0.0005 27 1 -0.3633 -0.5138 -0.8900 28 1 1.6959 -2.0073 0.0005 29 1 4.0096 -0.6528 0.8895 30 1 4.0089 -0.6540 -0.8905 31 1 3.7922 -3.1245 -0.8879 32 1 3.7929 -3.1226 0.8920 33 1 6.0495 -2.0196 -0.8411 34 1 5.8703 -4.4693 -1.0746 35 1 5.8020 -4.6473 0.6955 36 1 8.1217 -3.4586 -0.8936 37 1 8.0935 -5.0704 -0.1391 38 1 9.9389 -3.0265 2.2508 39 1 10.1149 -3.1395 0.4832 40 1 11.9992 -4.6913 1.4458 41 1 14.2734 -8.5745 1.7896 42 1 8.0977 -1.6463 2.2643 43 1 8.1241 -1.4845 0.4920 44 1 5.8744 -0.9673 1.3836 45 1 5.8045 -2.5720 2.1523 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698719078.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:43:22 Heat of formation + Delta-G solvation = -110.945967 kcal Electronic energy + Delta-G solvation = -23780.757215 eV Core-core repulsion = 20217.315497 eV Total energy + Delta-G solvation = -3563.441718 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.86568 -40.51557 -39.45101 -36.84626 -35.93995 -34.82652 -33.73636 -31.89950 -31.58976 -30.06870 -28.21019 -26.17194 -24.67855 -23.81507 -22.24466 -21.53313 -21.24419 -20.55278 -20.18822 -17.77805 -17.72093 -17.21538 -16.85498 -16.66825 -16.49413 -16.31705 -15.58666 -15.39268 -15.31606 -14.99781 -14.71050 -14.50154 -14.44848 -14.13502 -13.83883 -13.64168 -13.32529 -13.12571 -13.03054 -12.93479 -12.83820 -12.44065 -12.38688 -12.24377 -12.07798 -11.98449 -11.60950 -11.51454 -11.27488 -11.10234 -10.89580 -10.33617 -10.22281 -10.06382 -9.15404 -8.40937 -6.01275 1.29696 1.35154 1.43719 1.66866 1.97114 2.22770 2.33419 2.64994 3.15073 3.24841 3.74024 3.84614 3.86201 3.99493 4.11616 4.23931 4.28971 4.34902 4.38612 4.46955 4.54514 4.57115 4.57539 4.65271 4.69240 4.70117 4.82394 4.92696 5.01301 5.06726 5.07436 5.17097 5.20786 5.30189 5.32325 5.49675 5.53308 5.56863 5.92415 6.08794 6.29312 6.60802 6.61119 6.89421 7.29556 7.41046 7.98651 8.76745 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.050033 B = 0.002272 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.493737 B =12318.433407 C =12662.358737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.499 3.501 3 O -0.606 6.606 4 N -0.721 5.721 5 C 0.119 3.881 6 C -0.112 4.112 7 C -0.078 4.078 8 C -0.100 4.100 9 C 0.055 3.945 10 N -0.537 5.537 11 C 0.054 3.946 12 C 0.451 3.549 13 O -0.604 6.604 14 N -0.594 5.594 15 C -0.326 4.326 16 H 0.055 0.945 17 C -0.016 4.016 18 N -0.935 5.935 19 Si 0.965 3.035 20 H -0.257 1.257 21 H -0.275 1.275 22 H -0.233 1.233 23 C 0.054 3.946 24 C -0.109 4.109 25 H 0.110 0.890 26 H 0.085 0.915 27 H 0.111 0.889 28 H 0.417 0.583 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.056 0.944 36 H 0.035 0.965 37 H 0.049 0.951 38 H 0.119 0.881 39 H 0.073 0.927 40 H 0.388 0.612 41 H 0.279 0.721 42 H 0.083 0.917 43 H 0.042 0.958 44 H 0.083 0.917 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.324 18.698 -5.250 28.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.288 3.712 3 O -0.488 6.488 4 N -0.373 5.373 5 C -0.005 4.005 6 C -0.149 4.149 7 C -0.097 4.097 8 C -0.138 4.138 9 C -0.073 4.073 10 N -0.263 5.263 11 C -0.077 4.077 12 C 0.239 3.761 13 O -0.487 6.487 14 N -0.236 5.236 15 C -0.455 4.455 16 H 0.073 0.927 17 C -0.214 4.214 18 N -0.576 5.576 19 Si 0.785 3.215 20 H -0.181 1.181 21 H -0.200 1.200 22 H -0.157 1.157 23 C -0.073 4.073 24 C -0.146 4.146 25 H 0.129 0.871 26 H 0.104 0.896 27 H 0.130 0.870 28 H 0.254 0.746 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.101 0.899 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.075 0.925 36 H 0.053 0.947 37 H 0.068 0.932 38 H 0.137 0.863 39 H 0.091 0.909 40 H 0.224 0.776 41 H 0.088 0.912 42 H 0.102 0.898 43 H 0.060 0.940 44 H 0.102 0.898 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -20.557 18.431 -4.803 28.025 hybrid contribution 1.489 -0.159 -0.540 1.591 sum -19.069 18.272 -5.343 26.945 Atomic orbital electron populations 1.21929 0.88272 1.05911 1.06450 1.21632 0.92383 0.82894 0.74281 1.90708 1.72361 1.33466 1.52275 1.46056 1.07460 1.09273 1.74550 1.21358 0.79868 0.97768 1.01526 1.21695 0.94655 0.94804 1.03770 1.21081 0.94753 0.95638 0.98227 1.21519 0.93147 0.97112 1.02002 1.22091 0.97203 0.99115 0.88882 1.61462 1.10374 1.18915 1.35513 1.21815 0.89927 0.92084 1.03922 1.20905 0.81999 0.92014 0.81170 1.90525 1.50007 1.53858 1.54345 1.42068 1.06798 1.07129 1.67631 1.18991 0.93290 0.83624 1.49587 0.92651 1.26099 0.99768 0.99325 0.96244 1.69801 1.19270 1.18235 1.50255 0.85368 0.77609 0.78557 0.80004 1.18144 1.20021 1.15681 1.22217 0.96792 0.86632 1.01666 1.21681 0.93792 1.01371 0.97782 0.87108 0.89642 0.87031 0.74553 0.92256 0.92613 0.89907 0.90574 0.90665 0.90552 0.92537 0.94731 0.93203 0.86340 0.90942 0.77624 0.91191 0.89821 0.93962 0.89841 0.91874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.10 10.32 71.24 0.74 -0.37 16 2 C 0.50 8.10 7.94 87.66 0.70 8.79 16 3 O -0.61 -16.56 17.09 -3.03 -0.05 -16.61 16 4 N -0.72 -8.53 5.56 -463.05 -2.57 -11.11 16 5 C 0.12 1.73 5.44 86.38 0.47 2.20 16 6 C -0.11 -1.41 4.80 30.60 0.15 -1.26 16 7 C -0.08 -1.35 2.25 -10.71 -0.02 -1.37 16 8 C -0.10 -2.36 5.38 30.65 0.16 -2.19 16 9 C 0.05 1.68 5.12 86.33 0.44 2.12 16 10 N -0.54 -16.43 4.35 -900.94 -3.92 -20.35 16 11 C 0.05 1.71 5.45 85.56 0.47 2.18 16 12 C 0.45 20.75 7.31 87.66 0.64 21.39 16 13 O -0.60 -33.72 14.29 -3.07 -0.04 -33.76 16 14 N -0.59 -28.43 5.09 -306.98 -1.56 -29.99 16 15 C -0.33 -19.24 10.16 84.04 0.85 -18.39 16 16 H 0.06 3.89 7.39 -2.91 -0.02 3.87 16 17 C -0.02 -0.89 5.50 84.93 0.47 -0.42 16 18 N -0.93 -56.71 13.96 21.66 0.30 -56.40 16 19 Si 0.96 39.19 27.74 68.60 1.90 41.09 16 20 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 21 H -0.28 -11.08 7.11 99.48 0.71 -10.38 16 22 H -0.23 -8.03 6.52 99.48 0.65 -7.38 16 23 C 0.05 1.18 5.46 86.33 0.47 1.65 16 24 C -0.11 -2.02 5.08 30.65 0.16 -1.87 16 25 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 26 H 0.08 0.72 8.12 -2.39 -0.02 0.70 16 27 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 28 H 0.42 2.20 8.47 -92.71 -0.79 1.41 16 29 H 0.06 1.02 6.64 -2.39 -0.02 1.01 16 30 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.05 1.99 6.06 -2.39 -0.01 1.98 16 38 H 0.12 3.14 7.98 -2.39 -0.02 3.12 16 39 H 0.07 1.96 8.12 -2.39 -0.02 1.94 16 40 H 0.39 15.45 5.76 -92.71 -0.53 14.92 16 41 H 0.28 15.44 8.31 -92.71 -0.77 14.67 16 42 H 0.08 1.66 8.01 -2.39 -0.02 1.64 16 43 H 0.04 0.83 8.14 -2.38 -0.02 0.81 16 44 H 0.08 1.30 6.71 -2.39 -0.02 1.28 16 45 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -83.96 360.11 -0.64 -84.60 By element: Atomic # 1 Polarization: 30.46 SS G_CDS: -0.39 Total: 30.07 kcal Atomic # 6 Polarization: 6.77 SS G_CDS: 5.69 Total: 12.46 kcal Atomic # 7 Polarization: -110.10 SS G_CDS: -7.75 Total: -117.85 kcal Atomic # 8 Polarization: -50.28 SS G_CDS: -0.10 Total: -50.37 kcal Atomic # 14 Polarization: 39.19 SS G_CDS: 1.90 Total: 41.09 kcal Total: -83.96 -0.64 -84.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698719078.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.345 kcal (2) G-P(sol) polarization free energy of solvation -83.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds