Wall clock time and date at job start Fri Apr 10 2020 17:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.47134 * 2 1 4 4 C 1.46499 * 120.00375 * 83.91822 * 3 2 1 5 5 C 1.52999 * 109.46959 * 90.00002 * 4 3 2 6 6 N 1.46502 * 109.47334 * 179.97438 * 5 4 3 7 7 C 1.36932 * 120.00274 * 179.97438 * 6 5 4 8 8 H 1.08004 * 120.00203 * 0.02562 * 7 6 5 9 9 C 1.38811 * 119.99982 * 180.02562 * 7 6 5 10 10 N 1.31621 * 120.00026 * 180.02562 * 9 7 6 11 11 Si 1.86798 * 120.00067 * 359.97438 * 9 7 6 12 12 H 1.48499 * 109.46761 * 90.00518 * 11 9 7 13 13 H 1.48506 * 109.47252 * 210.00194 * 11 9 7 14 14 H 1.48496 * 109.47206 * 330.00544 * 11 9 7 15 15 C 1.34777 * 119.99770 * 263.92035 * 3 2 1 16 16 O 1.21280 * 120.00134 * 184.19068 * 15 3 2 17 17 C 1.50699 * 119.99942 * 4.18325 * 15 3 2 18 18 H 1.09004 * 110.02183 * 309.25834 * 17 15 3 19 19 C 1.53880 * 110.03178 * 70.65130 * 17 15 3 20 20 C 1.54259 * 106.60016 * 119.28369 * 19 17 15 21 21 C 1.54894 * 104.19850 * 23.60740 * 20 19 17 22 22 H 1.08997 * 110.75029 * 80.37230 * 21 20 19 23 23 C 1.50691 * 110.75675 * 203.74082 * 21 20 19 24 24 N 1.34778 * 120.00784 * 298.54888 * 23 21 20 25 25 O 1.21288 * 119.99825 * 118.55372 * 23 21 20 26 26 C 1.54263 * 110.03442 * 187.81290 * 17 15 3 27 27 H 1.08995 * 109.46791 * 51.59887 * 1 2 3 28 28 H 1.09001 * 109.46727 * 171.59984 * 1 2 3 29 29 H 1.09002 * 109.47050 * 291.59860 * 1 2 3 30 30 H 1.09005 * 109.47357 * 119.99773 * 2 1 3 31 31 H 1.09000 * 109.47339 * 239.99862 * 2 1 3 32 32 H 1.08997 * 109.47029 * 209.99643 * 4 3 2 33 33 H 1.08995 * 109.46811 * 330.00164 * 4 3 2 34 34 H 1.08999 * 109.47399 * 300.00307 * 5 4 3 35 35 H 1.09007 * 109.47481 * 60.00140 * 5 4 3 36 36 H 0.96996 * 119.99713 * 0.02562 * 6 5 4 37 37 H 0.97002 * 120.00063 * 179.97438 * 10 9 7 38 38 H 1.09002 * 110.02848 * 238.56885 * 19 17 15 39 39 H 1.08997 * 110.02992 * 359.97438 * 19 17 15 40 40 H 1.09001 * 110.49175 * 142.28956 * 20 19 17 41 41 H 1.09002 * 110.48961 * 264.79956 * 20 19 17 42 42 H 0.97003 * 119.99132 * 0.02562 * 24 23 21 43 43 H 0.96993 * 120.00363 * 180.02562 * 24 23 21 44 44 H 1.09001 * 110.48752 * 335.78886 * 26 17 15 45 45 H 1.09005 * 110.48898 * 98.42702 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1358 2.1167 1.2615 5 6 3.5291 1.8946 1.8535 6 7 3.6468 2.6306 3.1147 7 6 4.8133 2.5809 3.8302 8 1 5.6468 1.9994 3.4644 9 6 4.9247 3.2778 5.0255 10 7 6.0461 3.2304 5.7129 11 14 3.4834 4.2840 5.6577 12 1 2.6265 3.4326 6.5214 13 1 3.9915 5.4355 6.4459 14 1 2.6866 4.7837 4.5086 15 6 2.3595 1.9753 -1.1607 16 8 2.8351 3.0910 -1.1540 17 6 2.1502 1.2532 -2.4667 18 1 2.5846 0.2548 -2.4150 19 6 0.6470 1.1583 -2.7815 20 6 0.4282 1.9016 -4.1155 21 6 1.8142 1.8590 -4.8058 22 1 1.9760 0.8949 -5.2879 23 6 1.9509 2.9841 -5.7989 24 7 1.1129 3.0594 -6.8517 25 8 2.8154 3.8219 -5.6508 26 6 2.7924 2.0509 -3.6204 27 1 -0.3633 0.6383 -0.8053 28 1 -0.3633 -1.0167 -0.1501 29 1 -0.3633 0.3783 0.9555 30 1 1.8934 -0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.9847 3.1803 1.0774 33 1 1.3819 1.7585 1.9624 34 1 3.6803 0.8310 2.0375 35 1 4.2831 2.2528 1.1525 36 1 2.8982 3.1524 3.4434 37 1 6.1241 3.7177 6.5480 38 1 0.3521 0.1139 -2.8833 39 1 0.0689 1.6341 -1.9894 40 1 -0.3161 1.3858 -4.7221 41 1 0.1225 2.9317 -3.9326 42 1 0.4214 2.3895 -6.9700 43 1 1.2012 3.7834 -7.4911 44 1 2.8708 3.1058 -3.3575 45 1 3.7735 1.6441 -3.8658 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699204516.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:43:46 Heat of formation + Delta-G solvation = -100.504389 kcal Electronic energy + Delta-G solvation = -24637.569061 eV Core-core repulsion = 21074.580124 eV Total energy + Delta-G solvation = -3562.988937 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.67932 -40.51582 -38.02253 -37.42004 -36.47979 -34.65142 -33.82279 -31.86415 -30.84057 -29.79438 -29.18425 -25.71611 -24.42994 -23.74905 -23.13951 -22.12213 -20.76147 -19.97582 -19.30636 -18.70199 -17.95873 -17.65070 -17.30137 -16.98355 -16.46896 -16.15165 -15.62732 -15.46381 -15.19598 -15.16286 -14.77104 -14.71828 -14.50058 -14.26126 -13.67335 -13.44848 -13.13162 -13.09111 -12.94069 -12.83345 -12.49925 -12.29962 -12.19113 -12.15692 -12.06602 -11.92443 -11.87070 -11.58188 -11.44615 -11.04445 -10.92554 -10.67923 -10.63241 -9.71816 -9.40443 -8.08544 -5.44570 1.34375 1.39673 1.46750 1.62778 1.67071 1.94874 2.44319 2.65134 3.21960 3.33853 3.47849 3.64777 3.72974 3.97930 4.13279 4.14278 4.20333 4.27744 4.34526 4.39586 4.46466 4.50957 4.55036 4.58655 4.69465 4.73684 4.92882 4.94074 5.00640 5.03888 5.09467 5.13379 5.23066 5.32617 5.39196 5.54100 5.59358 5.68294 5.92671 6.14417 6.45688 6.51821 6.99543 7.21883 7.40552 7.72911 7.94643 9.12938 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.022250 B = 0.003140 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.139046 B = 8915.090301 C = 9583.559284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.093 3.907 3 N -0.604 5.604 4 C 0.119 3.881 5 C 0.151 3.849 6 N -0.755 5.755 7 C -0.243 4.243 8 H 0.051 0.949 9 C -0.063 4.063 10 N -0.982 5.982 11 Si 0.962 3.038 12 H -0.266 1.266 13 H -0.293 1.293 14 H -0.257 1.257 15 C 0.504 3.496 16 O -0.591 6.591 17 C -0.103 4.103 18 H 0.131 0.869 19 C -0.109 4.109 20 C -0.107 4.107 21 C -0.105 4.105 22 H 0.147 0.853 23 C 0.515 3.485 24 N -0.834 5.834 25 O -0.603 6.603 26 C -0.104 4.104 27 H 0.074 0.926 28 H 0.094 0.906 29 H 0.045 0.955 30 H 0.078 0.922 31 H 0.110 0.890 32 H 0.058 0.942 33 H 0.102 0.898 34 H 0.035 0.965 35 H -0.003 1.003 36 H 0.368 0.632 37 H 0.261 0.739 38 H 0.124 0.876 39 H 0.068 0.932 40 H 0.122 0.878 41 H 0.048 0.952 42 H 0.420 0.580 43 H 0.404 0.596 44 H 0.048 0.952 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.642 -12.903 -26.820 37.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.028 4.028 3 N -0.336 5.336 4 C -0.006 4.006 5 C 0.023 3.977 6 N -0.401 5.401 7 C -0.374 4.374 8 H 0.069 0.931 9 C -0.254 4.254 10 N -0.632 5.632 11 Si 0.788 3.212 12 H -0.191 1.191 13 H -0.220 1.220 14 H -0.181 1.181 15 C 0.294 3.706 16 O -0.471 6.471 17 C -0.124 4.124 18 H 0.149 0.851 19 C -0.146 4.146 20 C -0.145 4.145 21 C -0.126 4.126 22 H 0.165 0.835 23 C 0.301 3.699 24 N -0.398 5.398 25 O -0.484 6.484 26 C -0.143 4.143 27 H 0.092 0.908 28 H 0.113 0.887 29 H 0.064 0.936 30 H 0.097 0.903 31 H 0.128 0.872 32 H 0.077 0.923 33 H 0.120 0.880 34 H 0.053 0.947 35 H 0.015 0.985 36 H 0.202 0.798 37 H 0.069 0.931 38 H 0.142 0.858 39 H 0.087 0.913 40 H 0.140 0.860 41 H 0.066 0.934 42 H 0.252 0.748 43 H 0.235 0.765 44 H 0.067 0.933 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -21.615 -11.996 -26.533 36.264 hybrid contribution 0.152 1.290 0.733 1.491 sum -21.463 -10.706 -25.799 35.226 Atomic orbital electron populations 1.22436 0.93975 1.04240 1.02743 1.21992 0.96044 0.79869 1.04879 1.48045 1.64737 1.15701 1.05088 1.21345 0.96228 0.97154 0.85829 1.20949 0.95999 0.94933 0.85805 1.42522 1.14055 1.59594 1.23968 1.18984 0.91948 1.24863 1.01632 0.93111 1.25596 1.00310 1.01846 0.97684 1.69895 1.27826 1.48197 1.17299 0.85313 0.79085 0.78325 0.78484 1.19126 1.21964 1.18135 1.21543 0.76088 0.86088 0.86916 1.90725 1.45662 1.22914 1.87788 1.22040 1.00297 1.00647 0.89424 0.85109 1.22414 0.91078 1.03948 0.97186 1.22403 0.94775 1.00953 0.96324 1.22332 0.97888 0.98481 0.93878 0.83531 1.21054 0.80088 0.86261 0.82508 1.43708 1.35918 1.33037 1.27115 1.90778 1.37367 1.43900 1.76362 1.22163 0.98451 1.00563 0.93078 0.90768 0.88695 0.93589 0.90339 0.87233 0.92301 0.87965 0.94704 0.98459 0.79849 0.93059 0.85808 0.91315 0.85994 0.93353 0.74753 0.76524 0.93315 0.91438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.77 9.94 71.98 0.72 -1.05 16 2 C 0.09 1.37 5.70 86.38 0.49 1.87 16 3 N -0.60 -15.44 2.47 -821.82 -2.03 -17.47 16 4 C 0.12 3.89 5.51 86.38 0.48 4.37 16 5 C 0.15 6.46 6.58 86.38 0.57 7.03 16 6 N -0.75 -38.53 5.41 -343.44 -1.86 -40.38 16 7 C -0.24 -14.96 10.47 84.03 0.88 -14.08 16 8 H 0.05 3.43 8.06 -2.91 -0.02 3.40 16 9 C -0.06 -3.88 5.50 84.86 0.47 -3.42 16 10 N -0.98 -65.43 13.97 21.65 0.30 -65.12 16 11 Si 0.96 47.25 27.73 68.60 1.90 49.16 16 12 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 13 H -0.29 -14.50 7.11 99.48 0.71 -13.79 16 14 H -0.26 -11.65 6.52 99.48 0.65 -11.00 16 15 C 0.50 14.69 6.71 87.66 0.59 15.28 16 16 O -0.59 -24.86 15.01 -3.03 -0.05 -24.91 16 17 C -0.10 -1.79 2.41 -10.82 -0.03 -1.81 16 18 H 0.13 1.45 6.79 -2.38 -0.02 1.43 16 19 C -0.11 -0.99 4.57 31.32 0.14 -0.84 16 20 C -0.11 -0.88 6.21 31.67 0.20 -0.68 16 21 C -0.10 -1.32 3.29 -10.25 -0.03 -1.35 16 22 H 0.15 0.68 8.14 -2.39 -0.02 0.66 16 23 C 0.51 9.58 7.42 87.65 0.65 10.23 16 24 N -0.83 -6.84 8.82 -173.53 -1.53 -8.37 16 25 O -0.60 -19.40 16.63 -3.06 -0.05 -19.45 16 26 C -0.10 -2.35 5.24 31.67 0.17 -2.19 16 27 H 0.07 0.68 4.57 -2.39 -0.01 0.67 16 28 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.08 1.25 8.12 -2.38 -0.02 1.23 16 31 H 0.11 0.97 5.97 -2.39 -0.01 0.96 16 32 H 0.06 2.22 7.48 -2.39 -0.02 2.20 16 33 H 0.10 2.80 8.07 -2.39 -0.02 2.78 16 34 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.00 -0.14 8.14 -2.38 -0.02 -0.15 16 36 H 0.37 17.55 5.53 -92.71 -0.51 17.04 16 37 H 0.26 16.37 8.31 -92.71 -0.77 15.60 16 38 H 0.12 0.11 8.14 -2.39 -0.02 0.09 16 39 H 0.07 0.83 5.52 -2.39 -0.01 0.82 16 40 H 0.12 -0.06 8.14 -2.39 -0.02 -0.08 16 41 H 0.05 0.66 8.04 -2.39 -0.02 0.64 16 42 H 0.42 -0.09 8.82 -92.71 -0.82 -0.91 16 43 H 0.40 3.16 8.93 -92.71 -0.83 2.33 16 44 H 0.05 1.66 6.18 -2.39 -0.01 1.65 16 45 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 Total: -1.00 -96.01 355.86 0.78 -95.23 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: -1.19 Total: 17.97 kcal Atomic # 6 Polarization: 8.07 SS G_CDS: 5.28 Total: 13.36 kcal Atomic # 7 Polarization: -126.23 SS G_CDS: -5.12 Total: -131.35 kcal Atomic # 8 Polarization: -44.26 SS G_CDS: -0.10 Total: -44.36 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 1.90 Total: 49.16 kcal Total: -96.01 0.78 -95.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699204516.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.276 kcal (2) G-P(sol) polarization free energy of solvation -96.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds