Wall clock time and date at job start Fri Apr 10 2020 17:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21275 * 120.00049 * 2 1 4 4 N 1.34777 * 119.99987 * 180.02562 * 2 1 3 5 5 C 1.46501 * 120.00149 * 359.97438 * 4 2 1 6 6 C 1.46503 * 120.00116 * 179.97438 * 4 2 1 7 7 C 1.50694 * 109.47060 * 269.99676 * 6 4 2 8 8 O 1.21283 * 120.00154 * 0.02562 * 7 6 4 9 9 N 1.34772 * 120.00175 * 180.02562 * 7 6 4 10 10 C 1.46506 * 119.99995 * 180.02562 * 9 7 6 11 11 C 1.52996 * 109.45800 * 299.96834 * 10 9 7 12 12 C 1.53046 * 109.45874 * 179.97438 * 10 9 7 13 13 C 1.53192 * 109.33981 * 301.34223 * 12 10 9 14 14 N 1.46938 * 108.77026 * 305.41317 * 13 12 10 15 15 C 1.36930 * 120.60307 * 233.57630 * 14 13 12 16 16 H 1.07996 * 120.00394 * 27.66273 * 15 14 13 17 17 C 1.38816 * 120.00154 * 207.65921 * 15 14 13 18 18 N 1.31623 * 119.99748 * 17.35845 * 17 15 14 19 19 Si 1.86801 * 120.00255 * 197.36421 * 17 15 14 20 20 H 1.48496 * 109.47323 * 89.99826 * 19 17 15 21 21 H 1.48501 * 109.46818 * 209.99924 * 19 17 15 22 22 H 1.48500 * 109.46759 * 329.99662 * 19 17 15 23 23 C 1.46921 * 118.76297 * 53.55544 * 14 13 12 24 24 C 1.53037 * 109.44882 * 59.93580 * 10 9 7 25 25 H 1.09004 * 109.46464 * 239.99508 * 1 2 3 26 26 H 1.09002 * 109.47071 * 359.97438 * 1 2 3 27 27 H 1.08996 * 109.47516 * 119.99835 * 1 2 3 28 28 H 1.08996 * 109.47602 * 270.00729 * 5 4 2 29 29 H 1.09002 * 109.46804 * 30.00375 * 5 4 2 30 30 H 1.09004 * 109.47313 * 150.00240 * 5 4 2 31 31 H 1.09000 * 109.46862 * 149.99333 * 6 4 2 32 32 H 1.08999 * 109.46731 * 29.99815 * 6 4 2 33 33 H 0.96996 * 120.00188 * 359.97438 * 9 7 6 34 34 H 1.09001 * 109.47055 * 300.02692 * 11 10 9 35 35 H 1.08994 * 109.47133 * 60.03075 * 11 10 9 36 36 H 1.09002 * 109.47070 * 180.02562 * 11 10 9 37 37 H 1.09000 * 109.49625 * 61.30634 * 12 10 9 38 38 H 1.08999 * 109.49769 * 181.37250 * 12 10 9 39 39 H 1.08999 * 109.58731 * 65.16609 * 13 12 10 40 40 H 1.08997 * 109.58721 * 185.59092 * 13 12 10 41 41 H 0.96998 * 119.99441 * 180.02562 * 18 17 15 42 42 H 1.09001 * 109.58442 * 186.62455 * 23 14 13 43 43 H 1.09003 * 109.70657 * 66.26825 * 23 14 13 44 44 H 1.09001 * 109.49590 * 178.59945 * 24 10 9 45 45 H 1.08997 * 109.50136 * 298.66472 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4484 -2.4360 -0.0005 6 6 3.6460 -1.1672 -0.0011 7 6 4.1477 -1.1670 -1.4220 8 8 3.3592 -1.1664 -2.3436 9 7 5.4726 -1.1675 -1.6689 10 6 5.9604 -1.1667 -3.0504 11 6 5.4499 -2.4156 -3.7718 12 6 7.4908 -1.1669 -3.0507 13 6 7.9985 0.0671 -2.2982 14 7 7.3944 1.2664 -2.8948 15 6 8.1796 2.3041 -3.3208 16 1 9.1930 2.1173 -3.6438 17 6 7.6730 3.5964 -3.3377 18 7 6.5933 3.8891 -2.6441 19 14 8.5235 4.9201 -4.3447 20 1 7.9515 4.9438 -5.7148 21 1 8.3178 6.2416 -3.6994 22 1 9.9773 4.6269 -4.4202 23 6 5.9324 1.3309 -3.0260 24 6 5.4490 0.0830 -3.7706 25 1 -0.3632 -0.5139 0.8900 26 1 -0.3633 1.0277 0.0005 27 1 -0.3634 -0.5138 -0.8899 28 1 1.2670 -2.7508 1.0271 29 1 0.4959 -2.3055 -0.5140 30 1 2.0374 -3.1955 -0.5147 31 1 4.0094 -2.0573 0.5125 32 1 4.0094 -0.2774 0.5128 33 1 6.1033 -1.1677 -0.9319 34 1 5.8131 -3.3058 -3.2582 35 1 4.3600 -2.4153 -3.7717 36 1 5.8131 -2.4155 -4.7995 37 1 7.8546 -2.0686 -2.5580 38 1 7.8544 -1.1417 -4.0779 39 1 7.7127 -0.0018 -1.2486 40 1 9.0838 0.1245 -2.3805 41 1 6.2391 4.7920 -2.6562 42 1 5.6551 2.2224 -3.5884 43 1 5.4758 1.3661 -2.0369 44 1 5.8318 0.0970 -4.7911 45 1 4.3593 0.0709 -3.7910 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699767475.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:44:12 Heat of formation + Delta-G solvation = -41.738164 kcal Electronic energy + Delta-G solvation = -25975.768904 eV Core-core repulsion = 22415.328262 eV Total energy + Delta-G solvation = -3560.440642 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.33613 -39.31325 -37.24080 -35.33212 -34.28442 -32.08816 -31.09853 -30.25355 -29.82013 -27.88862 -27.37884 -25.97369 -24.01540 -22.22443 -21.50337 -20.46303 -19.21794 -18.57765 -17.27957 -16.94903 -16.71883 -16.11952 -15.27743 -14.86935 -14.67575 -14.49628 -13.85814 -13.62773 -13.36306 -13.32652 -13.17915 -13.10373 -13.03541 -12.71289 -12.56768 -12.28306 -12.13678 -11.95035 -11.64724 -11.54371 -11.33834 -11.04168 -10.87966 -10.67845 -10.31335 -10.17379 -9.91681 -9.81123 -9.74073 -9.49257 -9.24784 -8.56404 -8.50095 -8.37454 -6.58944 -5.69225 -3.13037 2.63638 2.92328 3.00793 3.43160 3.49496 3.51095 3.69449 4.56031 4.59283 4.91589 4.98200 5.06707 5.16595 5.24006 5.31282 5.39177 5.41770 5.46219 5.48850 5.54942 5.57895 5.66413 5.79099 5.98637 6.04769 6.15162 6.24452 6.29463 6.42922 6.51759 6.55208 6.71064 6.79925 6.88610 7.00045 7.17074 7.32432 7.51736 7.81744 7.88282 7.96004 8.23861 8.53229 8.64362 9.29421 9.93194 10.49743 11.38161 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.017153 B = 0.004838 C = 0.004066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.966519 B = 5785.792281 C = 6884.947518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.512 3.488 3 O -0.529 6.529 4 N -0.603 5.603 5 C 0.085 3.915 6 C 0.094 3.906 7 C 0.501 3.499 8 O -0.533 6.533 9 N -0.710 5.710 10 C 0.185 3.815 11 C -0.158 4.158 12 C -0.137 4.137 13 C 0.146 3.854 14 N -0.590 5.590 15 C -0.257 4.257 16 H 0.065 0.935 17 C 0.004 3.996 18 N -0.897 5.897 19 Si 0.900 3.100 20 H -0.288 1.288 21 H -0.292 1.292 22 H -0.279 1.279 23 C 0.179 3.821 24 C -0.150 4.150 25 H 0.084 0.916 26 H 0.090 0.910 27 H 0.088 0.912 28 H 0.055 0.945 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.102 0.898 32 H 0.113 0.887 33 H 0.396 0.604 34 H 0.045 0.955 35 H 0.071 0.929 36 H 0.057 0.943 37 H 0.054 0.946 38 H 0.073 0.927 39 H 0.013 0.987 40 H 0.055 0.945 41 H 0.254 0.746 42 H 0.083 0.917 43 H 0.018 0.982 44 H 0.057 0.943 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.945 -16.659 6.433 19.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.300 3.700 3 O -0.404 6.404 4 N -0.337 5.337 5 C -0.058 4.058 6 C -0.033 4.033 7 C 0.286 3.714 8 O -0.410 6.410 9 N -0.362 5.362 10 C 0.100 3.900 11 C -0.216 4.216 12 C -0.176 4.176 13 C 0.019 3.981 14 N -0.313 5.313 15 C -0.387 4.387 16 H 0.082 0.918 17 C -0.195 4.195 18 N -0.541 5.541 19 Si 0.731 3.269 20 H -0.215 1.215 21 H -0.218 1.218 22 H -0.205 1.205 23 C 0.053 3.947 24 C -0.190 4.190 25 H 0.103 0.897 26 H 0.109 0.891 27 H 0.107 0.893 28 H 0.074 0.926 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.120 0.880 32 H 0.131 0.869 33 H 0.231 0.769 34 H 0.064 0.936 35 H 0.090 0.910 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.092 0.908 39 H 0.031 0.969 40 H 0.073 0.927 41 H 0.064 0.936 42 H 0.101 0.899 43 H 0.036 0.964 44 H 0.075 0.925 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.273 -15.903 5.791 19.298 hybrid contribution 0.749 0.616 -0.207 0.992 sum -8.523 -15.287 5.584 18.372 Atomic orbital electron populations 1.21906 0.91731 1.05374 1.03810 1.20819 0.90685 0.83029 0.75457 1.90810 1.70523 1.30857 1.48235 1.47399 1.05207 1.06786 1.74341 1.21757 0.97493 0.85318 1.01202 1.21314 0.81471 1.05276 0.95251 1.20903 0.82748 0.76177 0.91586 1.90604 1.55465 1.49216 1.45692 1.46066 1.06435 1.74627 1.09034 1.20254 0.93667 0.95457 0.80666 1.22204 1.03002 0.96526 0.99860 1.22333 0.93462 0.99306 1.02531 1.20853 0.96649 0.86916 0.93678 1.44068 1.02161 1.15329 1.69780 1.19166 0.97078 0.85706 1.36710 0.91763 1.25052 0.98358 0.97048 0.99080 1.70060 1.24299 1.19327 1.40403 0.86324 0.79062 0.81425 0.80138 1.21496 1.21807 1.20490 1.20659 0.82620 0.94421 0.97001 1.22551 1.00997 0.96142 0.99262 0.89685 0.89075 0.89337 0.92633 0.90808 0.91148 0.88035 0.86898 0.76928 0.93628 0.90960 0.92381 0.92722 0.90819 0.96902 0.92697 0.93618 0.89925 0.96365 0.92462 0.91223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.63 8.87 36.01 0.32 -1.31 16 2 C 0.51 7.57 7.78 -10.98 -0.09 7.49 16 3 O -0.53 -10.81 16.66 5.56 0.09 -10.71 16 4 N -0.60 -7.50 2.36 -182.95 -0.43 -7.93 16 5 C 0.09 0.67 10.24 59.85 0.61 1.29 16 6 C 0.09 1.21 5.89 -5.19 -0.03 1.18 16 7 C 0.50 8.20 7.32 -10.99 -0.08 8.11 16 8 O -0.53 -10.31 12.65 5.55 0.07 -10.24 16 9 N -0.71 -11.23 4.10 -47.57 -0.20 -11.43 16 10 C 0.18 3.20 0.66 -131.78 -0.09 3.11 16 11 C -0.16 -2.41 8.40 37.16 0.31 -2.09 16 12 C -0.14 -2.28 4.96 -26.61 -0.13 -2.42 16 13 C 0.15 2.97 6.24 -3.70 -0.02 2.94 16 14 N -0.59 -15.07 2.99 -172.34 -0.52 -15.59 16 15 C -0.26 -7.23 9.58 -15.06 -0.14 -7.37 16 16 H 0.06 1.76 7.89 -52.49 -0.41 1.35 16 17 C 0.00 0.11 4.91 -17.43 -0.09 0.02 16 18 N -0.90 -27.47 11.19 55.49 0.62 -26.84 16 19 Si 0.90 22.45 29.59 -169.99 -5.03 17.42 16 20 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 21 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 C 0.18 4.59 5.05 -3.74 -0.02 4.58 16 24 C -0.15 -3.22 4.66 -26.64 -0.12 -3.34 16 25 H 0.08 0.56 8.11 -51.93 -0.42 0.14 16 26 H 0.09 0.92 8.12 -51.93 -0.42 0.50 16 27 H 0.09 0.74 7.40 -51.93 -0.38 0.35 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.50 6.44 -51.93 -0.33 0.17 16 30 H 0.07 0.55 8.07 -51.93 -0.42 0.13 16 31 H 0.10 0.88 8.07 -51.93 -0.42 0.46 16 32 H 0.11 1.64 7.42 -51.93 -0.39 1.26 16 33 H 0.40 5.51 7.27 -40.82 -0.30 5.21 16 34 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 1.22 6.17 -51.93 -0.32 0.90 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.01 0.26 6.94 -51.93 -0.36 -0.10 16 40 H 0.05 1.10 7.93 -51.93 -0.41 0.68 16 41 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 42 H 0.08 2.44 6.04 -51.93 -0.31 2.13 16 43 H 0.02 0.51 7.74 -51.93 -0.40 0.11 16 44 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 45 H 0.07 1.59 6.20 -51.93 -0.32 1.27 16 LS Contribution 352.40 15.07 5.31 5.31 Total: -1.00 -36.71 352.40 -6.94 -43.65 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -7.30 Total: 4.18 kcal Atomic # 6 Polarization: 11.75 SS G_CDS: 0.43 Total: 12.19 kcal Atomic # 7 Polarization: -61.27 SS G_CDS: -0.52 Total: -61.79 kcal Atomic # 8 Polarization: -21.11 SS G_CDS: 0.16 Total: -20.95 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.03 Total: 17.42 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -36.71 -6.94 -43.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699767475.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.910 kcal (2) G-P(sol) polarization free energy of solvation -36.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds