Wall clock time and date at job start Fri Apr 10 2020 17:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 109.47123 * 2 1 4 4 C 1.36940 * 120.00245 * 265.78534 * 3 2 1 5 5 H 1.08001 * 119.99817 * 146.21276 * 4 3 2 6 6 C 1.38807 * 119.99624 * 326.21628 * 4 3 2 7 7 N 1.31618 * 120.00528 * 337.68126 * 6 4 3 8 8 Si 1.86800 * 119.99866 * 157.68853 * 6 4 3 9 9 H 1.48498 * 109.47423 * 59.99623 * 8 6 4 10 10 H 1.48500 * 109.47599 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47368 * 299.99972 * 8 6 4 12 12 C 1.46506 * 119.99752 * 85.78641 * 3 2 1 13 13 C 1.52997 * 109.46864 * 90.00175 * 12 3 2 14 14 C 1.53007 * 109.46937 * 179.97438 * 13 12 3 15 15 N 1.46499 * 109.47039 * 179.97438 * 14 13 12 16 16 C 1.34778 * 119.99636 * 179.97438 * 15 14 13 17 17 O 1.21282 * 120.00457 * 0.02562 * 16 15 14 18 18 C 1.50699 * 119.99618 * 180.02562 * 16 15 14 19 19 H 1.09005 * 110.88551 * 56.19564 * 18 16 15 20 20 C 1.54853 * 111.04556 * 292.29423 * 18 16 15 21 21 C 1.51276 * 104.21368 * 217.09930 * 20 18 16 22 22 O 1.21281 * 124.94682 * 196.28407 * 21 20 18 23 23 N 1.34421 * 110.11387 * 16.26801 * 21 20 18 24 24 C 1.46498 * 124.34990 * 180.42974 * 23 21 20 25 25 C 1.46755 * 111.30209 * 0.40559 * 23 21 20 26 26 H 1.08996 * 109.46992 * 299.99877 * 1 2 3 27 27 H 1.09004 * 109.46772 * 59.99774 * 1 2 3 28 28 H 1.08999 * 109.46969 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47185 * 240.00197 * 2 1 3 30 30 H 1.08995 * 109.47359 * 120.00151 * 2 1 3 31 31 H 0.97003 * 120.00531 * 179.97438 * 7 6 4 32 32 H 1.08998 * 109.47268 * 329.99670 * 12 3 2 33 33 H 1.09000 * 109.46817 * 209.99698 * 12 3 2 34 34 H 1.09004 * 109.47417 * 60.00116 * 13 12 3 35 35 H 1.09000 * 109.47014 * 299.99402 * 13 12 3 36 36 H 1.09004 * 109.46726 * 59.99994 * 14 13 12 37 37 H 1.08993 * 109.47381 * 300.00257 * 14 13 12 38 38 H 0.97001 * 119.99940 * 0.02562 * 15 14 13 39 39 H 1.09001 * 110.46912 * 98.41985 * 20 18 16 40 40 H 1.09001 * 110.60474 * 335.84809 * 20 18 16 41 41 H 1.09000 * 109.46885 * 269.97507 * 24 23 21 42 42 H 1.09006 * 109.47123 * 29.96976 * 24 23 21 43 43 H 1.09001 * 109.47722 * 149.97271 * 24 23 21 44 44 H 1.08995 * 110.25239 * 101.98336 * 25 23 21 45 45 H 1.09007 * 110.25117 * 223.90172 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3287 1.9978 -1.1827 5 1 2.1595 3.0580 -1.2996 6 6 2.8608 1.2600 -2.2312 7 7 3.4698 0.1183 -1.9902 8 14 2.7126 1.8875 -3.9844 9 1 3.3851 3.2067 -4.0965 10 1 3.3576 0.9233 -4.9115 11 1 1.2778 2.0317 -4.3390 12 6 2.1746 2.1029 1.2654 13 6 3.5853 1.8746 1.8118 14 6 3.7487 2.6288 3.1330 15 7 5.0993 2.4097 3.6565 16 6 5.4725 2.9813 4.8186 17 8 4.6901 3.6767 5.4312 18 6 6.8620 2.7564 5.3568 19 1 7.6145 3.0523 4.6258 20 6 7.0587 1.2828 5.7902 21 6 7.9217 1.3721 7.0294 22 8 8.5341 0.4462 7.5178 23 7 7.9114 2.6273 7.5105 24 6 8.6504 3.0637 8.6977 25 6 7.0651 3.5045 6.6931 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 3.8412 -0.3975 -2.7229 32 1 1.4424 1.7370 1.9852 33 1 2.0180 3.1685 1.0976 34 1 4.3175 2.2406 1.0919 35 1 3.7419 0.8090 1.9795 36 1 3.0166 2.2631 3.8530 37 1 3.5922 3.6942 2.9649 38 1 5.7252 1.8538 3.1664 39 1 7.5702 0.7207 5.0088 40 1 6.0999 0.8209 6.0255 41 1 8.0242 2.9398 9.5813 42 1 9.5532 2.4623 8.8051 43 1 8.9237 4.1134 8.5903 44 1 6.1055 3.6672 7.1838 45 1 7.5657 4.4571 6.5197 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752188470.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:44:25 Heat of formation + Delta-G solvation = -57.158272 kcal Electronic energy + Delta-G solvation = -23840.429691 eV Core-core repulsion = 20279.320383 eV Total energy + Delta-G solvation = -3561.109308 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.02723 -39.35238 -36.68745 -36.33316 -34.96221 -33.34412 -31.94231 -30.93841 -28.81549 -28.03657 -27.21614 -25.37713 -23.71108 -22.81072 -21.48755 -20.44720 -19.86654 -19.60288 -17.75031 -17.11064 -16.69375 -16.04656 -15.90850 -15.53363 -15.34945 -14.72736 -14.48870 -14.06288 -13.99879 -13.83078 -13.69211 -13.43089 -13.10648 -12.73088 -12.62097 -12.44425 -12.30321 -11.92440 -11.68977 -11.64034 -11.50064 -11.10877 -10.99368 -10.74531 -10.69229 -10.32960 -10.30575 -9.99061 -9.82873 -9.78824 -9.59174 -9.07035 -9.00569 -8.50641 -6.66029 -5.82355 -3.35529 2.26675 2.45220 2.62234 3.12450 3.34350 3.40701 3.43281 3.90312 4.02030 4.44766 4.46595 4.54189 4.85031 4.90890 5.00583 5.16218 5.23070 5.26289 5.29383 5.35618 5.40483 5.51452 5.57020 5.77232 5.89747 6.11822 6.13175 6.19176 6.29271 6.45226 6.50053 6.56785 6.68284 6.72372 6.84124 6.87262 7.05508 7.25627 7.46632 7.72908 7.78817 7.83585 8.11023 8.47229 9.15962 9.79825 10.35756 11.18189 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.023678 B = 0.002551 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.268617 B =10973.692640 C =11126.783305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.137 3.863 3 N -0.585 5.585 4 C -0.256 4.256 5 H 0.061 0.939 6 C 0.008 3.992 7 N -0.889 5.889 8 Si 0.897 3.103 9 H -0.282 1.282 10 H -0.291 1.291 11 H -0.283 1.283 12 C 0.152 3.848 13 C -0.147 4.147 14 C 0.118 3.882 15 N -0.718 5.718 16 C 0.522 3.478 17 O -0.541 6.541 18 C -0.126 4.126 19 H 0.119 0.881 20 C -0.145 4.145 21 C 0.520 3.480 22 O -0.531 6.531 23 N -0.625 5.625 24 C 0.096 3.904 25 C 0.117 3.883 26 H 0.032 0.968 27 H 0.048 0.952 28 H 0.034 0.966 29 H 0.099 0.901 30 H 0.019 0.981 31 H 0.255 0.745 32 H 0.036 0.964 33 H 0.044 0.956 34 H 0.071 0.929 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.403 0.597 39 H 0.113 0.887 40 H 0.111 0.889 41 H 0.057 0.943 42 H 0.075 0.925 43 H 0.073 0.927 44 H 0.093 0.907 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.586 5.168 15.534 18.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.011 3.989 3 N -0.305 5.305 4 C -0.386 4.386 5 H 0.079 0.921 6 C -0.192 4.192 7 N -0.532 5.532 8 Si 0.727 3.273 9 H -0.208 1.208 10 H -0.217 1.217 11 H -0.210 1.210 12 C 0.025 3.975 13 C -0.188 4.188 14 C -0.005 4.005 15 N -0.369 5.369 16 C 0.306 3.694 17 O -0.418 6.418 18 C -0.148 4.148 19 H 0.137 0.863 20 C -0.185 4.185 21 C 0.307 3.693 22 O -0.407 6.407 23 N -0.359 5.359 24 C -0.045 4.045 25 C -0.006 4.006 26 H 0.051 0.949 27 H 0.067 0.933 28 H 0.053 0.947 29 H 0.116 0.884 30 H 0.037 0.963 31 H 0.065 0.935 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.238 0.762 39 H 0.132 0.868 40 H 0.129 0.871 41 H 0.076 0.924 42 H 0.094 0.906 43 H 0.092 0.908 44 H 0.112 0.888 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 7.446 5.090 16.166 18.512 hybrid contribution 0.304 0.069 -1.235 1.273 sum 7.749 5.159 14.931 17.596 Atomic orbital electron populations 1.22315 1.00950 0.98691 1.00383 1.20951 0.89759 0.86472 1.01716 1.43916 1.73902 1.11801 1.00869 1.19048 1.35873 0.93964 0.89701 0.92104 1.25076 0.97096 0.97911 0.99116 1.69967 1.36546 1.15844 1.30882 0.86463 0.77980 0.78077 0.84825 1.20809 1.21660 1.20956 1.20781 0.91859 0.96374 0.88505 1.22503 1.02919 0.99695 0.93658 1.21583 0.81805 1.00891 0.96236 1.46158 1.16553 1.51178 1.22986 1.20000 0.88341 0.79835 0.81176 1.90710 1.53753 1.38816 1.58561 1.22300 0.97084 0.96703 0.98679 0.86320 1.22380 1.02372 0.96062 0.97691 1.20774 0.80944 0.82180 0.85370 1.90739 1.45431 1.40367 1.64208 1.48206 1.48281 1.10605 1.28856 1.21557 0.96362 1.00566 0.86062 1.22008 0.96237 0.93085 0.89294 0.94893 0.93288 0.94730 0.88358 0.96275 0.93542 0.94545 0.93726 0.91063 0.92174 0.91922 0.91665 0.76224 0.86848 0.87111 0.92444 0.90609 0.90846 0.88843 0.89672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.25 10.24 37.16 0.38 -2.87 16 2 C 0.14 3.12 5.97 -4.04 -0.02 3.10 16 3 N -0.58 -13.78 2.45 -173.24 -0.43 -14.20 16 4 C -0.26 -6.68 9.49 -15.06 -0.14 -6.82 16 5 H 0.06 1.59 7.92 -52.49 -0.42 1.17 16 6 C 0.01 0.20 4.93 -17.43 -0.09 0.12 16 7 N -0.89 -24.50 11.32 55.49 0.63 -23.87 16 8 Si 0.90 20.94 29.61 -169.99 -5.03 15.90 16 9 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 12 C 0.15 2.94 5.69 -4.04 -0.02 2.92 16 13 C -0.15 -2.47 5.65 -26.73 -0.15 -2.63 16 14 C 0.12 1.64 5.67 -4.04 -0.02 1.62 16 15 N -0.72 -8.26 5.56 -60.29 -0.33 -8.60 16 16 C 0.52 5.96 7.07 -10.99 -0.08 5.89 16 17 O -0.54 -8.07 15.50 5.56 0.09 -7.98 16 18 C -0.13 -1.02 3.55 -90.01 -0.32 -1.34 16 19 H 0.12 0.72 8.14 -51.93 -0.42 0.30 16 20 C -0.14 -1.25 6.41 -26.62 -0.17 -1.42 16 21 C 0.52 5.86 8.02 -10.86 -0.09 5.77 16 22 O -0.53 -8.01 17.59 5.56 0.10 -7.91 16 23 N -0.62 -5.71 3.33 -180.29 -0.60 -6.31 16 24 C 0.10 0.67 10.96 59.85 0.66 1.33 16 25 C 0.12 0.95 6.70 -3.12 -0.02 0.93 16 26 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 28 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.10 2.55 5.32 -51.93 -0.28 2.28 16 30 H 0.02 0.41 8.10 -51.93 -0.42 -0.01 16 31 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 32 H 0.04 0.65 8.07 -51.93 -0.42 0.23 16 33 H 0.04 0.85 8.04 -51.93 -0.42 0.44 16 34 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 35 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.40 3.92 8.47 -40.82 -0.35 3.57 16 39 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.11 0.98 7.90 -51.93 -0.41 0.57 16 41 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.08 0.57 7.93 -51.93 -0.41 0.16 16 43 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.09 0.89 6.96 -51.93 -0.36 0.53 16 45 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 371.79 15.07 5.60 5.60 Total: -1.00 -32.17 371.79 -7.76 -39.93 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -7.69 Total: 0.85 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: -0.09 Total: 6.59 kcal Atomic # 7 Polarization: -52.25 SS G_CDS: -0.73 Total: -52.98 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: 0.18 Total: -15.89 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.03 Total: 15.90 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.17 -7.76 -39.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752188470.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.227 kcal (2) G-P(sol) polarization free energy of solvation -32.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds