Wall clock time and date at job start Fri Apr 10 2020 17:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 109.47123 * 2 1 4 4 C 1.36940 * 120.00245 * 265.78534 * 3 2 1 5 5 H 1.08001 * 119.99817 * 146.21276 * 4 3 2 6 6 C 1.38807 * 119.99624 * 326.21628 * 4 3 2 7 7 N 1.31618 * 120.00528 * 337.68126 * 6 4 3 8 8 Si 1.86800 * 119.99866 * 157.68853 * 6 4 3 9 9 H 1.48498 * 109.47423 * 59.99623 * 8 6 4 10 10 H 1.48500 * 109.47599 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47368 * 299.99972 * 8 6 4 12 12 C 1.46506 * 119.99752 * 85.78641 * 3 2 1 13 13 C 1.52997 * 109.46864 * 90.00175 * 12 3 2 14 14 C 1.53007 * 109.46937 * 179.97438 * 13 12 3 15 15 N 1.46499 * 109.47039 * 179.97438 * 14 13 12 16 16 C 1.34778 * 119.99636 * 179.97438 * 15 14 13 17 17 O 1.21282 * 120.00457 * 0.02562 * 16 15 14 18 18 C 1.50699 * 119.99618 * 180.02562 * 16 15 14 19 19 H 1.09005 * 110.88551 * 56.19564 * 18 16 15 20 20 C 1.54853 * 111.04556 * 292.29423 * 18 16 15 21 21 C 1.51276 * 104.21368 * 217.09930 * 20 18 16 22 22 O 1.21281 * 124.94682 * 196.28407 * 21 20 18 23 23 N 1.34421 * 110.11387 * 16.26801 * 21 20 18 24 24 C 1.46498 * 124.34990 * 180.42974 * 23 21 20 25 25 C 1.46755 * 111.30209 * 0.40559 * 23 21 20 26 26 H 1.08996 * 109.46992 * 299.99877 * 1 2 3 27 27 H 1.09004 * 109.46772 * 59.99774 * 1 2 3 28 28 H 1.08999 * 109.46969 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47185 * 240.00197 * 2 1 3 30 30 H 1.08995 * 109.47359 * 120.00151 * 2 1 3 31 31 H 0.97003 * 120.00531 * 179.97438 * 7 6 4 32 32 H 1.08998 * 109.47268 * 329.99670 * 12 3 2 33 33 H 1.09000 * 109.46817 * 209.99698 * 12 3 2 34 34 H 1.09004 * 109.47417 * 60.00116 * 13 12 3 35 35 H 1.09000 * 109.47014 * 299.99402 * 13 12 3 36 36 H 1.09004 * 109.46726 * 59.99994 * 14 13 12 37 37 H 1.08993 * 109.47381 * 300.00257 * 14 13 12 38 38 H 0.97001 * 119.99940 * 0.02562 * 15 14 13 39 39 H 1.09001 * 110.46912 * 98.41985 * 20 18 16 40 40 H 1.09001 * 110.60474 * 335.84809 * 20 18 16 41 41 H 1.09000 * 109.46885 * 269.97507 * 24 23 21 42 42 H 1.09006 * 109.47123 * 29.96976 * 24 23 21 43 43 H 1.09001 * 109.47722 * 149.97271 * 24 23 21 44 44 H 1.08995 * 110.25239 * 101.98336 * 25 23 21 45 45 H 1.09007 * 110.25117 * 223.90172 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3287 1.9978 -1.1827 5 1 2.1595 3.0580 -1.2996 6 6 2.8608 1.2600 -2.2312 7 7 3.4698 0.1183 -1.9902 8 14 2.7126 1.8875 -3.9844 9 1 3.3851 3.2067 -4.0965 10 1 3.3576 0.9233 -4.9115 11 1 1.2778 2.0317 -4.3390 12 6 2.1746 2.1029 1.2654 13 6 3.5853 1.8746 1.8118 14 6 3.7487 2.6288 3.1330 15 7 5.0993 2.4097 3.6565 16 6 5.4725 2.9813 4.8186 17 8 4.6901 3.6767 5.4312 18 6 6.8620 2.7564 5.3568 19 1 7.6145 3.0523 4.6258 20 6 7.0587 1.2828 5.7902 21 6 7.9217 1.3721 7.0294 22 8 8.5341 0.4462 7.5178 23 7 7.9114 2.6273 7.5105 24 6 8.6504 3.0637 8.6977 25 6 7.0651 3.5045 6.6931 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 3.8412 -0.3975 -2.7229 32 1 1.4424 1.7370 1.9852 33 1 2.0180 3.1685 1.0976 34 1 4.3175 2.2406 1.0919 35 1 3.7419 0.8090 1.9795 36 1 3.0166 2.2631 3.8530 37 1 3.5922 3.6942 2.9649 38 1 5.7252 1.8538 3.1664 39 1 7.5702 0.7207 5.0088 40 1 6.0999 0.8209 6.0255 41 1 8.0242 2.9398 9.5813 42 1 9.5532 2.4623 8.8051 43 1 8.9237 4.1134 8.5903 44 1 6.1055 3.6672 7.1838 45 1 7.5657 4.4571 6.5197 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752188470.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:44:25 Heat of formation + Delta-G solvation = -78.375035 kcal Electronic energy + Delta-G solvation = -23841.349719 eV Core-core repulsion = 20279.320383 eV Total energy + Delta-G solvation = -3562.029336 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.84646 -40.31656 -38.15635 -37.40829 -36.22034 -34.17110 -33.58305 -32.49542 -30.39783 -28.82779 -27.99406 -26.84715 -25.20948 -23.93324 -22.84837 -21.75356 -20.96224 -20.60045 -18.60647 -18.54836 -17.88148 -17.10064 -16.86266 -16.60406 -16.58130 -16.23504 -15.75120 -15.58272 -15.12325 -14.74948 -14.73720 -14.48142 -14.27014 -14.03243 -13.85147 -13.39775 -13.24169 -13.20199 -13.13339 -12.74504 -12.72417 -12.49067 -12.43279 -12.37218 -12.30116 -12.04810 -11.79626 -11.46868 -11.33695 -11.24403 -10.81816 -10.46475 -10.06913 -9.79183 -8.57125 -7.79360 -5.35493 1.42041 1.48263 1.51756 1.54876 1.57216 1.89502 2.24023 2.54475 3.16141 3.28059 3.32095 3.68649 3.74115 3.86044 4.14154 4.20102 4.34677 4.36076 4.42111 4.55478 4.58637 4.60186 4.63814 4.73781 4.76237 4.84395 4.86971 4.91788 4.92992 4.98163 5.03760 5.18568 5.38940 5.44386 5.44923 5.54645 5.57867 5.71168 5.92669 5.97494 6.50034 6.54183 7.02048 7.19423 7.21170 7.92715 8.42496 9.17346 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.023678 B = 0.002551 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.268617 B =10973.692640 C =11126.783305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.135 3.865 3 N -0.601 5.601 4 C -0.261 4.261 5 H 0.056 0.944 6 C -0.038 4.038 7 N -0.915 5.915 8 Si 0.952 3.048 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.283 1.283 12 C 0.147 3.853 13 C -0.126 4.126 14 C 0.133 3.867 15 N -0.714 5.714 16 C 0.526 3.474 17 O -0.575 6.575 18 C -0.112 4.112 19 H 0.149 0.851 20 C -0.139 4.139 21 C 0.511 3.489 22 O -0.578 6.578 23 N -0.621 5.621 24 C 0.089 3.911 25 C 0.117 3.883 26 H 0.047 0.953 27 H 0.031 0.969 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.026 0.974 31 H 0.250 0.750 32 H 0.053 0.947 33 H 0.045 0.955 34 H 0.048 0.952 35 H 0.052 0.948 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.414 0.586 39 H 0.130 0.870 40 H 0.108 0.892 41 H 0.060 0.940 42 H 0.067 0.933 43 H 0.102 0.898 44 H 0.080 0.920 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.777 6.227 16.013 18.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.009 3.991 3 N -0.322 5.322 4 C -0.392 4.392 5 H 0.074 0.926 6 C -0.235 4.235 7 N -0.560 5.560 8 Si 0.781 3.219 9 H -0.202 1.202 10 H -0.221 1.221 11 H -0.210 1.210 12 C 0.021 3.979 13 C -0.167 4.167 14 C 0.008 3.992 15 N -0.365 5.365 16 C 0.312 3.688 17 O -0.455 6.455 18 C -0.134 4.134 19 H 0.167 0.833 20 C -0.179 4.179 21 C 0.299 3.701 22 O -0.458 6.458 23 N -0.354 5.354 24 C -0.052 4.052 25 C -0.005 4.005 26 H 0.066 0.934 27 H 0.050 0.950 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.045 0.955 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.250 0.750 39 H 0.149 0.851 40 H 0.126 0.874 41 H 0.079 0.921 42 H 0.085 0.915 43 H 0.120 0.880 44 H 0.098 0.902 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 7.636 6.186 16.659 19.342 hybrid contribution 0.201 -0.214 -1.298 1.330 sum 7.836 5.972 15.362 18.250 Atomic orbital electron populations 1.22150 0.98600 1.00137 1.00211 1.20886 0.91607 0.86112 1.00495 1.44107 1.74361 1.12093 1.01638 1.19236 1.34989 0.93899 0.91053 0.92598 1.25670 0.97446 0.98367 1.02012 1.70087 1.37718 1.16875 1.31281 0.85590 0.77649 0.77578 0.81123 1.20196 1.22062 1.20955 1.20909 0.93710 0.95984 0.87340 1.22141 1.00598 0.99410 0.94522 1.21240 0.83290 1.00040 0.94615 1.46039 1.15840 1.51362 1.23284 1.20431 0.89171 0.78760 0.80427 1.90705 1.55040 1.40345 1.59419 1.22264 0.95464 0.96346 0.99298 0.83342 1.22370 1.01861 0.96603 0.97098 1.21190 0.80681 0.82242 0.85958 1.90711 1.47546 1.41856 1.65724 1.48369 1.47731 1.10155 1.29142 1.21747 0.95880 1.02077 0.85483 1.22077 0.95788 0.93864 0.88805 0.93385 0.94985 0.92516 0.91532 0.95548 0.94057 0.92813 0.93700 0.93271 0.92931 0.91749 0.92009 0.74997 0.85149 0.87425 0.92114 0.91469 0.87985 0.90199 0.87089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.80 10.24 71.98 0.74 -5.06 16 2 C 0.13 6.09 5.97 86.38 0.52 6.61 16 3 N -0.60 -28.10 2.45 -702.00 -1.72 -29.82 16 4 C -0.26 -13.62 9.49 84.03 0.80 -12.83 16 5 H 0.06 2.92 7.92 -2.91 -0.02 2.89 16 6 C -0.04 -2.01 4.93 84.86 0.42 -1.60 16 7 N -0.92 -50.99 11.32 21.65 0.25 -50.74 16 8 Si 0.95 43.16 29.61 68.60 2.03 45.19 16 9 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 10 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 11 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 12 C 0.15 5.53 5.69 86.38 0.49 6.02 16 13 C -0.13 -4.13 5.65 30.60 0.17 -3.96 16 14 C 0.13 3.48 5.67 86.38 0.49 3.97 16 15 N -0.71 -15.06 5.56 -463.05 -2.57 -17.63 16 16 C 0.53 10.92 7.07 87.66 0.62 11.54 16 17 O -0.58 -16.27 15.50 -3.04 -0.05 -16.31 16 18 C -0.11 -1.53 3.55 -10.40 -0.04 -1.56 16 19 H 0.15 1.22 8.14 -2.38 -0.02 1.20 16 20 C -0.14 -2.15 6.41 30.66 0.20 -1.95 16 21 C 0.51 11.02 8.02 87.90 0.71 11.73 16 22 O -0.58 -17.49 17.59 -3.03 -0.05 -17.54 16 23 N -0.62 -10.29 3.33 -842.90 -2.81 -13.10 16 24 C 0.09 1.10 10.96 127.77 1.40 2.50 16 25 C 0.12 1.62 6.70 86.84 0.58 2.20 16 26 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.03 1.30 8.14 -2.38 -0.02 1.28 16 28 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.07 3.49 5.32 -2.38 -0.01 3.48 16 30 H 0.03 1.12 8.10 -2.39 -0.02 1.10 16 31 H 0.25 13.61 8.31 -92.71 -0.77 12.84 16 32 H 0.05 1.83 8.07 -2.39 -0.02 1.81 16 33 H 0.04 1.67 8.04 -2.39 -0.02 1.65 16 34 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.41 7.15 8.47 -92.71 -0.79 6.37 16 39 H 0.13 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.11 1.76 7.90 -2.39 -0.02 1.74 16 41 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.07 0.97 7.93 -2.38 -0.02 0.95 16 43 H 0.10 0.66 8.14 -2.39 -0.02 0.65 16 44 H 0.08 1.39 6.96 -2.39 -0.02 1.37 16 45 H 0.11 1.01 8.14 -2.38 -0.02 0.99 16 Total: -1.00 -69.83 371.79 2.34 -67.48 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: 0.18 Total: 14.87 kcal Atomic # 6 Polarization: 10.51 SS G_CDS: 7.09 Total: 17.60 kcal Atomic # 7 Polarization: -104.43 SS G_CDS: -6.86 Total: -111.29 kcal Atomic # 8 Polarization: -33.76 SS G_CDS: -0.10 Total: -33.86 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -69.83 2.34 -67.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752188470.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.892 kcal (2) G-P(sol) polarization free energy of solvation -69.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds