Wall clock time and date at job start Fri Apr 10 2020 17:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47212 * 2 1 4 4 C 1.34771 * 119.99622 * 179.97438 * 3 2 1 5 5 O 1.21280 * 120.00597 * 0.02562 * 4 3 2 6 6 C 1.50701 * 119.99622 * 179.97438 * 4 3 2 7 7 C 1.50703 * 109.47064 * 180.02562 * 6 4 3 8 8 O 1.21273 * 119.99963 * 0.02562 * 7 6 4 9 9 N 1.34779 * 119.99944 * 180.02562 * 7 6 4 10 10 C 1.46928 * 120.62903 * 359.97438 * 9 7 6 11 11 C 1.53196 * 108.77001 * 126.37318 * 10 9 7 12 12 C 1.53042 * 109.31748 * 54.63430 * 11 10 9 13 13 C 1.53041 * 109.53437 * 298.63953 * 12 11 10 14 14 H 1.09002 * 109.49444 * 301.40247 * 13 12 11 15 15 C 1.53009 * 109.49462 * 181.34698 * 13 12 11 16 16 N 1.46500 * 109.46917 * 174.99731 * 15 13 12 17 17 C 1.36939 * 119.99334 * 179.97438 * 16 15 13 18 18 H 1.07993 * 120.00353 * 359.97438 * 17 16 15 19 19 C 1.38818 * 119.99549 * 179.97438 * 17 16 15 20 20 N 1.31617 * 119.99649 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99921 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.47390 * 59.99790 * 21 19 17 23 23 H 1.48505 * 109.46849 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46817 * 299.99626 * 21 19 17 25 25 C 1.46924 * 120.62834 * 179.72118 * 9 7 6 26 26 H 1.08998 * 109.47533 * 59.99637 * 1 2 3 27 27 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 300.00008 * 1 2 3 29 29 H 1.09002 * 109.47153 * 239.99992 * 2 1 3 30 30 H 1.09001 * 109.46832 * 120.00183 * 2 1 3 31 31 H 0.96996 * 119.99606 * 0.02562 * 3 2 1 32 32 H 1.09001 * 109.47380 * 300.00190 * 6 4 3 33 33 H 1.09002 * 109.47060 * 60.00278 * 6 4 3 34 34 H 1.08997 * 109.58962 * 246.15272 * 10 9 7 35 35 H 1.08994 * 109.58855 * 6.44508 * 10 9 7 36 36 H 1.08997 * 109.49894 * 174.58679 * 11 10 9 37 37 H 1.09001 * 109.49710 * 294.68193 * 11 10 9 38 38 H 1.09003 * 109.45613 * 58.65287 * 12 11 10 39 39 H 1.08994 * 109.46235 * 178.62637 * 12 11 10 40 40 H 1.08998 * 109.46767 * 295.00017 * 15 13 12 41 41 H 1.08994 * 109.47002 * 54.99617 * 15 13 12 42 42 H 0.96998 * 119.99829 * 359.97438 * 16 15 13 43 43 H 0.97004 * 119.99599 * 179.97438 * 20 19 17 44 44 H 1.08991 * 109.58859 * 353.41682 * 25 9 7 45 45 H 1.09000 * 109.58813 * 113.84693 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 3.3434 1.6274 0.0005 5 8 4.1315 0.7056 0.0005 6 6 3.8457 3.0482 -0.0001 7 6 5.3528 3.0482 0.0001 8 8 5.9591 1.9979 0.0001 9 7 6.0267 4.2154 0.0001 10 6 5.3061 5.4958 -0.0005 11 6 5.8134 6.3476 1.1675 12 6 7.3349 6.4825 1.0722 13 6 7.9785 5.0974 1.1690 14 1 7.6939 4.6291 2.1112 15 6 9.5010 5.2364 1.1074 16 7 10.1200 3.9257 1.3197 17 6 11.4838 3.8025 1.3070 18 1 12.1030 4.6714 1.1401 19 6 12.0704 2.5606 1.5086 20 7 11.3157 1.5017 1.7125 21 14 13.9307 2.3926 1.4920 22 1 14.5141 3.2426 2.5607 23 1 14.3018 0.9745 1.7303 24 1 14.4551 2.8270 0.1723 25 6 7.4958 4.2315 0.0064 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3635 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.3880 2.1185 0.0004 32 1 3.4829 3.5616 -0.8905 33 1 3.4820 3.5626 0.8895 34 1 5.4891 6.0177 -0.9397 35 1 4.2376 5.3139 0.1143 36 1 5.3570 7.3363 1.1219 37 1 5.5491 5.8674 2.1096 38 1 7.5998 6.9402 0.1191 39 1 7.6958 7.1083 1.8883 40 1 9.7914 5.6214 0.1300 41 1 9.8346 5.9256 1.8831 42 1 9.5638 3.1452 1.4692 43 1 11.7256 0.6338 1.8530 44 1 7.8719 3.2158 0.1282 45 1 7.8607 4.6484 -0.9323 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752796270.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:44:44 Heat of formation + Delta-G solvation = -65.230921 kcal Electronic energy + Delta-G solvation = -24430.162328 eV Core-core repulsion = 20868.702963 eV Total energy + Delta-G solvation = -3561.459365 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.45465 -39.22888 -37.33195 -35.33003 -34.84052 -32.92378 -31.71115 -31.55714 -30.06462 -29.24437 -25.47022 -25.24002 -23.26214 -23.05694 -21.42151 -21.03411 -19.98511 -18.81397 -17.60438 -16.99144 -16.52638 -16.14629 -15.86196 -15.40232 -15.19404 -14.66199 -14.55758 -14.20505 -13.85473 -13.65488 -13.43618 -13.19482 -12.95174 -12.86810 -12.73230 -12.51729 -12.26990 -12.14420 -12.04122 -11.67322 -11.48500 -11.06737 -10.96625 -10.76750 -10.59156 -10.36309 -10.22354 -10.01404 -9.88844 -9.54026 -9.22090 -9.21729 -8.78044 -8.38094 -6.81613 -5.63635 -2.93884 2.58990 2.74889 2.90478 3.34539 3.51561 3.55088 3.57402 4.36612 4.56157 4.65344 4.72263 4.76758 4.78745 4.88818 4.98877 5.00479 5.03765 5.06053 5.27175 5.37431 5.44996 5.50843 5.60776 5.68596 5.70274 5.72925 5.84291 5.87889 6.01580 6.14055 6.18253 6.26080 6.27600 6.45462 6.63013 6.74424 6.84089 6.94661 7.31037 7.59850 7.78883 8.18549 8.48752 8.53729 9.64371 10.22889 10.56972 11.58438 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.016187 B = 0.003366 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.394054 B = 8315.368439 C = 9859.807447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.114 3.886 3 N -0.740 5.740 4 C 0.507 3.493 5 O -0.485 6.485 6 C -0.163 4.163 7 C 0.507 3.493 8 O -0.484 6.484 9 N -0.616 5.616 10 C 0.107 3.893 11 C -0.134 4.134 12 C -0.112 4.112 13 C -0.108 4.108 14 H 0.073 0.927 15 C 0.161 3.839 16 N -0.733 5.733 17 C -0.244 4.244 18 H 0.069 0.931 19 C -0.013 4.013 20 N -0.928 5.928 21 Si 0.907 3.093 22 H -0.287 1.287 23 H -0.291 1.291 24 H -0.286 1.286 25 C 0.123 3.877 26 H 0.060 0.940 27 H 0.073 0.927 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.397 0.603 32 H 0.117 0.883 33 H 0.118 0.882 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.019 0.981 41 H 0.021 0.979 42 H 0.385 0.615 43 H 0.256 0.744 44 H 0.103 0.897 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.093 9.103 -4.090 27.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.009 4.009 3 N -0.396 5.396 4 C 0.291 3.709 5 O -0.355 6.355 6 C -0.206 4.206 7 C 0.292 3.708 8 O -0.355 6.355 9 N -0.352 5.352 10 C -0.017 4.017 11 C -0.172 4.172 12 C -0.150 4.150 13 C -0.127 4.127 14 H 0.091 0.909 15 C 0.033 3.967 16 N -0.378 5.378 17 C -0.375 4.375 18 H 0.087 0.913 19 C -0.209 4.209 20 N -0.576 5.576 21 Si 0.738 3.262 22 H -0.214 1.214 23 H -0.217 1.217 24 H -0.213 1.213 25 C 0.001 3.999 26 H 0.079 0.921 27 H 0.092 0.908 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.230 0.770 32 H 0.135 0.865 33 H 0.136 0.864 34 H 0.086 0.914 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.037 0.963 41 H 0.038 0.962 42 H 0.220 0.780 43 H 0.066 0.934 44 H 0.121 0.879 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -24.970 7.792 -4.109 26.478 hybrid contribution 0.421 0.206 0.099 0.479 sum -24.549 7.998 -4.010 26.128 Atomic orbital electron populations 1.21995 0.94548 1.03204 1.02351 1.21264 0.93959 0.83095 1.02598 1.46037 1.06900 1.08752 1.77879 1.20097 0.82245 0.91016 0.77544 1.90916 1.54267 1.45395 1.44969 1.21622 0.96097 0.96822 1.06027 1.19891 0.88698 0.83996 0.78212 1.90928 1.68921 1.29897 1.45773 1.48182 1.07551 1.05063 1.74400 1.21713 0.96066 0.84829 0.99043 1.21917 0.97069 0.99602 0.98648 1.21515 0.94027 0.97228 1.02246 1.21621 0.96969 0.95058 0.99070 0.90865 1.20625 0.88580 0.89824 0.97685 1.42417 1.04239 1.04252 1.86883 1.19149 0.83004 0.93631 1.41702 0.91311 1.24774 0.97680 0.95705 1.02774 1.69673 1.33769 0.98843 1.55352 0.86281 0.85663 0.76590 0.77699 1.21365 1.21715 1.21311 1.21600 0.77111 1.03323 0.97871 0.92064 0.90840 0.92026 0.91536 0.91488 0.76965 0.86462 0.86392 0.91420 0.90375 0.90978 0.91540 0.91781 0.91577 0.96322 0.96155 0.78028 0.93407 0.87861 0.91784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.78 10.03 37.16 0.37 -0.41 16 2 C 0.11 0.96 6.39 -4.04 -0.03 0.93 16 3 N -0.74 -6.22 5.56 -60.29 -0.33 -6.56 16 4 C 0.51 6.54 7.82 -10.99 -0.09 6.46 16 5 O -0.48 -9.39 14.18 -18.96 -0.27 -9.66 16 6 C -0.16 -1.61 4.53 -29.03 -0.13 -1.74 16 7 C 0.51 8.08 7.69 -10.98 -0.08 7.99 16 8 O -0.48 -10.85 13.59 -18.95 -0.26 -11.10 16 9 N -0.62 -8.66 2.98 -173.02 -0.52 -9.17 16 10 C 0.11 0.96 6.35 -3.71 -0.02 0.94 16 11 C -0.13 -1.23 6.08 -26.61 -0.16 -1.39 16 12 C -0.11 -1.35 5.17 -26.69 -0.14 -1.49 16 13 C -0.11 -1.79 2.36 -90.70 -0.21 -2.01 16 14 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 15 C 0.16 3.33 5.66 -4.04 -0.02 3.31 16 16 N -0.73 -19.59 5.38 -59.91 -0.32 -19.91 16 17 C -0.24 -7.14 9.99 -15.06 -0.15 -7.29 16 18 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 19 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 20 N -0.93 -29.92 13.06 55.49 0.72 -29.19 16 21 Si 0.91 23.41 29.55 -169.99 -5.02 18.38 16 22 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 23 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 25 C 0.12 2.14 5.50 -3.92 -0.02 2.12 16 26 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 27 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.40 1.81 8.47 -40.82 -0.35 1.47 16 32 H 0.12 0.73 7.94 -51.93 -0.41 0.32 16 33 H 0.12 0.78 7.69 -51.93 -0.40 0.38 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.45 5.93 -51.93 -0.31 0.14 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.39 11.09 6.89 -40.82 -0.28 10.81 16 43 H 0.26 8.00 8.31 -40.82 -0.34 7.66 16 44 H 0.10 2.31 6.20 -51.93 -0.32 1.99 16 45 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 361.94 15.07 5.45 5.45 Total: -1.00 -39.91 361.94 -8.86 -48.77 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -7.53 Total: 6.06 kcal Atomic # 6 Polarization: 7.71 SS G_CDS: -0.78 Total: 6.92 kcal Atomic # 7 Polarization: -64.39 SS G_CDS: -0.45 Total: -64.84 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: -0.53 Total: -20.76 kcal Atomic # 14 Polarization: 23.41 SS G_CDS: -5.02 Total: 18.38 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -39.91 -8.86 -48.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752796270.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.458 kcal (2) G-P(sol) polarization free energy of solvation -39.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds