Wall clock time and date at job start Fri Apr 10 2020 17:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36940 * 119.99945 * 2 1 4 4 H 1.08004 * 119.99499 * 203.04965 * 3 2 1 5 5 C 1.38808 * 120.00092 * 23.04617 * 3 2 1 6 6 N 1.31617 * 119.99848 * 12.93192 * 5 3 2 7 7 Si 1.86797 * 120.00130 * 192.92743 * 5 3 2 8 8 H 1.48498 * 109.47094 * 90.00472 * 7 5 3 9 9 H 1.48500 * 109.47242 * 210.00330 * 7 5 3 10 10 H 1.48499 * 109.47133 * 330.00089 * 7 5 3 11 11 C 1.46495 * 120.00169 * 180.02562 * 2 1 3 12 12 C 1.53004 * 109.47572 * 89.99164 * 11 2 1 13 13 N 1.46498 * 109.47243 * 180.02562 * 12 11 2 14 14 C 1.34777 * 119.99890 * 180.02562 * 13 12 11 15 15 O 1.21285 * 119.99712 * 0.02562 * 14 13 12 16 16 C 1.50701 * 119.99892 * 179.97438 * 14 13 12 17 17 H 1.08998 * 109.63168 * 299.99826 * 16 14 13 18 18 C 1.53060 * 109.63132 * 179.60435 * 16 14 13 19 19 C 1.51790 * 110.74693 * 155.38484 * 18 16 14 20 20 C 1.51773 * 113.81140 * 66.80225 * 19 18 16 21 21 C 1.52982 * 110.88694 * 293.00377 * 20 19 18 22 22 N 1.47193 * 108.66820 * 86.46408 * 21 20 19 23 23 C 1.46493 * 119.78890 * 108.04308 * 22 21 20 24 24 C 1.33296 * 120.40469 * 287.79896 * 22 21 20 25 25 O 1.21278 * 119.83673 * 180.46630 * 24 22 21 26 26 H 1.09003 * 109.46987 * 275.12204 * 1 2 3 27 27 H 1.08998 * 109.47289 * 35.12041 * 1 2 3 28 28 H 1.08999 * 109.47214 * 155.12513 * 1 2 3 29 29 H 0.97002 * 120.00381 * 179.97438 * 6 5 3 30 30 H 1.08993 * 109.47498 * 210.00083 * 11 2 1 31 31 H 1.09005 * 109.47188 * 329.99689 * 11 2 1 32 32 H 1.08992 * 109.47096 * 300.00546 * 12 11 2 33 33 H 1.09005 * 109.46435 * 60.00064 * 12 11 2 34 34 H 0.96995 * 120.00055 * 359.97438 * 13 12 11 35 35 H 1.09000 * 109.22406 * 275.70745 * 18 16 14 36 36 H 1.09009 * 109.22371 * 35.09898 * 18 16 14 37 37 H 1.08997 * 108.61781 * 187.93105 * 19 18 16 38 38 H 1.08998 * 108.61197 * 305.82789 * 19 18 16 39 39 H 1.09009 * 109.19473 * 53.36001 * 20 19 18 40 40 H 1.09005 * 109.19850 * 172.68528 * 20 19 18 41 41 H 1.09004 * 109.60853 * 206.22158 * 21 20 19 42 42 H 1.09010 * 109.60576 * 326.54614 * 21 20 19 43 43 H 1.08995 * 109.47345 * 90.00311 * 23 22 21 44 44 H 1.09003 * 109.47583 * 210.00590 * 23 22 21 45 45 H 1.09004 * 109.47329 * 330.00271 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1650 1.2232 -0.3662 5 6 1.5387 2.3401 0.4706 6 7 0.4119 2.2597 1.1459 7 14 2.3159 4.0073 0.1456 8 1 1.7987 4.5534 -1.1348 9 1 1.9760 4.9363 1.2531 10 1 3.7909 3.8577 0.0602 11 6 2.1975 -1.2687 -0.0006 12 6 2.4524 -1.7099 -1.4433 13 7 3.1844 -2.9789 -1.4437 14 6 3.5216 -3.5619 -2.6112 15 8 3.2194 -3.0356 -3.6613 16 6 4.2751 -4.8670 -2.6117 17 1 5.2280 -4.7399 -2.0981 18 6 4.5239 -5.3166 -4.0534 19 6 5.7335 -6.2303 -4.1306 20 6 5.5384 -7.5652 -3.4354 21 6 5.4109 -7.3788 -1.9224 22 7 4.0015 -7.1039 -1.5987 23 6 3.1959 -8.1271 -0.9278 24 6 3.4553 -5.9280 -1.9080 25 8 2.2955 -5.7093 -1.6289 26 1 -0.3633 0.0918 1.0236 27 1 -0.3634 0.8406 -0.5912 28 1 -0.3633 -0.9323 -0.4323 29 1 -0.0150 3.0661 1.4751 30 1 3.1498 -1.1386 0.5133 31 1 1.6084 -2.0286 0.5130 32 1 1.5000 -1.8400 -1.9570 33 1 3.0414 -0.9500 -1.9568 34 1 3.4270 -3.3991 -0.6039 35 1 3.6469 -5.8507 -4.4193 36 1 4.6965 -4.4400 -4.6780 37 1 5.9640 -6.4146 -5.1799 38 1 6.5826 -5.7227 -3.6729 39 1 4.6330 -8.0384 -3.8157 40 1 6.3938 -8.2074 -3.6459 41 1 5.7325 -8.2875 -1.4134 42 1 6.0319 -6.5416 -1.6034 43 1 3.2792 -8.0048 0.1521 44 1 2.1528 -8.0216 -1.2260 45 1 3.5563 -9.1163 -1.2103 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753071019.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:44:51 Heat of formation + Delta-G solvation = -50.623762 kcal Electronic energy + Delta-G solvation = -24780.439598 eV Core-core repulsion = 21219.613647 eV Total energy + Delta-G solvation = -3560.825951 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.06573 -38.94260 -37.05772 -36.02592 -34.81291 -34.06460 -31.73146 -31.15626 -28.96166 -27.98213 -26.13097 -25.75872 -24.33885 -23.08895 -21.07022 -20.69548 -20.51506 -18.98229 -17.79189 -17.36732 -16.62710 -16.09457 -15.79696 -15.43860 -15.00167 -14.64829 -14.55588 -14.31130 -13.96776 -13.67720 -13.54320 -13.18481 -13.11386 -12.98806 -12.66299 -12.36160 -12.27674 -12.21446 -11.87286 -11.40183 -11.15607 -11.10641 -11.01345 -10.82875 -10.80954 -10.53765 -10.27319 -9.95928 -9.90289 -9.87888 -9.63975 -9.05193 -8.59074 -8.51116 -6.73933 -5.69092 -3.17178 2.37640 2.46480 3.00295 3.40424 3.43184 3.48347 3.49826 4.14631 4.27883 4.34083 4.48956 4.56226 4.67788 4.87647 4.93621 4.97067 5.01958 5.15239 5.21815 5.30295 5.44503 5.50349 5.51995 5.61272 5.67983 5.70021 5.89484 5.92023 6.00134 6.01915 6.09590 6.35532 6.70187 6.73841 6.85860 6.97350 6.99785 7.43330 7.77082 7.82157 7.84578 7.90486 8.41761 8.49607 9.26327 9.88985 10.37893 11.35680 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.027100 B = 0.003054 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.968591 B = 9165.368658 C = 9705.916732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.597 5.597 3 C -0.258 4.258 4 H 0.069 0.931 5 C 0.003 3.997 6 N -0.907 5.907 7 Si 0.906 3.094 8 H -0.287 1.287 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.144 3.856 12 C 0.097 3.903 13 N -0.710 5.710 14 C 0.532 3.468 15 O -0.539 6.539 16 C -0.129 4.129 17 H 0.117 0.883 18 C -0.099 4.099 19 C -0.122 4.122 20 C -0.142 4.142 21 C 0.107 3.893 22 N -0.612 5.612 23 C 0.083 3.917 24 C 0.522 3.478 25 O -0.525 6.525 26 H 0.033 0.967 27 H 0.042 0.958 28 H 0.000 1.000 29 H 0.253 0.747 30 H 0.051 0.949 31 H 0.041 0.959 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.395 0.605 35 H 0.069 0.931 36 H 0.095 0.905 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.078 0.922 41 H 0.088 0.912 42 H 0.079 0.921 43 H 0.057 0.943 44 H 0.078 0.922 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.950 -24.230 -5.991 28.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.320 5.320 3 C -0.388 4.388 4 H 0.087 0.913 5 C -0.196 4.196 6 N -0.551 5.551 7 Si 0.736 3.264 8 H -0.214 1.214 9 H -0.218 1.218 10 H -0.205 1.205 11 C 0.016 3.984 12 C -0.029 4.029 13 N -0.359 5.359 14 C 0.315 3.685 15 O -0.416 6.416 16 C -0.153 4.153 17 H 0.135 0.865 18 C -0.137 4.137 19 C -0.160 4.160 20 C -0.181 4.181 21 C -0.016 4.016 22 N -0.346 5.346 23 C -0.060 4.060 24 C 0.308 3.692 25 O -0.400 6.400 26 H 0.051 0.949 27 H 0.060 0.940 28 H 0.018 0.982 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.228 0.772 35 H 0.087 0.913 36 H 0.113 0.887 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.096 0.904 41 H 0.106 0.894 42 H 0.097 0.903 43 H 0.076 0.924 44 H 0.097 0.903 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 11.952 -23.549 -6.484 27.193 hybrid contribution 0.539 0.634 0.284 0.880 sum 12.491 -22.915 -6.200 26.825 Atomic orbital electron populations 1.20836 0.82314 0.95649 0.99574 1.43781 1.01967 1.00300 1.85969 1.19212 0.98360 0.85564 1.35656 0.91337 1.25030 0.97871 0.98580 0.98078 1.70079 1.19429 1.27218 1.38414 0.86225 0.78744 0.83986 0.77400 1.21423 1.21756 1.20459 1.20832 0.96641 0.89127 0.91818 1.22403 0.95742 0.82718 1.02019 1.45911 1.57436 1.24860 1.07704 1.19654 0.79474 0.84994 0.84353 1.90690 1.54692 1.64943 1.31289 1.21770 1.00556 0.93110 0.99889 0.86508 1.21145 0.98763 1.00884 0.92903 1.21200 0.98083 0.95131 1.01577 1.21845 1.03085 0.98164 0.94957 1.21911 0.81284 1.02555 0.95817 1.47688 1.12338 1.14930 1.59638 1.21697 0.97065 0.90123 0.97069 1.20005 0.87673 0.82818 0.78693 1.90811 1.16863 1.79159 1.53217 0.94895 0.93972 0.98173 0.93729 0.93074 0.94034 0.92187 0.91559 0.77221 0.91270 0.88691 0.91068 0.91548 0.91098 0.90388 0.89376 0.90298 0.92437 0.90338 0.91212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.18 8.98 59.85 0.54 4.71 16 2 N -0.60 -15.67 2.92 -181.12 -0.53 -16.20 16 3 C -0.26 -7.31 9.65 -15.06 -0.15 -7.46 16 4 H 0.07 1.89 7.86 -52.48 -0.41 1.48 16 5 C 0.00 0.08 5.10 -17.43 -0.09 -0.01 16 6 N -0.91 -27.07 10.71 55.49 0.59 -26.48 16 7 Si 0.91 22.36 29.57 -169.99 -5.03 17.33 16 8 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 9 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 C 0.14 3.07 5.76 -4.04 -0.02 3.05 16 12 C 0.10 1.94 6.00 -4.04 -0.02 1.92 16 13 N -0.71 -11.74 5.16 -60.29 -0.31 -12.05 16 14 C 0.53 8.75 6.56 -10.98 -0.07 8.68 16 15 O -0.54 -10.88 15.50 5.55 0.09 -10.79 16 16 C -0.13 -1.47 2.22 -92.54 -0.21 -1.67 16 17 H 0.12 0.97 6.79 -51.93 -0.35 0.62 16 18 C -0.10 -0.99 4.80 -27.31 -0.13 -1.12 16 19 C -0.12 -0.75 5.28 -27.97 -0.15 -0.90 16 20 C -0.14 -0.69 5.74 -27.36 -0.16 -0.85 16 21 C 0.11 0.53 5.87 -3.67 -0.02 0.51 16 22 N -0.61 -5.16 2.85 -181.14 -0.52 -5.68 16 23 C 0.08 0.60 10.34 59.84 0.62 1.22 16 24 C 0.52 6.35 6.52 -11.29 -0.07 6.27 16 25 O -0.52 -8.71 15.35 5.56 0.09 -8.62 16 26 H 0.03 0.91 7.34 -51.93 -0.38 0.53 16 27 H 0.04 1.16 7.34 -51.93 -0.38 0.78 16 28 H 0.00 -0.01 8.03 -51.93 -0.42 -0.42 16 29 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 30 H 0.05 1.05 8.04 -51.93 -0.42 0.63 16 31 H 0.04 0.84 8.07 -51.93 -0.42 0.42 16 32 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 34 H 0.39 5.56 8.38 -40.82 -0.34 5.22 16 35 H 0.07 0.78 7.87 -51.93 -0.41 0.37 16 36 H 0.09 1.10 7.13 -51.92 -0.37 0.73 16 37 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.07 0.34 7.87 -51.93 -0.41 -0.07 16 39 H 0.07 0.43 8.05 -51.92 -0.42 0.02 16 40 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 41 H 0.09 0.25 7.92 -51.93 -0.41 -0.16 16 42 H 0.08 0.33 6.73 -51.92 -0.35 -0.02 16 43 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.08 0.73 7.39 -51.93 -0.38 0.34 16 45 H 0.07 0.31 8.03 -51.93 -0.42 -0.10 16 LS Contribution 358.06 15.07 5.40 5.40 Total: -1.00 -35.87 358.06 -7.69 -43.56 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -7.54 Total: -0.82 kcal Atomic # 6 Polarization: 14.28 SS G_CDS: 0.07 Total: 14.35 kcal Atomic # 7 Polarization: -59.64 SS G_CDS: -0.76 Total: -60.40 kcal Atomic # 8 Polarization: -19.59 SS G_CDS: 0.17 Total: -19.42 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.03 Total: 17.33 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.87 -7.69 -43.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753071019.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.063 kcal (2) G-P(sol) polarization free energy of solvation -35.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds