Wall clock time and date at job start Fri Apr 10 2020 17:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36940 * 119.99945 * 2 1 4 4 H 1.08004 * 119.99499 * 203.04965 * 3 2 1 5 5 C 1.38808 * 120.00092 * 23.04617 * 3 2 1 6 6 N 1.31617 * 119.99848 * 12.93192 * 5 3 2 7 7 Si 1.86797 * 120.00130 * 192.92743 * 5 3 2 8 8 H 1.48498 * 109.47094 * 90.00472 * 7 5 3 9 9 H 1.48500 * 109.47242 * 210.00330 * 7 5 3 10 10 H 1.48499 * 109.47133 * 330.00089 * 7 5 3 11 11 C 1.46495 * 120.00169 * 180.02562 * 2 1 3 12 12 C 1.53004 * 109.47572 * 89.99164 * 11 2 1 13 13 N 1.46498 * 109.47243 * 180.02562 * 12 11 2 14 14 C 1.34777 * 119.99890 * 180.02562 * 13 12 11 15 15 O 1.21285 * 119.99712 * 0.02562 * 14 13 12 16 16 C 1.50701 * 119.99892 * 179.97438 * 14 13 12 17 17 H 1.08998 * 109.63168 * 299.99826 * 16 14 13 18 18 C 1.53060 * 109.63132 * 179.60435 * 16 14 13 19 19 C 1.51790 * 110.74693 * 155.38484 * 18 16 14 20 20 C 1.51773 * 113.81140 * 66.80225 * 19 18 16 21 21 C 1.52982 * 110.88694 * 293.00377 * 20 19 18 22 22 N 1.47193 * 108.66820 * 86.46408 * 21 20 19 23 23 C 1.46493 * 119.78890 * 108.04308 * 22 21 20 24 24 C 1.33296 * 120.40469 * 287.79896 * 22 21 20 25 25 O 1.21278 * 119.83673 * 180.46630 * 24 22 21 26 26 H 1.09003 * 109.46987 * 275.12204 * 1 2 3 27 27 H 1.08998 * 109.47289 * 35.12041 * 1 2 3 28 28 H 1.08999 * 109.47214 * 155.12513 * 1 2 3 29 29 H 0.97002 * 120.00381 * 179.97438 * 6 5 3 30 30 H 1.08993 * 109.47498 * 210.00083 * 11 2 1 31 31 H 1.09005 * 109.47188 * 329.99689 * 11 2 1 32 32 H 1.08992 * 109.47096 * 300.00546 * 12 11 2 33 33 H 1.09005 * 109.46435 * 60.00064 * 12 11 2 34 34 H 0.96995 * 120.00055 * 359.97438 * 13 12 11 35 35 H 1.09000 * 109.22406 * 275.70745 * 18 16 14 36 36 H 1.09009 * 109.22371 * 35.09898 * 18 16 14 37 37 H 1.08997 * 108.61781 * 187.93105 * 19 18 16 38 38 H 1.08998 * 108.61197 * 305.82789 * 19 18 16 39 39 H 1.09009 * 109.19473 * 53.36001 * 20 19 18 40 40 H 1.09005 * 109.19850 * 172.68528 * 20 19 18 41 41 H 1.09004 * 109.60853 * 206.22158 * 21 20 19 42 42 H 1.09010 * 109.60576 * 326.54614 * 21 20 19 43 43 H 1.08995 * 109.47345 * 90.00311 * 23 22 21 44 44 H 1.09003 * 109.47583 * 210.00590 * 23 22 21 45 45 H 1.09004 * 109.47329 * 330.00271 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1650 1.2232 -0.3662 5 6 1.5387 2.3401 0.4706 6 7 0.4119 2.2597 1.1459 7 14 2.3159 4.0073 0.1456 8 1 1.7987 4.5534 -1.1348 9 1 1.9760 4.9363 1.2531 10 1 3.7909 3.8577 0.0602 11 6 2.1975 -1.2687 -0.0006 12 6 2.4524 -1.7099 -1.4433 13 7 3.1844 -2.9789 -1.4437 14 6 3.5216 -3.5619 -2.6112 15 8 3.2194 -3.0356 -3.6613 16 6 4.2751 -4.8670 -2.6117 17 1 5.2280 -4.7399 -2.0981 18 6 4.5239 -5.3166 -4.0534 19 6 5.7335 -6.2303 -4.1306 20 6 5.5384 -7.5652 -3.4354 21 6 5.4109 -7.3788 -1.9224 22 7 4.0015 -7.1039 -1.5987 23 6 3.1959 -8.1271 -0.9278 24 6 3.4553 -5.9280 -1.9080 25 8 2.2955 -5.7093 -1.6289 26 1 -0.3633 0.0918 1.0236 27 1 -0.3634 0.8406 -0.5912 28 1 -0.3633 -0.9323 -0.4323 29 1 -0.0150 3.0661 1.4751 30 1 3.1498 -1.1386 0.5133 31 1 1.6084 -2.0286 0.5130 32 1 1.5000 -1.8400 -1.9570 33 1 3.0414 -0.9500 -1.9568 34 1 3.4270 -3.3991 -0.6039 35 1 3.6469 -5.8507 -4.4193 36 1 4.6965 -4.4400 -4.6780 37 1 5.9640 -6.4146 -5.1799 38 1 6.5826 -5.7227 -3.6729 39 1 4.6330 -8.0384 -3.8157 40 1 6.3938 -8.2074 -3.6459 41 1 5.7325 -8.2875 -1.4134 42 1 6.0319 -6.5416 -1.6034 43 1 3.2792 -8.0048 0.1521 44 1 2.1528 -8.0216 -1.2260 45 1 3.5563 -9.1163 -1.2103 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753071019.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:44:50 Heat of formation + Delta-G solvation = -76.308774 kcal Electronic energy + Delta-G solvation = -24781.553383 eV Core-core repulsion = 21219.613647 eV Total energy + Delta-G solvation = -3561.939736 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.01309 -40.18813 -37.98213 -37.74387 -35.78945 -35.54117 -33.35412 -32.36916 -30.06629 -29.17760 -27.95794 -26.94085 -25.30066 -24.56438 -22.44505 -22.08681 -21.45089 -19.99679 -18.80573 -18.56413 -18.32487 -17.37785 -16.87398 -16.62537 -16.36487 -16.26730 -15.53078 -15.32633 -15.24155 -14.88806 -14.77681 -14.49129 -14.25617 -14.21264 -13.91145 -13.56094 -13.33624 -13.07397 -12.98668 -12.81730 -12.72107 -12.56428 -12.50216 -12.21369 -11.98998 -11.97608 -11.82384 -11.67175 -11.52914 -11.06900 -10.90475 -10.67815 -10.09999 -9.73551 -8.87142 -7.86212 -5.37699 1.37672 1.45496 1.48402 1.49198 1.56551 2.03354 2.17510 2.51462 3.27537 3.34240 3.49324 3.66369 3.77170 3.89371 4.08922 4.17125 4.18087 4.26629 4.32180 4.42148 4.47894 4.60554 4.64918 4.70563 4.77063 4.78778 4.95401 4.99485 5.03910 5.05821 5.07255 5.20857 5.25977 5.28474 5.44207 5.44796 5.52476 5.59197 5.64484 6.26458 6.28423 6.49340 7.04803 7.09682 7.17689 7.79322 8.24365 9.17489 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.027100 B = 0.003054 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.968591 B = 9165.368658 C = 9705.916732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.616 5.616 3 C -0.270 4.270 4 H 0.073 0.927 5 C -0.052 4.052 6 N -0.938 5.938 7 Si 0.973 3.027 8 H -0.288 1.288 9 H -0.291 1.291 10 H -0.265 1.265 11 C 0.149 3.851 12 C 0.118 3.882 13 N -0.703 5.703 14 C 0.524 3.476 15 O -0.583 6.583 16 C -0.118 4.118 17 H 0.157 0.843 18 C -0.095 4.095 19 C -0.118 4.118 20 C -0.137 4.137 21 C 0.097 3.903 22 N -0.601 5.601 23 C 0.079 3.921 24 C 0.518 3.482 25 O -0.582 6.582 26 H 0.013 0.987 27 H 0.016 0.984 28 H 0.024 0.976 29 H 0.250 0.750 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.034 0.966 33 H 0.047 0.953 34 H 0.409 0.591 35 H 0.047 0.953 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.056 0.944 40 H 0.108 0.892 41 H 0.120 0.880 42 H 0.094 0.906 43 H 0.064 0.936 44 H 0.050 0.950 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.174 -26.338 -5.785 31.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.339 5.339 3 C -0.400 4.400 4 H 0.091 0.909 5 C -0.247 4.247 6 N -0.584 5.584 7 Si 0.801 3.199 8 H -0.215 1.215 9 H -0.218 1.218 10 H -0.190 1.190 11 C 0.022 3.978 12 C -0.009 4.009 13 N -0.353 5.353 14 C 0.310 3.690 15 O -0.463 6.463 16 C -0.141 4.141 17 H 0.174 0.826 18 C -0.133 4.133 19 C -0.155 4.155 20 C -0.176 4.176 21 C -0.024 4.024 22 N -0.332 5.332 23 C -0.063 4.063 24 C 0.305 3.695 25 O -0.462 6.462 26 H 0.031 0.969 27 H 0.035 0.965 28 H 0.043 0.957 29 H 0.059 0.941 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.245 0.755 35 H 0.066 0.934 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.105 0.895 39 H 0.074 0.926 40 H 0.126 0.874 41 H 0.138 0.862 42 H 0.113 0.887 43 H 0.083 0.917 44 H 0.069 0.931 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 15.255 -25.745 -6.268 30.575 hybrid contribution -0.442 1.167 0.188 1.262 sum 14.813 -24.579 -6.080 29.334 Atomic orbital electron populations 1.20583 0.82741 0.95726 0.97992 1.44017 1.02158 1.01551 1.86181 1.19551 0.98676 0.86653 1.35149 0.90918 1.25848 0.98583 1.02077 0.98172 1.70236 1.20800 1.27819 1.39511 0.85184 0.78565 0.79409 0.76785 1.21549 1.21782 1.18954 1.20903 0.96865 0.87500 0.92494 1.21841 0.94629 0.83972 1.00456 1.45754 1.56989 1.23724 1.08844 1.20567 0.78858 0.86257 0.83301 1.90666 1.56410 1.66490 1.32748 1.21754 1.01083 0.89987 1.01320 0.82560 1.21136 0.99960 1.00806 0.91441 1.21196 0.96334 0.95217 1.02771 1.21828 1.03705 0.97499 0.94520 1.22321 0.78965 1.04801 0.96265 1.47816 1.13940 1.13586 1.57898 1.21830 0.95736 0.91322 0.97393 1.20083 0.86961 0.83947 0.78536 1.90790 1.19131 1.80416 1.55896 0.96888 0.96546 0.95746 0.94102 0.91820 0.92706 0.94739 0.93453 0.75522 0.93445 0.90650 0.90267 0.89520 0.92566 0.87361 0.86212 0.88746 0.91717 0.93075 0.87731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 9.28 8.98 127.77 1.15 10.43 16 2 N -0.62 -32.64 2.92 -726.95 -2.12 -34.76 16 3 C -0.27 -15.38 9.65 84.03 0.81 -14.57 16 4 H 0.07 3.99 7.86 -2.91 -0.02 3.97 16 5 C -0.05 -2.97 5.10 84.86 0.43 -2.54 16 6 N -0.94 -56.99 10.71 21.65 0.23 -56.76 16 7 Si 0.97 46.21 29.57 68.60 2.03 48.24 16 8 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 9 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 10 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 11 C 0.15 6.33 5.76 86.38 0.50 6.82 16 12 C 0.12 4.81 6.00 86.38 0.52 5.33 16 13 N -0.70 -23.16 5.16 -463.05 -2.39 -25.55 16 14 C 0.52 17.36 6.56 87.66 0.58 17.94 16 15 O -0.58 -24.38 15.50 -3.05 -0.05 -24.43 16 16 C -0.12 -2.52 2.22 -12.04 -0.03 -2.55 16 17 H 0.16 2.05 6.79 -2.39 -0.02 2.04 16 18 C -0.10 -1.83 4.80 30.22 0.15 -1.68 16 19 C -0.12 -1.07 5.28 29.79 0.16 -0.92 16 20 C -0.14 -0.77 5.74 30.18 0.17 -0.59 16 21 C 0.10 0.51 5.87 86.24 0.51 1.01 16 22 N -0.60 -8.59 2.85 -846.21 -2.41 -11.00 16 23 C 0.08 0.98 10.34 127.77 1.32 2.30 16 24 C 0.52 12.07 6.52 88.12 0.57 12.65 16 25 O -0.58 -19.64 15.35 -3.02 -0.05 -19.69 16 26 H 0.01 0.73 7.34 -2.39 -0.02 0.71 16 27 H 0.02 0.91 7.34 -2.39 -0.02 0.89 16 28 H 0.02 1.14 8.03 -2.39 -0.02 1.12 16 29 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 30 H 0.06 2.54 8.04 -2.39 -0.02 2.52 16 31 H 0.05 2.18 8.07 -2.38 -0.02 2.16 16 32 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.05 2.10 8.14 -2.38 -0.02 2.08 16 34 H 0.41 11.10 8.38 -92.71 -0.78 10.33 16 35 H 0.05 1.09 7.87 -2.39 -0.02 1.08 16 36 H 0.07 1.76 7.13 -2.38 -0.02 1.74 16 37 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.09 0.49 7.87 -2.39 -0.02 0.47 16 39 H 0.06 0.52 8.05 -2.38 -0.02 0.50 16 40 H 0.11 0.06 8.14 -2.38 -0.02 0.04 16 41 H 0.12 -0.03 7.92 -2.39 -0.02 -0.05 16 42 H 0.09 0.28 6.73 -2.38 -0.02 0.26 16 43 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.05 0.94 7.39 -2.39 -0.02 0.92 16 45 H 0.10 0.56 8.03 -2.38 -0.02 0.54 16 Total: -1.00 -81.66 358.06 2.27 -79.39 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: 0.20 Total: 10.94 kcal Atomic # 6 Polarization: 26.79 SS G_CDS: 6.83 Total: 33.62 kcal Atomic # 7 Polarization: -121.38 SS G_CDS: -6.69 Total: -128.07 kcal Atomic # 8 Polarization: -44.02 SS G_CDS: -0.09 Total: -44.12 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.24 kcal Total: -81.66 2.27 -79.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753071019.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.081 kcal (2) G-P(sol) polarization free energy of solvation -81.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds