Wall clock time and date at job start Fri Apr 10 2020 17:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46966 * 2 1 4 4 C 1.53002 * 109.46833 * 240.00110 * 2 1 3 5 5 N 1.46898 * 109.47132 * 65.00003 * 4 2 1 6 6 C 1.46895 * 111.00057 * 179.97438 * 5 4 2 7 7 C 1.50701 * 109.47427 * 180.02562 * 6 5 4 8 8 O 1.21288 * 119.99653 * 359.97438 * 7 6 5 9 9 N 1.34778 * 120.00069 * 180.02562 * 7 6 5 10 10 C 1.37096 * 120.00011 * 179.97438 * 9 7 6 11 11 H 1.07998 * 120.00006 * 359.97438 * 10 9 7 12 12 C 1.38952 * 120.00135 * 179.97438 * 10 9 7 13 13 N 1.31408 * 119.99851 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00031 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47016 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.46960 * 119.99861 * 14 12 10 17 17 H 1.48493 * 109.47347 * 240.00417 * 14 12 10 18 18 C 1.52997 * 109.46992 * 120.00238 * 2 1 3 19 19 N 1.46496 * 109.47194 * 294.99585 * 18 2 1 20 20 C 1.34777 * 120.00271 * 179.97438 * 19 18 2 21 21 O 1.21278 * 119.99854 * 0.02562 * 20 19 18 22 22 C 1.50703 * 120.00161 * 180.02562 * 20 19 18 23 23 C 1.53000 * 109.46912 * 180.02562 * 22 20 19 24 24 C 1.53003 * 117.49371 * 243.62054 * 23 22 20 25 25 C 1.53001 * 117.49608 * 175.00128 * 23 22 20 26 26 H 1.09002 * 109.47201 * 300.00138 * 1 2 3 27 27 H 1.09004 * 109.47134 * 59.99866 * 1 2 3 28 28 H 1.08993 * 109.47618 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46860 * 184.99980 * 4 2 1 30 30 H 1.09004 * 109.46934 * 305.00053 * 4 2 1 31 31 H 1.00898 * 111.00483 * 303.95469 * 5 4 2 32 32 H 1.09004 * 109.47187 * 300.00354 * 6 5 4 33 33 H 1.09008 * 109.47339 * 60.00115 * 6 5 4 34 34 H 0.97007 * 120.00119 * 359.97438 * 9 7 6 35 35 H 0.97004 * 119.99903 * 179.97438 * 13 12 10 36 36 H 1.09002 * 109.47045 * 174.99711 * 18 2 1 37 37 H 1.09001 * 109.47375 * 54.99636 * 18 2 1 38 38 H 0.97005 * 120.00266 * 0.02562 * 19 18 2 39 39 H 1.09002 * 109.47152 * 60.00245 * 22 20 19 40 40 H 1.09001 * 109.46980 * 300.00345 * 22 20 19 41 41 H 1.08995 * 115.55630 * 29.32739 * 23 22 20 42 42 H 1.08998 * 117.50656 * 0.02562 * 24 23 22 43 43 H 1.09001 * 117.49674 * 145.02590 * 24 23 22 44 44 H 1.09003 * 117.49710 * 214.97494 * 25 23 22 45 45 H 1.08998 * 117.50185 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.6513 0.0374 -2.4456 6 6 2.1256 -0.6264 -3.6672 7 6 1.7096 0.1793 -4.8708 8 8 1.0796 1.2055 -4.7253 9 7 2.0368 -0.2408 -6.1089 10 6 1.6580 0.4920 -7.2039 11 1 1.0969 1.4056 -7.0744 12 6 1.9957 0.0591 -8.4804 13 7 2.6788 -1.0524 -8.6379 14 14 1.4789 1.0572 -9.9724 15 1 0.7257 2.2575 -9.5282 16 1 2.6858 1.4816 -10.7262 17 1 0.6146 0.2263 -10.8486 18 6 2.0400 -0.7213 1.2492 19 7 1.6525 0.0353 2.4423 20 6 1.9956 -0.4137 3.6659 21 8 2.6255 -1.4438 3.7792 22 6 1.5965 0.3643 4.8933 23 6 2.1066 -0.3569 6.1425 24 6 1.0628 -0.8883 7.1271 25 6 1.9040 0.3369 7.4910 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1263 -0.7995 -1.2056 30 1 1.6053 -1.7198 -1.2952 31 1 0.6528 0.1794 -2.4753 32 1 3.2126 -0.7037 -3.6401 33 1 1.6919 -1.6245 -3.7301 34 1 2.5405 -1.0617 -6.2253 35 1 2.9143 -1.3548 -9.5290 36 1 3.1263 -0.7996 1.2055 37 1 1.6053 -1.7198 1.2951 38 1 1.1483 0.8591 2.3518 39 1 0.5101 0.4425 4.9366 40 1 2.0311 1.3629 4.8478 41 1 3.0166 -0.9417 6.0091 42 1 0.0128 -0.7244 6.8847 43 1 1.2862 -1.8229 7.6415 44 1 2.6807 0.2082 8.2449 45 1 1.4077 1.3073 7.4882 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753604788.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:45:02 Heat of formation + Delta-G solvation = -65.732261 kcal Electronic energy + Delta-G solvation = -22780.694728 eV Core-core repulsion = 19219.213623 eV Total energy + Delta-G solvation = -3561.481104 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.13125 -38.43586 -37.71151 -37.00405 -34.88376 -33.87034 -32.41141 -31.20136 -29.96928 -27.41931 -26.68212 -24.79343 -23.19492 -22.76372 -21.47448 -20.69682 -20.08977 -19.22285 -17.91375 -17.49155 -16.67165 -16.20178 -15.89677 -15.61697 -15.32522 -14.85574 -14.54172 -14.45444 -14.25421 -13.79516 -13.72271 -13.48484 -13.08754 -12.99486 -12.68599 -12.51365 -12.04376 -11.91077 -11.84699 -11.59392 -11.54854 -11.20751 -11.09490 -10.97824 -10.91139 -10.75842 -10.43239 -10.34736 -10.22963 -10.04440 -9.52512 -9.31321 -8.47028 -8.07203 -7.96336 -6.42163 -3.83021 2.39936 2.85951 3.16063 3.26633 3.33844 3.43075 3.90503 4.08663 4.26923 4.30984 4.34801 4.52224 4.69810 4.70343 4.77174 4.87028 5.01691 5.12580 5.13417 5.23533 5.25184 5.25585 5.35392 5.43084 5.49963 5.55298 5.59966 5.71283 5.71798 5.79015 5.84547 5.91167 5.98254 6.05256 6.12528 6.22657 6.26992 7.19693 7.22360 7.54985 7.65151 7.97267 8.06161 8.60815 9.17497 9.54023 10.05291 10.75629 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.062826 B = 0.001771 C = 0.001745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.568368 B =15806.575550 C =16040.352544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.102 4.102 3 H 0.089 0.911 4 C 0.066 3.934 5 N -0.669 5.669 6 C 0.050 3.950 7 C 0.441 3.559 8 O -0.584 6.584 9 N -0.564 5.564 10 C -0.300 4.300 11 H 0.104 0.896 12 C 0.022 3.978 13 N -0.901 5.901 14 Si 0.930 3.070 15 H -0.268 1.268 16 H -0.281 1.281 17 H -0.282 1.282 18 C 0.125 3.875 19 N -0.729 5.729 20 C 0.513 3.487 21 O -0.540 6.540 22 C -0.111 4.111 23 C -0.141 4.141 24 C -0.179 4.179 25 C -0.181 4.181 26 H 0.053 0.947 27 H 0.067 0.933 28 H 0.054 0.946 29 H 0.074 0.926 30 H 0.030 0.970 31 H 0.349 0.651 32 H 0.086 0.914 33 H 0.044 0.956 34 H 0.392 0.608 35 H 0.271 0.729 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.401 0.599 39 H 0.094 0.906 40 H 0.098 0.902 41 H 0.118 0.882 42 H 0.093 0.907 43 H 0.094 0.906 44 H 0.095 0.905 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.528 0.072 26.700 26.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.121 4.121 3 H 0.107 0.893 4 C -0.064 4.064 5 N -0.302 5.302 6 C -0.083 4.083 7 C 0.226 3.774 8 O -0.468 6.468 9 N -0.200 5.200 10 C -0.429 4.429 11 H 0.121 0.879 12 C -0.180 4.180 13 N -0.543 5.543 14 Si 0.757 3.243 15 H -0.192 1.192 16 H -0.207 1.207 17 H -0.208 1.208 18 C 0.000 4.000 19 N -0.381 5.381 20 C 0.300 3.700 21 O -0.417 6.417 22 C -0.151 4.151 23 C -0.160 4.160 24 C -0.216 4.216 25 C -0.218 4.218 26 H 0.072 0.928 27 H 0.086 0.914 28 H 0.073 0.927 29 H 0.092 0.908 30 H 0.048 0.952 31 H 0.169 0.831 32 H 0.105 0.895 33 H 0.062 0.938 34 H 0.226 0.774 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.236 0.764 39 H 0.112 0.888 40 H 0.116 0.884 41 H 0.136 0.864 42 H 0.112 0.888 43 H 0.113 0.887 44 H 0.113 0.887 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.898 0.347 26.710 26.780 hybrid contribution -0.726 -0.486 -1.061 1.374 sum -2.624 -0.139 25.649 25.784 Atomic orbital electron populations 1.21900 0.94764 1.02032 1.02264 1.21365 0.96423 1.01172 0.93102 0.89284 1.21883 1.00793 0.94411 0.89342 1.60084 1.21011 1.49068 1.00031 1.21675 1.01208 0.95378 0.90005 1.19812 0.85604 0.87921 0.84039 1.90515 1.44369 1.26236 1.85719 1.41874 1.49520 1.24215 1.04435 1.19761 1.32798 1.06754 0.83608 0.87855 1.25267 0.96909 0.96661 0.99125 1.69622 1.38880 1.21800 1.23971 0.85795 0.78286 0.79556 0.80672 1.19221 1.20740 1.20778 1.21376 1.00250 0.95220 0.83105 1.46041 1.58178 1.27994 1.05914 1.20588 0.79167 0.85726 0.84567 1.90701 1.39763 1.24531 1.86656 1.21229 1.02572 0.99710 0.91585 1.22058 1.01817 1.03165 0.88931 1.23038 0.96736 0.98196 1.03610 1.23004 1.03409 0.97029 0.98324 0.92764 0.91413 0.92670 0.90763 0.95190 0.83074 0.89547 0.93849 0.77442 0.91919 0.91250 0.91443 0.76434 0.88785 0.88394 0.86381 0.88838 0.88745 0.88659 0.88735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 8.84 37.16 0.33 -1.02 16 2 C -0.10 -0.96 2.63 -90.62 -0.24 -1.20 16 3 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 4 C 0.07 0.77 5.14 -3.82 -0.02 0.75 16 5 N -0.67 -10.49 6.12 -115.05 -0.70 -11.19 16 6 C 0.05 0.88 6.17 -4.98 -0.03 0.85 16 7 C 0.44 10.41 7.82 -10.98 -0.09 10.32 16 8 O -0.58 -15.82 15.78 5.55 0.09 -15.73 16 9 N -0.56 -14.32 5.29 -10.96 -0.06 -14.38 16 10 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 16 11 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 12 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 13 N -0.90 -24.55 13.05 55.50 0.72 -23.83 16 14 Si 0.93 21.03 29.55 -169.99 -5.02 16.00 16 15 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 16 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 17 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 18 C 0.12 1.16 5.06 -4.05 -0.02 1.13 16 19 N -0.73 -5.79 5.28 -60.30 -0.32 -6.10 16 20 C 0.51 4.90 7.83 -10.98 -0.09 4.82 16 21 O -0.54 -7.44 15.56 5.56 0.09 -7.35 16 22 C -0.11 -0.70 5.98 -27.88 -0.17 -0.86 16 23 C -0.14 -1.05 5.41 -90.62 -0.49 -1.54 16 24 C -0.18 -1.16 10.18 -26.73 -0.27 -1.43 16 25 C -0.18 -1.03 10.25 -26.73 -0.27 -1.31 16 26 H 0.05 0.39 7.18 -51.93 -0.37 0.01 16 27 H 0.07 0.70 6.68 -51.93 -0.35 0.35 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.35 5.60 6.68 -39.29 -0.26 5.34 16 32 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 33 H 0.04 0.69 8.14 -51.92 -0.42 0.27 16 34 H 0.39 9.53 7.90 -40.82 -0.32 9.20 16 35 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.40 2.21 7.65 -40.82 -0.31 1.90 16 39 H 0.09 0.43 7.88 -51.93 -0.41 0.02 16 40 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.12 1.12 7.31 -51.93 -0.38 0.74 16 42 H 0.09 0.53 8.03 -51.93 -0.42 0.11 16 43 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 LS Contribution 374.94 15.07 5.65 5.65 Total: -1.00 -33.36 374.94 -8.56 -41.92 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: -7.41 Total: 12.54 kcal Atomic # 6 Polarization: 4.08 SS G_CDS: -1.60 Total: 2.48 kcal Atomic # 7 Polarization: -55.15 SS G_CDS: -0.36 Total: -55.51 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: 0.17 Total: -23.08 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.36 -8.56 -41.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753604788.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.814 kcal (2) G-P(sol) polarization free energy of solvation -33.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds