Wall clock time and date at job start Fri Apr 10 2020 17:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46966 * 2 1 4 4 C 1.53002 * 109.46833 * 240.00110 * 2 1 3 5 5 N 1.46898 * 109.47132 * 65.00003 * 4 2 1 6 6 C 1.46895 * 111.00057 * 179.97438 * 5 4 2 7 7 C 1.50701 * 109.47427 * 180.02562 * 6 5 4 8 8 O 1.21288 * 119.99653 * 359.97438 * 7 6 5 9 9 N 1.34778 * 120.00069 * 180.02562 * 7 6 5 10 10 C 1.37096 * 120.00011 * 179.97438 * 9 7 6 11 11 H 1.07998 * 120.00006 * 359.97438 * 10 9 7 12 12 C 1.38952 * 120.00135 * 179.97438 * 10 9 7 13 13 N 1.31408 * 119.99851 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00031 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47016 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.46960 * 119.99861 * 14 12 10 17 17 H 1.48493 * 109.47347 * 240.00417 * 14 12 10 18 18 C 1.52997 * 109.46992 * 120.00238 * 2 1 3 19 19 N 1.46496 * 109.47194 * 294.99585 * 18 2 1 20 20 C 1.34777 * 120.00271 * 179.97438 * 19 18 2 21 21 O 1.21278 * 119.99854 * 0.02562 * 20 19 18 22 22 C 1.50703 * 120.00161 * 180.02562 * 20 19 18 23 23 C 1.53000 * 109.46912 * 180.02562 * 22 20 19 24 24 C 1.53003 * 117.49371 * 243.62054 * 23 22 20 25 25 C 1.53001 * 117.49608 * 175.00128 * 23 22 20 26 26 H 1.09002 * 109.47201 * 300.00138 * 1 2 3 27 27 H 1.09004 * 109.47134 * 59.99866 * 1 2 3 28 28 H 1.08993 * 109.47618 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46860 * 184.99980 * 4 2 1 30 30 H 1.09004 * 109.46934 * 305.00053 * 4 2 1 31 31 H 1.00898 * 111.00483 * 303.95469 * 5 4 2 32 32 H 1.09004 * 109.47187 * 300.00354 * 6 5 4 33 33 H 1.09008 * 109.47339 * 60.00115 * 6 5 4 34 34 H 0.97007 * 120.00119 * 359.97438 * 9 7 6 35 35 H 0.97004 * 119.99903 * 179.97438 * 13 12 10 36 36 H 1.09002 * 109.47045 * 174.99711 * 18 2 1 37 37 H 1.09001 * 109.47375 * 54.99636 * 18 2 1 38 38 H 0.97005 * 120.00266 * 0.02562 * 19 18 2 39 39 H 1.09002 * 109.47152 * 60.00245 * 22 20 19 40 40 H 1.09001 * 109.46980 * 300.00345 * 22 20 19 41 41 H 1.08995 * 115.55630 * 29.32739 * 23 22 20 42 42 H 1.08998 * 117.50656 * 0.02562 * 24 23 22 43 43 H 1.09001 * 117.49674 * 145.02590 * 24 23 22 44 44 H 1.09003 * 117.49710 * 214.97494 * 25 23 22 45 45 H 1.08998 * 117.50185 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.6513 0.0374 -2.4456 6 6 2.1256 -0.6264 -3.6672 7 6 1.7096 0.1793 -4.8708 8 8 1.0796 1.2055 -4.7253 9 7 2.0368 -0.2408 -6.1089 10 6 1.6580 0.4920 -7.2039 11 1 1.0969 1.4056 -7.0744 12 6 1.9957 0.0591 -8.4804 13 7 2.6788 -1.0524 -8.6379 14 14 1.4789 1.0572 -9.9724 15 1 0.7257 2.2575 -9.5282 16 1 2.6858 1.4816 -10.7262 17 1 0.6146 0.2263 -10.8486 18 6 2.0400 -0.7213 1.2492 19 7 1.6525 0.0353 2.4423 20 6 1.9956 -0.4137 3.6659 21 8 2.6255 -1.4438 3.7792 22 6 1.5965 0.3643 4.8933 23 6 2.1066 -0.3569 6.1425 24 6 1.0628 -0.8883 7.1271 25 6 1.9040 0.3369 7.4910 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1263 -0.7995 -1.2056 30 1 1.6053 -1.7198 -1.2952 31 1 0.6528 0.1794 -2.4753 32 1 3.2126 -0.7037 -3.6401 33 1 1.6919 -1.6245 -3.7301 34 1 2.5405 -1.0617 -6.2253 35 1 2.9143 -1.3548 -9.5290 36 1 3.1263 -0.7996 1.2055 37 1 1.6053 -1.7198 1.2951 38 1 1.1483 0.8591 2.3518 39 1 0.5101 0.4425 4.9366 40 1 2.0311 1.3629 4.8478 41 1 3.0166 -0.9417 6.0091 42 1 0.0128 -0.7244 6.8847 43 1 1.2862 -1.8229 7.6415 44 1 2.6807 0.2082 8.2449 45 1 1.4077 1.3073 7.4882 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753604788.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:45:01 Heat of formation + Delta-G solvation = -90.472763 kcal Electronic energy + Delta-G solvation = -22781.767556 eV Core-core repulsion = 19219.213623 eV Total energy + Delta-G solvation = -3562.553933 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.87859 -40.17805 -38.54319 -37.79881 -36.16499 -35.63290 -33.48365 -33.15167 -30.58044 -28.75964 -27.56190 -26.42918 -24.46049 -23.21385 -22.14255 -21.48563 -21.12860 -20.69044 -19.90772 -18.22948 -17.91207 -17.23518 -16.97764 -16.75845 -16.44460 -16.09340 -15.87320 -15.64377 -15.33660 -14.96001 -14.84970 -14.48794 -14.24883 -13.97509 -13.69488 -13.46202 -13.45053 -13.16631 -13.07221 -12.79942 -12.40920 -12.39262 -12.30908 -12.11741 -12.05708 -11.84718 -11.75172 -11.51514 -11.29760 -10.98373 -10.74846 -10.34908 -10.06721 -10.01948 -9.33263 -8.47041 -5.95965 1.36914 1.42295 1.56577 1.68149 2.04584 2.17370 2.30119 2.92003 2.97991 3.20318 3.53355 3.76425 3.78762 3.90973 3.95002 4.00153 4.07424 4.19831 4.32641 4.46709 4.52725 4.55892 4.57035 4.58741 4.66493 4.76710 4.79433 4.81886 4.82818 4.95991 5.01528 5.06543 5.26019 5.28292 5.34478 5.38131 5.41038 5.50854 5.88266 6.09604 6.41629 6.59010 6.59571 7.12172 7.29430 7.55733 8.10666 8.70558 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.062826 B = 0.001771 C = 0.001745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.568368 B =15806.575550 C =16040.352544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.088 4.088 3 H 0.087 0.913 4 C 0.065 3.935 5 N -0.681 5.681 6 C 0.063 3.937 7 C 0.438 3.562 8 O -0.623 6.623 9 N -0.573 5.573 10 C -0.335 4.335 11 H 0.080 0.920 12 C -0.013 4.013 13 N -0.920 5.920 14 Si 0.994 3.006 15 H -0.273 1.273 16 H -0.271 1.271 17 H -0.271 1.271 18 C 0.132 3.868 19 N -0.718 5.718 20 C 0.509 3.491 21 O -0.589 6.589 22 C -0.102 4.102 23 C -0.161 4.161 24 C -0.185 4.185 25 C -0.166 4.166 26 H 0.074 0.926 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.078 0.922 30 H 0.040 0.960 31 H 0.345 0.655 32 H 0.103 0.897 33 H 0.066 0.934 34 H 0.396 0.604 35 H 0.278 0.722 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.415 0.585 39 H 0.118 0.882 40 H 0.120 0.880 41 H 0.089 0.911 42 H 0.105 0.895 43 H 0.088 0.912 44 H 0.096 0.904 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.128 0.672 27.495 27.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.107 4.107 3 H 0.105 0.895 4 C -0.064 4.064 5 N -0.314 5.314 6 C -0.069 4.069 7 C 0.225 3.775 8 O -0.509 6.509 9 N -0.211 5.211 10 C -0.464 4.464 11 H 0.098 0.902 12 C -0.213 4.213 13 N -0.561 5.561 14 Si 0.818 3.182 15 H -0.197 1.197 16 H -0.197 1.197 17 H -0.196 1.196 18 C 0.007 3.993 19 N -0.370 5.370 20 C 0.297 3.703 21 O -0.470 6.470 22 C -0.141 4.141 23 C -0.179 4.179 24 C -0.221 4.221 25 C -0.203 4.203 26 H 0.093 0.907 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.096 0.904 30 H 0.058 0.942 31 H 0.165 0.835 32 H 0.121 0.879 33 H 0.084 0.916 34 H 0.230 0.770 35 H 0.087 0.913 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.253 0.747 39 H 0.136 0.864 40 H 0.138 0.862 41 H 0.107 0.893 42 H 0.123 0.877 43 H 0.106 0.894 44 H 0.115 0.885 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -2.499 0.950 27.515 27.645 hybrid contribution -0.525 -0.691 -1.247 1.520 sum -3.024 0.259 26.268 26.443 Atomic orbital electron populations 1.21878 0.94074 1.02191 1.02567 1.21204 0.96828 1.00625 0.92059 0.89502 1.21974 1.01190 0.94723 0.88521 1.60086 1.20848 1.50047 1.00440 1.21542 1.02231 0.95113 0.88041 1.20871 0.83951 0.87648 0.85020 1.90482 1.45799 1.28157 1.86475 1.41947 1.50040 1.24323 1.04754 1.19727 1.34387 1.07028 0.85298 0.90231 1.26054 0.96405 0.97578 1.01243 1.69681 1.38926 1.22534 1.25004 0.84853 0.78219 0.77974 0.77171 1.19726 1.19663 1.19581 1.21194 0.99560 0.95059 0.83502 1.45948 1.57691 1.28224 1.05177 1.21222 0.78196 0.85246 0.85658 1.90684 1.42082 1.26840 1.87350 1.21256 1.04043 0.99775 0.89065 1.22010 1.01308 1.04217 0.90405 1.23128 0.97219 0.98528 1.03273 1.23083 1.02945 0.97433 0.96815 0.90690 0.92865 0.92595 0.90368 0.94199 0.83464 0.87870 0.91648 0.76983 0.91304 0.92271 0.92158 0.74724 0.86394 0.86166 0.89265 0.87665 0.89365 0.88513 0.86924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 8.84 71.98 0.64 -1.76 16 2 C -0.09 -1.53 2.63 -10.79 -0.03 -1.56 16 3 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 4 C 0.07 1.43 5.14 86.30 0.44 1.87 16 5 N -0.68 -20.66 6.12 -517.92 -3.17 -23.83 16 6 C 0.06 2.15 6.17 85.56 0.53 2.68 16 7 C 0.44 20.80 7.82 87.66 0.69 21.49 16 8 O -0.62 -34.35 15.78 -3.05 -0.05 -34.40 16 9 N -0.57 -29.51 5.29 -306.99 -1.62 -31.13 16 10 C -0.33 -19.07 9.68 84.04 0.81 -18.26 16 11 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 12 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 13 N -0.92 -49.73 13.05 21.66 0.28 -49.45 16 14 Si 0.99 42.87 29.55 68.60 2.03 44.89 16 15 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 16 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 17 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 18 C 0.13 2.29 5.06 86.38 0.44 2.73 16 19 N -0.72 -10.17 5.28 -463.07 -2.45 -12.62 16 20 C 0.51 9.20 7.83 87.66 0.69 9.89 16 21 O -0.59 -16.48 15.56 -3.02 -0.05 -16.53 16 22 C -0.10 -1.07 5.98 29.85 0.18 -0.89 16 23 C -0.16 -2.27 5.41 -10.79 -0.06 -2.32 16 24 C -0.18 -2.17 10.18 30.60 0.31 -1.86 16 25 C -0.17 -1.59 10.25 30.60 0.31 -1.28 16 26 H 0.07 0.88 7.18 -2.39 -0.02 0.86 16 27 H 0.05 1.03 6.68 -2.38 -0.02 1.02 16 28 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.04 0.82 8.14 -2.38 -0.02 0.80 16 31 H 0.35 10.90 6.68 -89.70 -0.60 10.30 16 32 H 0.10 3.19 8.14 -2.38 -0.02 3.17 16 33 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 34 H 0.40 19.37 7.90 -92.70 -0.73 18.64 16 35 H 0.28 13.99 8.31 -92.71 -0.77 13.22 16 36 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.42 3.48 7.65 -92.70 -0.71 2.77 16 39 H 0.12 0.69 7.88 -2.39 -0.02 0.67 16 40 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.09 1.78 7.31 -2.39 -0.02 1.77 16 42 H 0.10 0.97 8.03 -2.39 -0.02 0.95 16 43 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -73.38 374.94 -0.65 -74.03 By element: Atomic # 1 Polarization: 39.58 SS G_CDS: -1.03 Total: 38.55 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: 5.41 Total: 10.49 kcal Atomic # 7 Polarization: -110.08 SS G_CDS: -6.96 Total: -117.04 kcal Atomic # 8 Polarization: -50.83 SS G_CDS: -0.10 Total: -50.93 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.89 kcal Total: -73.38 -0.65 -74.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753604788.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.444 kcal (2) G-P(sol) polarization free energy of solvation -73.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds