Wall clock time and date at job start Fri Apr 10 2020 17:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.47104 * 2 1 4 4 N 1.46898 * 109.47075 * 119.99543 * 2 1 3 5 5 C 1.46893 * 111.00376 * 306.04732 * 4 2 1 6 6 C 1.46909 * 110.99542 * 70.00338 * 4 2 1 7 7 C 1.52997 * 109.46813 * 169.99709 * 6 4 2 8 8 C 1.53120 * 109.52342 * 174.99589 * 7 6 4 9 9 C 1.53041 * 109.28182 * 177.61945 * 8 7 6 10 10 N 1.46849 * 109.52442 * 300.82868 * 9 8 7 11 11 C 1.46901 * 110.99649 * 185.83742 * 10 9 8 12 12 C 1.50701 * 109.46921 * 169.99608 * 11 10 9 13 13 O 1.21294 * 119.99849 * 0.02562 * 12 11 10 14 14 N 1.34780 * 119.99795 * 179.97438 * 12 11 10 15 15 C 1.37101 * 119.99707 * 180.02562 * 14 12 11 16 16 H 1.08002 * 119.99704 * 359.97438 * 15 14 12 17 17 C 1.38941 * 119.99927 * 180.02562 * 15 14 12 18 18 N 1.31417 * 120.00180 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00273 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.46986 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47457 * 119.99901 * 19 17 15 22 22 H 1.48501 * 109.47104 * 239.99973 * 19 17 15 23 23 C 1.46839 * 111.20047 * 61.73811 * 10 9 8 24 24 C 1.53034 * 109.52552 * 298.25821 * 23 10 9 25 25 H 1.09002 * 109.46712 * 300.00240 * 1 2 3 26 26 H 1.08998 * 109.46868 * 59.99957 * 1 2 3 27 27 H 1.08998 * 109.46768 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46967 * 240.00213 * 2 1 3 29 29 H 1.09003 * 109.46947 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.46684 * 300.00195 * 3 2 1 31 31 H 1.09001 * 109.46993 * 59.99719 * 3 2 1 32 32 H 1.09005 * 109.47231 * 183.95224 * 5 4 2 33 33 H 1.08996 * 109.47443 * 303.95469 * 5 4 2 34 34 H 1.09000 * 109.47111 * 63.95535 * 5 4 2 35 35 H 1.08995 * 109.47109 * 50.00197 * 6 4 2 36 36 H 1.08998 * 109.46851 * 289.99605 * 6 4 2 37 37 H 1.09005 * 109.52438 * 54.87091 * 7 6 4 38 38 H 1.09005 * 109.50142 * 57.68728 * 8 7 6 39 39 H 1.08998 * 109.50777 * 297.56625 * 8 7 6 40 40 H 1.08991 * 109.46218 * 180.80508 * 9 8 7 41 41 H 1.09005 * 109.44695 * 60.83538 * 9 8 7 42 42 H 1.09002 * 109.47401 * 49.99636 * 11 10 9 43 43 H 1.09001 * 109.46874 * 289.99649 * 11 10 9 44 44 H 0.96995 * 120.00011 * 0.02562 * 14 12 11 45 45 H 0.97000 * 119.99884 * 180.02562 * 18 17 15 46 46 H 1.09006 * 109.46266 * 58.27078 * 23 10 9 47 47 H 1.09002 * 109.46276 * 178.24270 * 23 10 9 48 48 H 1.09006 * 109.50444 * 299.24199 * 24 23 10 49 49 H 1.09003 * 109.50687 * 179.12283 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 1.4344 -0.1148 2.4166 6 6 1.7529 -2.1349 1.1203 7 6 2.4885 -2.8524 2.2538 8 6 2.1128 -4.3368 2.2487 9 6 2.8965 -5.0603 3.3463 10 7 4.3366 -4.9005 3.1077 11 6 5.1198 -5.6966 4.0621 12 6 6.5665 -5.7060 3.6402 13 8 6.9113 -5.1080 2.6428 14 7 7.4774 -6.3781 4.3717 15 6 8.7936 -6.3863 3.9882 16 1 9.1004 -5.8545 3.0996 17 6 9.7326 -7.0796 4.7419 18 7 9.3591 -7.7271 5.8228 19 14 11.5261 -7.0902 4.2198 20 1 11.6848 -6.2914 2.9781 21 1 12.3591 -6.5003 5.2983 22 1 11.9599 -8.4878 3.9676 23 6 4.7290 -3.4863 3.1552 24 6 4.0002 -2.7159 2.0519 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1301 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 1.8665 -0.5987 3.2926 33 1 1.6466 0.9538 2.4501 34 1 0.3556 -0.2709 2.4105 35 1 2.1026 -2.5169 0.1613 36 1 0.6814 -2.3118 1.2132 37 1 2.2071 -2.4088 3.2090 38 1 2.3588 -4.7711 1.2796 39 1 1.0440 -4.4424 2.4347 40 1 2.6419 -6.1200 3.3359 41 1 2.6396 -4.6345 4.3163 42 1 4.7401 -6.7181 4.0809 43 1 5.0341 -5.2588 5.0567 44 1 7.2017 -6.8560 5.1695 45 1 10.0147 -8.2108 6.3492 46 1 4.4636 -3.0681 4.1262 47 1 5.8056 -3.4029 3.0060 48 1 4.2758 -3.1246 1.0797 49 1 4.2798 -1.6633 2.0973 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000517521951.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:43:05 Heat of formation + Delta-G solvation = -57.663455 kcal Electronic energy + Delta-G solvation = -24852.584698 eV Core-core repulsion = 21427.286578 eV Total energy + Delta-G solvation = -3425.298120 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 297.216 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.78686 -39.87075 -38.67344 -36.00541 -35.07909 -33.26532 -32.19918 -31.63521 -29.49494 -28.23744 -27.69342 -26.52617 -25.02703 -24.01828 -22.39685 -21.01300 -20.51174 -20.43359 -19.85867 -17.75782 -17.13038 -16.77485 -16.49481 -16.35789 -15.90207 -15.85032 -15.54146 -15.27580 -15.05771 -14.90560 -14.40293 -14.07116 -14.02608 -13.79351 -13.58088 -13.42608 -13.08129 -12.96366 -12.84937 -12.80334 -12.72859 -12.39990 -12.29851 -12.24058 -12.11691 -12.04063 -12.03458 -11.62004 -11.53101 -11.39120 -11.14414 -11.07319 -10.21022 -9.98020 -9.13191 -9.09613 -8.45573 -5.93981 1.36692 1.41449 1.55976 2.07191 2.29393 2.83144 3.01391 3.21137 3.42528 3.81750 3.93917 3.96876 4.09401 4.19041 4.28694 4.32476 4.38053 4.41682 4.47420 4.52391 4.53612 4.58787 4.60726 4.69550 4.75263 4.78265 4.82019 4.83457 4.96255 4.99428 5.03709 5.07981 5.10763 5.12334 5.18181 5.31236 5.33613 5.39606 5.42164 5.43397 5.58232 5.94293 6.15378 6.23418 6.27663 6.34836 6.62692 7.14700 7.58282 8.14755 8.72250 Molecular weight = 297.22amu Principal moments of inertia in cm(-1) A = 0.028816 B = 0.002665 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.445034 B =10502.310921 C =11116.619524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.072 3.928 3 C -0.140 4.140 4 N -0.548 5.548 5 C 0.019 3.981 6 C 0.069 3.931 7 C -0.076 4.076 8 C -0.104 4.104 9 C 0.055 3.945 10 N -0.534 5.534 11 C 0.057 3.943 12 C 0.442 3.558 13 O -0.613 6.613 14 N -0.576 5.576 15 C -0.329 4.329 16 H 0.077 0.923 17 C -0.015 4.015 18 N -0.922 5.922 19 Si 0.993 3.007 20 H -0.274 1.274 21 H -0.270 1.270 22 H -0.270 1.270 23 C 0.056 3.944 24 C -0.083 4.083 25 H 0.060 0.940 26 H 0.068 0.932 27 H 0.052 0.948 28 H 0.074 0.926 29 H 0.050 0.950 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.035 0.965 35 H 0.066 0.934 36 H 0.045 0.955 37 H 0.071 0.929 38 H 0.061 0.939 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.039 0.961 42 H 0.110 0.890 43 H 0.062 0.938 44 H 0.395 0.605 45 H 0.277 0.723 46 H 0.025 0.975 47 H 0.054 0.946 48 H 0.045 0.955 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.029 12.544 -5.331 25.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.036 4.036 3 C -0.197 4.197 4 N -0.271 5.271 5 C -0.129 4.129 6 C -0.059 4.059 7 C -0.095 4.095 8 C -0.142 4.142 9 C -0.072 4.072 10 N -0.259 5.259 11 C -0.074 4.074 12 C 0.229 3.771 13 O -0.499 6.499 14 N -0.214 5.214 15 C -0.459 4.459 16 H 0.095 0.905 17 C -0.214 4.214 18 N -0.563 5.563 19 Si 0.816 3.184 20 H -0.199 1.199 21 H -0.196 1.196 22 H -0.196 1.196 23 C -0.072 4.072 24 C -0.121 4.121 25 H 0.079 0.921 26 H 0.087 0.913 27 H 0.071 0.929 28 H 0.092 0.908 29 H 0.069 0.931 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.054 0.946 35 H 0.084 0.916 36 H 0.063 0.937 37 H 0.089 0.911 38 H 0.080 0.920 39 H 0.108 0.892 40 H 0.102 0.898 41 H 0.057 0.943 42 H 0.128 0.872 43 H 0.080 0.920 44 H 0.229 0.771 45 H 0.086 0.914 46 H 0.043 0.957 47 H 0.073 0.927 48 H 0.064 0.936 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -20.088 12.731 -6.311 24.605 hybrid contribution 0.132 -0.321 1.086 1.140 sum -19.955 12.410 -5.225 24.074 Atomic orbital electron populations 1.22407 0.96665 1.01912 1.02819 1.21752 0.93380 0.95724 0.92778 1.21810 1.01171 0.94608 1.02150 1.62157 1.59160 1.03015 1.02800 1.22469 0.97408 1.00547 0.92452 1.22057 0.97829 0.87312 0.98658 1.21173 0.94349 0.95174 0.98772 1.21574 0.99646 0.94095 0.98869 1.22202 0.85749 1.01467 0.97777 1.61500 1.04620 1.09168 1.50644 1.21720 0.90510 1.00611 0.94555 1.20808 0.88516 0.82630 0.85131 1.90466 1.81919 1.48384 1.29086 1.41953 1.07192 1.46501 1.25778 1.19674 0.84292 1.31387 1.10556 0.90461 1.26035 1.04246 0.95626 0.95511 1.69683 1.36901 1.33410 1.16330 0.84875 0.76974 0.78314 0.78197 1.19878 1.19566 1.19554 1.22135 1.00405 0.87142 0.97484 1.21312 0.94761 0.98847 0.97163 0.92068 0.91329 0.92918 0.90775 0.93071 0.91263 0.92343 0.91851 0.90974 0.94636 0.91559 0.93655 0.91063 0.92003 0.89184 0.89772 0.94313 0.87238 0.91973 0.77079 0.91352 0.95682 0.92728 0.93612 0.91264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.24 8.44 71.98 0.61 -1.63 16 2 C 0.07 1.12 2.92 44.92 0.13 1.25 16 3 C -0.14 -1.98 9.12 71.98 0.66 -1.33 16 4 N -0.55 -10.05 4.23 -897.04 -3.80 -13.84 16 5 C 0.02 0.30 8.44 127.69 1.08 1.38 16 6 C 0.07 1.28 3.92 86.30 0.34 1.62 16 7 C -0.08 -1.63 2.17 -10.71 -0.02 -1.65 16 8 C -0.10 -2.15 5.38 30.65 0.16 -1.98 16 9 C 0.06 1.36 5.46 86.33 0.47 1.83 16 10 N -0.53 -18.26 4.40 -900.93 -3.96 -22.23 16 11 C 0.06 2.10 5.45 85.56 0.47 2.56 16 12 C 0.44 21.89 7.46 87.66 0.65 22.54 16 13 O -0.61 -35.06 13.90 -3.07 -0.04 -35.10 16 14 N -0.58 -30.54 5.29 -306.98 -1.62 -32.16 16 15 C -0.33 -19.18 9.68 84.04 0.81 -18.37 16 16 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 17 C -0.01 -0.81 5.50 84.92 0.47 -0.34 16 18 N -0.92 -50.68 13.05 21.66 0.28 -50.40 16 19 Si 0.99 43.88 29.55 68.60 2.03 45.91 16 20 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 21 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 22 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 23 C 0.06 1.96 5.10 86.33 0.44 2.40 16 24 C -0.08 -2.41 5.24 30.65 0.16 -2.25 16 25 H 0.06 0.74 6.42 -2.39 -0.02 0.73 16 26 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.05 0.69 6.91 -2.39 -0.02 0.67 16 28 H 0.07 1.25 7.93 -2.39 -0.02 1.23 16 29 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.06 0.78 6.47 -2.39 -0.02 0.76 16 32 H 0.06 1.08 6.37 -2.38 -0.02 1.06 16 33 H 0.07 1.06 6.30 -2.39 -0.02 1.04 16 34 H 0.04 0.49 6.46 -2.39 -0.02 0.48 16 35 H 0.07 1.34 7.93 -2.39 -0.02 1.32 16 36 H 0.05 0.73 7.06 -2.39 -0.02 0.71 16 37 H 0.07 1.48 6.33 -2.38 -0.02 1.46 16 38 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 39 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.08 1.87 8.01 -2.39 -0.02 1.85 16 41 H 0.04 0.88 8.14 -2.38 -0.02 0.86 16 42 H 0.11 3.51 7.99 -2.39 -0.02 3.49 16 43 H 0.06 2.07 8.12 -2.39 -0.02 2.05 16 44 H 0.40 19.87 7.90 -92.71 -0.73 19.14 16 45 H 0.28 14.19 8.31 -92.71 -0.77 13.42 16 46 H 0.03 0.82 8.14 -2.38 -0.02 0.80 16 47 H 0.05 2.42 5.78 -2.39 -0.01 2.41 16 48 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 49 H 0.07 2.01 7.84 -2.39 -0.02 2.00 16 Total: -1.00 -67.40 370.47 -0.50 -67.90 By element: Atomic # 1 Polarization: 33.71 SS G_CDS: 0.19 Total: 33.90 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: 6.43 Total: 6.03 kcal Atomic # 7 Polarization: -109.53 SS G_CDS: -9.10 Total: -118.63 kcal Atomic # 8 Polarization: -35.06 SS G_CDS: -0.04 Total: -35.10 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -67.40 -0.50 -67.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517521951.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.236 kcal (2) G-P(sol) polarization free energy of solvation -67.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds