Wall clock time and date at job start Fri Apr 10 2020 17:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46498 * 120.00072 * 2 1 4 4 C 1.34770 * 119.99913 * 180.02562 * 2 1 3 5 5 O 1.21287 * 119.99884 * 359.97438 * 4 2 1 6 6 C 1.50704 * 120.00237 * 179.97438 * 4 2 1 7 7 N 1.46498 * 109.47096 * 179.97438 * 6 4 2 8 8 C 1.34782 * 119.99675 * 180.02562 * 7 6 4 9 9 O 1.21582 * 120.00071 * 4.97931 * 8 7 6 10 10 N 1.34774 * 119.99915 * 184.98301 * 8 7 6 11 11 C 1.46926 * 120.63121 * 174.77166 * 10 8 7 12 12 C 1.53195 * 108.89465 * 126.33965 * 11 10 8 13 13 C 1.53354 * 109.14570 * 54.57617 * 12 11 10 14 14 C 1.52998 * 109.41339 * 178.67370 * 13 12 11 15 15 C 1.50701 * 109.47671 * 295.12915 * 14 13 12 16 16 H 1.08004 * 119.99565 * 359.97438 * 15 14 13 17 17 C 1.37873 * 120.00388 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99835 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99969 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47058 * 89.99862 * 19 17 15 21 21 H 1.48501 * 109.47118 * 209.99865 * 19 17 15 22 22 H 1.48503 * 109.47450 * 329.99994 * 19 17 15 23 23 C 1.53040 * 109.60905 * 298.70899 * 13 12 11 24 24 C 1.46926 * 120.63157 * 354.78914 * 10 8 7 25 25 H 1.09001 * 109.46534 * 270.00059 * 1 2 3 26 26 H 1.09001 * 109.46922 * 29.99538 * 1 2 3 27 27 H 1.08999 * 109.47599 * 149.99579 * 1 2 3 28 28 H 1.09003 * 109.47224 * 270.00477 * 3 2 1 29 29 H 1.08999 * 109.47109 * 30.00417 * 3 2 1 30 30 H 1.09001 * 109.46937 * 150.00680 * 3 2 1 31 31 H 1.09007 * 109.46781 * 60.00074 * 6 4 2 32 32 H 1.08998 * 109.47255 * 300.00439 * 6 4 2 33 33 H 0.96993 * 120.00686 * 359.97438 * 7 6 4 34 34 H 1.08999 * 109.58363 * 246.19988 * 11 10 8 35 35 H 1.09002 * 109.58625 * 6.48116 * 11 10 8 36 36 H 1.08997 * 109.49623 * 174.65400 * 12 11 10 37 37 H 1.09002 * 109.49577 * 294.75334 * 12 11 10 38 38 H 1.08994 * 109.42367 * 58.75582 * 13 12 11 39 39 H 1.09006 * 109.47442 * 55.13246 * 14 13 12 40 40 H 1.09001 * 109.47043 * 175.12891 * 14 13 12 41 41 H 0.97001 * 119.99599 * 179.97438 * 18 17 15 42 42 H 1.08993 * 109.50186 * 301.42491 * 23 13 12 43 43 H 1.09004 * 109.52060 * 181.34332 * 23 13 12 44 44 H 1.09010 * 109.58451 * 353.37613 * 24 10 8 45 45 H 1.08999 * 109.58904 * 113.65827 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1672 -0.0005 5 8 1.5324 -2.2175 -0.0005 6 6 3.6459 -1.1672 -0.0011 7 7 4.1341 -2.5485 -0.0010 8 6 5.4593 -2.7948 -0.0009 9 8 6.2486 -1.8745 0.0904 10 7 5.9093 -4.0611 -0.1022 11 6 7.3477 -4.3374 -0.2185 12 6 7.7505 -5.3368 0.8703 13 6 6.8583 -6.5798 0.7672 14 6 7.2773 -7.5963 1.8311 15 6 8.6750 -8.0796 1.5415 16 1 9.2108 -7.6999 0.6840 17 6 9.2695 -9.0071 2.3705 18 7 8.6169 -9.4697 3.4144 19 14 11.0017 -9.6065 2.0110 20 1 11.9821 -8.7297 2.7006 21 1 11.1546 -11.0004 2.4999 22 1 11.2457 -9.5660 0.5467 23 6 5.3969 -6.1829 0.9887 24 6 4.9709 -5.1916 -0.0987 25 1 -0.3632 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3634 -0.8899 -0.5139 28 1 2.3791 1.5834 -1.0277 29 1 1.6085 2.0283 0.5139 30 1 3.1500 1.1383 0.5137 31 1 4.0096 -0.6536 0.8889 32 1 4.0089 -0.6532 -0.8911 33 1 3.5039 -3.2857 -0.0002 34 1 7.5601 -4.7610 -1.2001 35 1 7.9090 -3.4118 -0.0907 36 1 8.7939 -5.6215 0.7348 37 1 7.6225 -4.8779 1.8507 38 1 6.9681 -7.0237 -0.2222 39 1 7.2521 -7.1252 2.8138 40 1 6.5900 -8.4422 1.8161 41 1 9.0350 -10.1225 3.9974 42 1 5.2911 -5.7163 1.9680 43 1 4.7667 -7.0709 0.9387 44 1 3.9640 -4.8301 0.1106 45 1 4.9876 -5.6834 -1.0713 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000583808945.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:43:51 Heat of formation + Delta-G solvation = -65.133758 kcal Electronic energy + Delta-G solvation = -24285.404133 eV Core-core repulsion = 20723.948982 eV Total energy + Delta-G solvation = -3561.455151 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.67152 -39.81632 -37.43151 -36.07273 -34.58595 -33.93040 -32.06446 -30.74375 -29.52968 -28.16337 -27.43893 -25.62701 -24.44563 -22.68220 -21.87482 -20.08845 -20.06811 -19.19755 -18.05575 -17.10668 -16.61463 -16.51308 -16.20325 -15.83151 -15.38994 -14.56025 -14.43461 -14.13884 -14.04624 -13.72459 -13.34830 -13.26199 -13.11805 -13.09538 -12.93774 -12.80358 -12.47586 -12.45336 -12.07282 -11.83430 -11.16388 -10.98352 -10.72580 -10.64795 -10.40568 -10.33201 -10.17357 -9.95208 -9.58586 -9.29404 -9.22101 -9.17580 -8.93558 -8.32628 -8.21923 -5.97149 -3.98774 2.12789 2.29827 2.88209 3.27976 3.33732 3.40237 3.42998 3.95882 4.00909 4.48082 4.57083 4.79791 4.84669 5.00639 5.03496 5.11601 5.16638 5.22175 5.37228 5.37817 5.40072 5.44364 5.65497 5.71545 5.86228 5.89502 6.03571 6.13929 6.28202 6.38308 6.43050 6.54580 6.68672 6.78614 7.00683 7.05951 7.12167 7.17433 7.62404 7.69734 7.84582 8.01770 8.02839 8.45593 8.65828 9.07734 9.64923 11.14190 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.036906 B = 0.002617 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.494442 B =10696.377840 C =11133.454456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.620 5.620 3 C 0.072 3.928 4 C 0.509 3.491 5 O -0.534 6.534 6 C 0.123 3.877 7 N -0.742 5.742 8 C 0.711 3.289 9 O -0.598 6.598 10 N -0.619 5.619 11 C 0.126 3.874 12 C -0.118 4.118 13 C -0.080 4.080 14 C 0.027 3.973 15 C -0.515 4.515 16 H 0.056 0.944 17 C 0.055 3.945 18 N -0.896 5.896 19 Si 0.889 3.111 20 H -0.281 1.281 21 H -0.288 1.288 22 H -0.274 1.274 23 C -0.129 4.129 24 C 0.111 3.889 25 H 0.057 0.943 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.062 0.938 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.407 0.593 34 H 0.062 0.938 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.015 0.985 40 H 0.015 0.985 41 H 0.259 0.741 42 H 0.061 0.939 43 H 0.071 0.929 44 H 0.069 0.931 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.256 20.521 -8.437 26.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.355 5.355 3 C -0.071 4.071 4 C 0.296 3.704 5 O -0.410 6.410 6 C -0.005 4.005 7 N -0.404 5.404 8 C 0.412 3.588 9 O -0.478 6.478 10 N -0.355 5.355 11 C 0.004 3.996 12 C -0.156 4.156 13 C -0.099 4.099 14 C -0.010 4.010 15 C -0.553 4.553 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.536 5.536 19 Si 0.717 3.283 20 H -0.207 1.207 21 H -0.214 1.214 22 H -0.199 1.199 23 C -0.168 4.168 24 C -0.012 4.012 25 H 0.075 0.925 26 H 0.090 0.910 27 H 0.097 0.903 28 H 0.081 0.919 29 H 0.095 0.905 30 H 0.097 0.903 31 H 0.115 0.885 32 H 0.113 0.887 33 H 0.247 0.753 34 H 0.080 0.920 35 H 0.105 0.895 36 H 0.103 0.897 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.033 0.967 40 H 0.034 0.966 41 H 0.069 0.931 42 H 0.080 0.920 43 H 0.090 0.910 44 H 0.087 0.913 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -15.000 20.509 -8.248 26.714 hybrid contribution 0.548 -0.659 -0.004 0.857 sum -14.453 19.850 -8.252 25.903 Atomic orbital electron populations 1.21681 0.78605 1.03348 1.02146 1.47659 1.07415 1.06321 1.74063 1.21941 0.97628 0.85001 1.02526 1.20676 0.90182 0.83577 0.75933 1.90710 1.69967 1.30886 1.49461 1.20844 0.89824 0.85305 1.04510 1.44964 1.06368 1.07770 1.81334 1.15687 0.81802 0.83488 0.77775 1.90879 1.54936 1.43335 1.58613 1.47321 1.08365 1.03646 1.76214 1.21684 0.78397 1.00270 0.99271 1.21966 1.01225 0.94864 0.97591 1.21236 0.91387 0.96024 1.01223 1.19125 0.96048 0.92740 0.93039 1.21246 0.99986 1.23397 1.10676 0.92559 1.25025 0.97726 0.96555 0.95235 1.69967 1.37335 1.30945 1.15328 0.86639 0.85105 0.78006 0.78512 1.20724 1.21351 1.19904 1.22023 0.98968 0.97961 0.97824 1.21733 0.91539 0.87695 1.00234 0.92463 0.90997 0.90324 0.91938 0.90510 0.90300 0.88493 0.88652 0.75271 0.92015 0.89540 0.89738 0.92348 0.92320 0.96658 0.96639 0.93093 0.92003 0.91044 0.91262 0.91396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.49 10.44 59.85 0.62 1.12 16 2 N -0.62 -4.45 3.27 -189.51 -0.62 -5.07 16 3 C 0.07 0.28 10.24 59.85 0.61 0.89 16 4 C 0.51 5.19 7.74 -10.99 -0.09 5.10 16 5 O -0.53 -7.20 15.25 5.55 0.08 -7.12 16 6 C 0.12 1.26 4.71 -5.19 -0.02 1.23 16 7 N -0.74 -9.66 5.44 -66.41 -0.36 -10.03 16 8 C 0.71 11.33 8.29 -86.91 -0.72 10.61 16 9 O -0.60 -11.12 15.77 5.29 0.08 -11.03 16 10 N -0.62 -9.64 2.97 -178.49 -0.53 -10.17 16 11 C 0.13 2.04 6.43 -3.71 -0.02 2.02 16 12 C -0.12 -2.20 5.21 -26.45 -0.14 -2.34 16 13 C -0.08 -1.58 2.10 -90.42 -0.19 -1.77 16 14 C 0.03 0.69 4.45 -27.88 -0.12 0.57 16 15 C -0.51 -14.17 8.39 -34.44 -0.29 -14.46 16 16 H 0.06 1.50 7.06 -52.48 -0.37 1.13 16 17 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 18 N -0.90 -26.91 13.29 55.43 0.74 -26.18 16 19 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 23 C -0.13 -2.14 5.36 -26.61 -0.14 -2.28 16 24 C 0.11 1.55 6.39 -3.71 -0.02 1.52 16 25 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 26 H 0.07 0.24 8.07 -51.93 -0.42 -0.18 16 27 H 0.08 0.58 7.42 -51.93 -0.39 0.19 16 28 H 0.06 0.19 8.14 -51.93 -0.42 -0.24 16 29 H 0.08 0.17 8.07 -51.93 -0.42 -0.25 16 30 H 0.08 0.29 6.44 -51.93 -0.33 -0.05 16 31 H 0.10 0.92 7.40 -51.92 -0.38 0.54 16 32 H 0.10 0.86 8.11 -51.93 -0.42 0.44 16 33 H 0.41 5.19 4.93 -40.82 -0.20 4.99 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.09 1.44 6.99 -51.93 -0.36 1.08 16 36 H 0.08 1.66 6.93 -51.93 -0.36 1.30 16 37 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 43 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 44 H 0.07 0.85 5.65 -51.92 -0.29 0.55 16 45 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 358.86 15.07 5.41 5.41 Total: -1.00 -34.58 358.86 -8.16 -42.73 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -7.31 Total: 1.17 kcal Atomic # 6 Polarization: 4.31 SS G_CDS: -0.62 Total: 3.69 kcal Atomic # 7 Polarization: -50.66 SS G_CDS: -0.78 Total: -51.44 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: 0.17 Total: -18.15 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.58 -8.16 -42.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583808945.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.402 kcal (2) G-P(sol) polarization free energy of solvation -34.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds