Wall clock time and date at job start Fri Apr 10 2020 17:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47615 * 2 1 4 4 H 1.08995 * 109.47636 * 177.85161 * 3 2 1 5 5 C 1.50702 * 109.46956 * 57.84754 * 3 2 1 6 6 H 1.08004 * 120.00211 * 244.77736 * 5 3 2 7 7 C 1.37874 * 120.00014 * 64.77964 * 5 3 2 8 8 N 1.31519 * 119.99868 * 10.57367 * 7 5 3 9 9 Si 1.86803 * 120.00330 * 190.57644 * 7 5 3 10 10 H 1.48504 * 109.46997 * 270.00123 * 9 7 5 11 11 H 1.48500 * 109.47024 * 29.99597 * 9 7 5 12 12 H 1.48495 * 109.47403 * 150.00006 * 9 7 5 13 13 N 1.46900 * 109.46988 * 297.85255 * 3 2 1 14 14 C 1.46898 * 110.99963 * 276.89327 * 13 3 2 15 15 H 1.09007 * 109.47048 * 36.90602 * 14 13 3 16 16 C 1.53000 * 109.47466 * 276.90991 * 14 13 3 17 17 C 1.50701 * 109.47333 * 156.90490 * 14 13 3 18 18 O 1.21281 * 119.99647 * 18.11445 * 17 14 13 19 19 N 1.34772 * 120.00169 * 198.11167 * 17 14 13 20 20 C 1.47081 * 120.88003 * 4.41634 * 19 17 14 21 21 C 1.53701 * 108.27840 * 128.75356 * 20 19 17 22 22 N 1.46901 * 109.25408 * 54.07803 * 21 20 19 23 23 C 1.46905 * 110.99617 * 172.60564 * 22 21 20 24 24 C 1.52994 * 109.47666 * 314.30618 * 23 22 21 25 25 C 1.46889 * 111.27244 * 296.75694 * 22 21 20 26 26 C 1.47079 * 120.88332 * 184.68825 * 19 17 14 27 27 H 1.09007 * 109.46726 * 64.32152 * 1 2 3 28 28 H 1.09001 * 109.47549 * 184.32095 * 1 2 3 29 29 H 1.09002 * 109.47272 * 304.32342 * 1 2 3 30 30 H 1.09001 * 109.46995 * 239.99630 * 2 1 3 31 31 H 1.08999 * 109.46969 * 120.00058 * 2 1 3 32 32 H 0.96998 * 120.00169 * 356.76192 * 8 7 5 33 33 H 1.00896 * 111.00128 * 152.94187 * 13 3 2 34 34 H 1.08996 * 109.47240 * 65.16746 * 16 14 13 35 35 H 1.08997 * 109.47490 * 185.17583 * 16 14 13 36 36 H 1.09004 * 109.46716 * 305.17412 * 16 14 13 37 37 H 1.09007 * 109.62570 * 248.51685 * 20 19 17 38 38 H 1.08994 * 109.63201 * 9.09873 * 20 19 17 39 39 H 1.08996 * 109.64469 * 294.08159 * 21 20 19 40 40 H 1.08990 * 109.42202 * 173.94517 * 21 20 19 41 41 H 1.09006 * 109.46568 * 74.30473 * 23 22 21 42 42 H 1.08999 * 109.46875 * 194.30265 * 23 22 21 43 43 H 1.09002 * 109.47012 * 59.99161 * 24 23 22 44 44 H 1.08996 * 109.47653 * 179.97438 * 24 23 22 45 45 H 1.09004 * 109.46734 * 300.00041 * 24 23 22 46 46 H 1.09002 * 109.49858 * 303.14946 * 25 22 21 47 47 H 1.08998 * 109.49547 * 183.06496 * 25 22 21 48 48 H 1.09001 * 109.62775 * 350.90373 * 26 19 17 49 49 H 1.09003 * 109.62546 * 111.47859 * 26 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1294 1.4427 0.0385 5 6 1.4947 2.1681 1.2029 6 1 0.8158 2.9977 1.0712 7 6 1.8624 1.7730 2.4716 8 7 2.8402 0.9085 2.6336 9 14 0.9718 2.4654 3.9605 10 1 1.6565 3.7019 4.4161 11 1 -0.4318 2.7832 3.5942 12 1 0.9826 1.4617 5.0549 13 7 1.5933 2.1198 -1.2245 14 6 2.4922 1.8234 -2.3480 15 1 2.8310 0.7896 -2.2793 16 6 3.7005 2.7605 -2.2954 17 6 1.7559 2.0254 -3.6473 18 8 0.7351 2.6798 -3.6703 19 7 2.2319 1.4789 -4.7836 20 6 3.4132 0.6030 -4.7628 21 6 3.0641 -0.6950 -5.5082 22 7 2.5605 -0.3638 -6.8479 23 6 2.3801 -1.5766 -7.6571 24 6 3.6095 -2.4752 -7.5105 25 6 1.3137 0.4091 -6.7725 26 6 1.5874 1.7474 -6.0781 27 1 -0.3633 0.4453 -0.9263 28 1 -0.3634 -1.0247 0.0774 29 1 -0.3634 0.5795 0.8487 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.2713 0.5132 1.8598 33 1 1.5130 3.1149 -1.0786 34 1 4.2843 2.5506 -1.3992 35 1 4.3205 2.6038 -3.1780 36 1 3.3572 3.7948 -2.2714 37 1 4.2468 1.1006 -5.2586 38 1 3.6811 0.3737 -3.7315 39 1 2.2983 -1.2399 -4.9563 40 1 3.9574 -1.3129 -5.5980 41 1 1.4950 -2.1131 -7.3151 42 1 2.2552 -1.2996 -8.7039 43 1 3.7344 -2.7521 -6.4636 44 1 3.4755 -3.3752 -8.1105 45 1 4.4946 -1.9386 -7.8524 46 1 0.5722 -0.1512 -6.2029 47 1 0.9376 0.5919 -7.7791 48 1 0.6475 2.2752 -5.9167 49 1 2.2488 2.3529 -6.6978 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584122263.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:43:53 Heat of formation + Delta-G solvation = -27.123746 kcal Electronic energy + Delta-G solvation = -25840.226916 eV Core-core repulsion = 22416.253097 eV Total energy + Delta-G solvation = -3423.973819 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 297.216 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.24331 -38.38221 -36.55352 -35.00214 -33.58411 -31.76590 -31.00626 -30.58258 -28.73373 -26.92797 -25.47088 -24.16053 -23.74564 -23.40542 -21.94477 -20.77267 -19.36956 -18.64775 -17.59852 -16.59627 -15.93110 -15.60020 -15.41769 -15.24798 -14.95126 -14.40365 -14.34099 -13.81102 -13.72637 -13.56670 -13.07429 -13.00640 -12.84412 -12.46755 -12.26983 -12.11828 -12.09654 -11.99555 -11.63458 -11.50297 -11.46364 -11.26113 -11.09294 -11.05318 -10.90579 -10.76139 -10.18012 -10.10165 -10.00279 -9.74649 -9.27517 -8.82630 -8.61103 -8.40870 -8.23371 -7.36149 -6.37285 -4.05931 2.97037 3.01431 3.43366 3.48779 3.61229 3.64044 4.49790 4.56125 4.62121 4.73884 4.82790 4.95626 5.06069 5.10074 5.14635 5.15888 5.20441 5.32405 5.33837 5.36719 5.45241 5.51022 5.56534 5.64854 5.69113 5.73014 5.82550 5.89510 5.90398 6.05415 6.25286 6.36460 6.40239 6.52891 6.61333 6.72578 6.76006 6.93433 7.03109 7.24196 7.42627 7.52741 7.57415 7.86209 8.10593 8.47686 8.54684 8.58894 8.86896 9.63389 11.00367 Molecular weight = 297.22amu Principal moments of inertia in cm(-1) A = 0.024656 B = 0.003547 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.356106 B = 7892.624306 C = 8205.108535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.105 4.105 3 C 0.206 3.794 4 H -0.005 1.005 5 C -0.593 4.593 6 H 0.055 0.945 7 C 0.025 3.975 8 N -0.910 5.910 9 Si 1.067 2.933 10 H -0.289 1.289 11 H -0.287 1.287 12 H -0.285 1.285 13 N -0.658 5.658 14 C 0.069 3.931 15 H 0.091 0.909 16 C -0.173 4.173 17 C 0.526 3.474 18 O -0.524 6.524 19 N -0.623 5.623 20 C 0.113 3.887 21 C 0.032 3.968 22 N -0.538 5.538 23 C 0.050 3.950 24 C -0.158 4.158 25 C 0.042 3.958 26 C 0.118 3.882 27 H 0.047 0.953 28 H 0.016 0.984 29 H 0.063 0.937 30 H 0.016 0.984 31 H 0.058 0.942 32 H 0.269 0.731 33 H 0.344 0.656 34 H 0.070 0.930 35 H 0.055 0.945 36 H 0.060 0.940 37 H 0.074 0.926 38 H 0.091 0.909 39 H 0.040 0.960 40 H 0.093 0.907 41 H 0.033 0.967 42 H 0.076 0.924 43 H 0.059 0.941 44 H 0.060 0.940 45 H 0.064 0.936 46 H 0.039 0.961 47 H 0.084 0.916 48 H 0.094 0.906 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.148 -4.442 -19.717 20.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.144 4.144 3 C 0.098 3.902 4 H 0.012 0.988 5 C -0.631 4.631 6 H 0.073 0.927 7 C -0.180 4.180 8 N -0.546 5.546 9 Si 0.895 3.105 10 H -0.216 1.216 11 H -0.213 1.213 12 H -0.210 1.210 13 N -0.289 5.289 14 C -0.046 4.046 15 H 0.109 0.891 16 C -0.232 4.232 17 C 0.314 3.686 18 O -0.398 6.398 19 N -0.360 5.360 20 C -0.011 4.011 21 C -0.097 4.097 22 N -0.264 5.264 23 C -0.077 4.077 24 C -0.215 4.215 25 C -0.087 4.087 26 C -0.005 4.005 27 H 0.066 0.934 28 H 0.035 0.965 29 H 0.082 0.918 30 H 0.034 0.966 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.163 0.837 34 H 0.089 0.911 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.092 0.908 38 H 0.109 0.891 39 H 0.059 0.941 40 H 0.112 0.888 41 H 0.051 0.949 42 H 0.094 0.906 43 H 0.078 0.922 44 H 0.079 0.921 45 H 0.084 0.916 46 H 0.057 0.943 47 H 0.102 0.898 48 H 0.113 0.887 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.429 -4.294 -18.421 19.070 hybrid contribution 0.278 -0.158 -1.182 1.225 sum 2.707 -4.452 -19.604 20.284 Atomic orbital electron populations 1.21447 0.96370 0.97756 1.02259 1.21513 0.96525 0.98290 0.98056 1.19276 0.92876 0.91414 0.86608 0.98773 1.21921 1.31471 1.18223 0.91498 0.92670 1.25686 0.95485 0.96212 1.00613 1.70789 1.20269 1.29098 1.34431 0.83576 0.75669 0.75870 0.75336 1.21636 1.21304 1.21048 1.60333 1.48108 1.15839 1.04656 1.21465 0.91777 1.00405 0.90912 0.89123 1.22413 0.98189 1.00217 1.02408 1.21007 0.84703 0.78187 0.84660 1.90637 1.23783 1.39728 1.85672 1.48223 1.30824 1.49915 1.06992 1.21954 0.88038 0.89857 1.01254 1.22735 1.00861 0.97136 0.88927 1.62046 1.29523 1.20902 1.13884 1.22088 0.97438 0.89969 0.98221 1.21954 0.98299 0.99083 1.02167 1.22484 0.90471 0.94943 1.00757 1.21578 0.99403 0.95890 0.83617 0.93415 0.96489 0.91848 0.96576 0.92336 0.91925 0.83715 0.91082 0.92643 0.92083 0.90753 0.89076 0.94149 0.88843 0.94914 0.90603 0.92166 0.92135 0.91646 0.94251 0.89775 0.88745 0.91209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.75 9.53 37.16 0.35 -2.39 16 2 C -0.11 -2.45 5.47 -26.73 -0.15 -2.60 16 3 C 0.21 4.97 1.75 -68.87 -0.12 4.85 16 4 H -0.01 -0.13 6.38 -51.93 -0.33 -0.46 16 5 C -0.59 -16.00 7.05 -34.44 -0.24 -16.24 16 6 H 0.06 1.53 7.72 -52.48 -0.41 1.12 16 7 C 0.02 0.68 5.20 -17.82 -0.09 0.59 16 8 N -0.91 -26.33 13.08 55.43 0.73 -25.61 16 9 Si 1.07 24.98 29.92 -169.99 -5.09 19.89 16 10 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 N -0.66 -14.26 5.00 -102.17 -0.51 -14.77 16 14 C 0.07 1.21 1.98 -68.87 -0.14 1.08 16 15 H 0.09 1.56 5.26 -51.92 -0.27 1.29 16 16 C -0.17 -2.68 8.99 37.16 0.33 -2.35 16 17 C 0.53 9.21 6.96 -10.99 -0.08 9.13 16 18 O -0.52 -11.07 15.99 5.56 0.09 -10.98 16 19 N -0.62 -8.54 3.00 -172.18 -0.52 -9.06 16 20 C 0.11 1.23 5.73 -3.36 -0.02 1.21 16 21 C 0.03 0.32 5.06 -3.46 -0.02 0.30 16 22 N -0.54 -5.21 4.78 -234.03 -1.12 -6.33 16 23 C 0.05 0.40 5.99 -3.82 -0.02 0.38 16 24 C -0.16 -1.07 9.16 37.15 0.34 -0.73 16 25 C 0.04 0.43 5.58 -3.71 -0.02 0.41 16 26 C 0.12 1.42 6.61 -3.60 -0.02 1.39 16 27 H 0.05 1.09 7.80 -51.92 -0.40 0.68 16 28 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 1.55 7.00 -51.93 -0.36 1.19 16 30 H 0.02 0.34 7.24 -51.93 -0.38 -0.04 16 31 H 0.06 1.48 6.44 -51.93 -0.33 1.14 16 32 H 0.27 7.73 6.01 -40.82 -0.25 7.49 16 33 H 0.34 7.75 8.01 -39.29 -0.31 7.44 16 34 H 0.07 1.18 7.35 -51.93 -0.38 0.79 16 35 H 0.05 0.71 7.36 -51.93 -0.38 0.32 16 36 H 0.06 0.98 8.05 -51.93 -0.42 0.56 16 37 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16 38 H 0.09 1.01 5.49 -51.93 -0.28 0.72 16 39 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.09 0.77 5.73 -51.93 -0.30 0.47 16 41 H 0.03 0.28 8.08 -51.93 -0.42 -0.14 16 42 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.42 6.18 -51.93 -0.32 0.10 16 44 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 45 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.08 0.71 8.11 -51.93 -0.42 0.29 16 48 H 0.09 1.27 7.04 -51.93 -0.37 0.90 16 49 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 368.52 15.07 5.55 5.55 Total: -1.00 -30.98 368.52 -9.27 -40.26 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -8.52 Total: 6.01 kcal Atomic # 6 Polarization: -5.06 SS G_CDS: 0.11 Total: -4.95 kcal Atomic # 7 Polarization: -54.35 SS G_CDS: -1.42 Total: -55.77 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.09 Total: -10.98 kcal Atomic # 14 Polarization: 24.98 SS G_CDS: -5.09 Total: 19.89 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.98 -9.27 -40.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584122263.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.132 kcal (2) G-P(sol) polarization free energy of solvation -30.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds