Wall clock time and date at job start Fri Apr 10 2020 17:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47615 * 2 1 4 4 H 1.08995 * 109.47636 * 177.85161 * 3 2 1 5 5 C 1.50702 * 109.46956 * 57.84754 * 3 2 1 6 6 H 1.08004 * 120.00211 * 244.77736 * 5 3 2 7 7 C 1.37874 * 120.00014 * 64.77964 * 5 3 2 8 8 N 1.31519 * 119.99868 * 10.57367 * 7 5 3 9 9 Si 1.86803 * 120.00330 * 190.57644 * 7 5 3 10 10 H 1.48504 * 109.46997 * 270.00123 * 9 7 5 11 11 H 1.48500 * 109.47024 * 29.99597 * 9 7 5 12 12 H 1.48495 * 109.47403 * 150.00006 * 9 7 5 13 13 N 1.46900 * 109.46988 * 297.85255 * 3 2 1 14 14 C 1.46898 * 110.99963 * 276.89327 * 13 3 2 15 15 H 1.09007 * 109.47048 * 36.90602 * 14 13 3 16 16 C 1.53000 * 109.47466 * 276.90991 * 14 13 3 17 17 C 1.50701 * 109.47333 * 156.90490 * 14 13 3 18 18 O 1.21281 * 119.99647 * 18.11445 * 17 14 13 19 19 N 1.34772 * 120.00169 * 198.11167 * 17 14 13 20 20 C 1.47081 * 120.88003 * 4.41634 * 19 17 14 21 21 C 1.53701 * 108.27840 * 128.75356 * 20 19 17 22 22 N 1.46901 * 109.25408 * 54.07803 * 21 20 19 23 23 C 1.46905 * 110.99617 * 172.60564 * 22 21 20 24 24 C 1.52994 * 109.47666 * 314.30618 * 23 22 21 25 25 C 1.46889 * 111.27244 * 296.75694 * 22 21 20 26 26 C 1.47079 * 120.88332 * 184.68825 * 19 17 14 27 27 H 1.09007 * 109.46726 * 64.32152 * 1 2 3 28 28 H 1.09001 * 109.47549 * 184.32095 * 1 2 3 29 29 H 1.09002 * 109.47272 * 304.32342 * 1 2 3 30 30 H 1.09001 * 109.46995 * 239.99630 * 2 1 3 31 31 H 1.08999 * 109.46969 * 120.00058 * 2 1 3 32 32 H 0.96998 * 120.00169 * 356.76192 * 8 7 5 33 33 H 1.00896 * 111.00128 * 152.94187 * 13 3 2 34 34 H 1.08996 * 109.47240 * 65.16746 * 16 14 13 35 35 H 1.08997 * 109.47490 * 185.17583 * 16 14 13 36 36 H 1.09004 * 109.46716 * 305.17412 * 16 14 13 37 37 H 1.09007 * 109.62570 * 248.51685 * 20 19 17 38 38 H 1.08994 * 109.63201 * 9.09873 * 20 19 17 39 39 H 1.08996 * 109.64469 * 294.08159 * 21 20 19 40 40 H 1.08990 * 109.42202 * 173.94517 * 21 20 19 41 41 H 1.09006 * 109.46568 * 74.30473 * 23 22 21 42 42 H 1.08999 * 109.46875 * 194.30265 * 23 22 21 43 43 H 1.09002 * 109.47012 * 59.99161 * 24 23 22 44 44 H 1.08996 * 109.47653 * 179.97438 * 24 23 22 45 45 H 1.09004 * 109.46734 * 300.00041 * 24 23 22 46 46 H 1.09002 * 109.49858 * 303.14946 * 25 22 21 47 47 H 1.08998 * 109.49547 * 183.06496 * 25 22 21 48 48 H 1.09001 * 109.62775 * 350.90373 * 26 19 17 49 49 H 1.09003 * 109.62546 * 111.47859 * 26 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1294 1.4427 0.0385 5 6 1.4947 2.1681 1.2029 6 1 0.8158 2.9977 1.0712 7 6 1.8624 1.7730 2.4716 8 7 2.8402 0.9085 2.6336 9 14 0.9718 2.4654 3.9605 10 1 1.6565 3.7019 4.4161 11 1 -0.4318 2.7832 3.5942 12 1 0.9826 1.4617 5.0549 13 7 1.5933 2.1198 -1.2245 14 6 2.4922 1.8234 -2.3480 15 1 2.8310 0.7896 -2.2793 16 6 3.7005 2.7605 -2.2954 17 6 1.7559 2.0254 -3.6473 18 8 0.7351 2.6798 -3.6703 19 7 2.2319 1.4789 -4.7836 20 6 3.4132 0.6030 -4.7628 21 6 3.0641 -0.6950 -5.5082 22 7 2.5605 -0.3638 -6.8479 23 6 2.3801 -1.5766 -7.6571 24 6 3.6095 -2.4752 -7.5105 25 6 1.3137 0.4091 -6.7725 26 6 1.5874 1.7474 -6.0781 27 1 -0.3633 0.4453 -0.9263 28 1 -0.3634 -1.0247 0.0774 29 1 -0.3634 0.5795 0.8487 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.2713 0.5132 1.8598 33 1 1.5130 3.1149 -1.0786 34 1 4.2843 2.5506 -1.3992 35 1 4.3205 2.6038 -3.1780 36 1 3.3572 3.7948 -2.2714 37 1 4.2468 1.1006 -5.2586 38 1 3.6811 0.3737 -3.7315 39 1 2.2983 -1.2399 -4.9563 40 1 3.9574 -1.3129 -5.5980 41 1 1.4950 -2.1131 -7.3151 42 1 2.2552 -1.2996 -8.7039 43 1 3.7344 -2.7521 -6.4636 44 1 3.4755 -3.3752 -8.1105 45 1 4.4946 -1.9386 -7.8524 46 1 0.5722 -0.1512 -6.2029 47 1 0.9376 0.5919 -7.7791 48 1 0.6475 2.2752 -5.9167 49 1 2.2488 2.3529 -6.6978 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584122263.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:43:53 Heat of formation + Delta-G solvation = -48.376879 kcal Electronic energy + Delta-G solvation = -25841.148521 eV Core-core repulsion = 22416.253097 eV Total energy + Delta-G solvation = -3424.895424 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 297.216 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.43069 -39.46719 -38.26662 -36.07223 -35.30157 -33.17719 -32.47817 -31.38534 -30.32070 -27.87948 -27.34366 -25.55483 -25.12989 -24.75496 -22.88460 -21.82375 -21.06560 -19.95107 -19.19897 -18.06800 -17.25129 -16.68338 -16.30649 -16.17968 -16.05679 -15.78750 -15.67906 -15.59221 -15.20672 -14.86941 -14.69458 -14.32412 -14.01248 -13.85558 -13.47004 -13.36530 -13.32614 -13.05746 -12.92541 -12.82385 -12.67711 -12.58752 -12.31367 -12.20077 -12.10851 -11.97509 -11.96141 -11.88605 -11.66832 -11.66116 -10.72079 -10.65439 -10.30133 -9.83297 -9.31768 -9.10015 -8.56449 -6.25008 1.54043 1.60479 1.62063 1.79971 1.88139 2.57126 2.83842 3.22863 3.38015 3.60232 3.81994 3.89752 3.94776 4.04059 4.08283 4.18090 4.21088 4.36481 4.38314 4.42445 4.47086 4.51385 4.58778 4.59861 4.64606 4.67417 4.74115 4.76736 4.81486 4.97797 4.98826 5.00798 5.07485 5.12988 5.17345 5.30795 5.33727 5.47779 5.50757 5.66006 5.88478 5.96705 5.99148 6.10184 6.31910 6.52175 6.60668 6.79745 7.19287 7.50700 8.82001 Molecular weight = 297.22amu Principal moments of inertia in cm(-1) A = 0.024656 B = 0.003547 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.356106 B = 7892.624306 C = 8205.108535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.100 4.100 3 C 0.214 3.786 4 H -0.023 1.023 5 C -0.599 4.599 6 H 0.042 0.958 7 C -0.018 4.018 8 N -0.930 5.930 9 Si 1.107 2.893 10 H -0.277 1.277 11 H -0.278 1.278 12 H -0.283 1.283 13 N -0.665 5.665 14 C 0.069 3.931 15 H 0.097 0.903 16 C -0.162 4.162 17 C 0.526 3.474 18 O -0.569 6.569 19 N -0.615 5.615 20 C 0.107 3.893 21 C 0.035 3.965 22 N -0.538 5.538 23 C 0.049 3.951 24 C -0.154 4.154 25 C 0.049 3.951 26 C 0.116 3.884 27 H 0.043 0.957 28 H 0.040 0.960 29 H 0.040 0.960 30 H 0.036 0.964 31 H 0.037 0.963 32 H 0.261 0.739 33 H 0.335 0.665 34 H 0.058 0.942 35 H 0.088 0.912 36 H 0.053 0.947 37 H 0.096 0.904 38 H 0.090 0.910 39 H 0.022 0.978 40 H 0.116 0.884 41 H 0.026 0.974 42 H 0.087 0.913 43 H 0.056 0.944 44 H 0.071 0.929 45 H 0.067 0.933 46 H 0.020 0.980 47 H 0.106 0.894 48 H 0.075 0.925 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.930 -5.118 -21.442 22.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.138 4.138 3 C 0.105 3.895 4 H -0.005 1.005 5 C -0.638 4.638 6 H 0.060 0.940 7 C -0.217 4.217 8 N -0.568 5.568 9 Si 0.931 3.069 10 H -0.203 1.203 11 H -0.203 1.203 12 H -0.209 1.209 13 N -0.296 5.296 14 C -0.045 4.045 15 H 0.115 0.885 16 C -0.221 4.221 17 C 0.314 3.686 18 O -0.447 6.447 19 N -0.350 5.350 20 C -0.015 4.015 21 C -0.093 4.093 22 N -0.264 5.264 23 C -0.078 4.078 24 C -0.211 4.211 25 C -0.080 4.080 26 C -0.006 4.006 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.153 0.847 34 H 0.077 0.923 35 H 0.107 0.893 36 H 0.072 0.928 37 H 0.114 0.886 38 H 0.109 0.891 39 H 0.041 0.959 40 H 0.134 0.866 41 H 0.044 0.956 42 H 0.105 0.895 43 H 0.075 0.925 44 H 0.090 0.910 45 H 0.086 0.914 46 H 0.038 0.962 47 H 0.125 0.875 48 H 0.094 0.906 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.246 -4.998 -20.204 21.064 hybrid contribution 0.068 0.019 -0.783 0.786 sum 3.314 -4.979 -20.987 21.822 Atomic orbital electron populations 1.21317 0.95771 0.98781 1.00902 1.21409 0.96920 0.97580 0.97938 1.19070 0.91574 0.91895 0.86929 1.00527 1.22159 1.30829 1.17934 0.92855 0.93986 1.26850 0.95469 0.96067 1.03347 1.70888 1.21456 1.30366 1.34065 0.83041 0.75291 0.75820 0.72793 1.20255 1.20338 1.20911 1.60241 1.49645 1.15015 1.04698 1.21516 0.91946 1.01226 0.89829 0.88481 1.22284 0.97393 0.99081 1.03359 1.20865 0.84153 0.78119 0.85435 1.90619 1.25663 1.42062 1.86397 1.48257 1.31183 1.48942 1.06569 1.22205 0.87415 0.90086 1.01837 1.22734 1.01302 0.96485 0.88811 1.62096 1.28866 1.21726 1.13666 1.22175 0.97845 0.89400 0.98414 1.21928 0.97680 0.99294 1.02231 1.22419 0.90436 0.93747 1.01390 1.21709 0.98876 0.97122 0.82933 0.93832 0.94095 0.94136 0.94550 0.94418 0.92847 0.84680 0.92285 0.89330 0.92812 0.88616 0.89148 0.95935 0.86633 0.95556 0.89451 0.92464 0.90982 0.91375 0.96168 0.87536 0.90607 0.89403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.98 9.53 71.98 0.69 -4.29 16 2 C -0.10 -4.66 5.47 30.59 0.17 -4.49 16 3 C 0.21 10.48 1.75 44.17 0.08 10.56 16 4 H -0.02 -1.18 6.38 -2.39 -0.02 -1.19 16 5 C -0.60 -32.93 7.05 25.60 0.18 -32.75 16 6 H 0.04 2.38 7.72 -2.91 -0.02 2.35 16 7 C -0.02 -0.98 5.20 84.65 0.44 -0.54 16 8 N -0.93 -54.47 13.08 21.45 0.28 -54.19 16 9 Si 1.11 50.41 29.92 68.60 2.05 52.46 16 10 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 11 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 12 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 13 N -0.67 -29.28 5.00 -477.16 -2.39 -31.67 16 14 C 0.07 2.40 1.98 44.17 0.09 2.49 16 15 H 0.10 3.26 5.26 -2.38 -0.01 3.25 16 16 C -0.16 -4.90 8.99 71.98 0.65 -4.25 16 17 C 0.53 18.23 6.96 87.66 0.61 18.84 16 18 O -0.57 -24.43 15.99 -3.03 -0.05 -24.48 16 19 N -0.62 -16.04 3.00 -817.03 -2.45 -18.50 16 20 C 0.11 2.09 5.73 86.50 0.50 2.58 16 21 C 0.04 0.62 5.06 86.54 0.44 1.06 16 22 N -0.54 -9.06 4.78 -894.34 -4.27 -13.33 16 23 C 0.05 0.66 5.99 86.30 0.52 1.17 16 24 C -0.15 -1.65 9.16 71.98 0.66 -0.99 16 25 C 0.05 0.92 5.58 86.39 0.48 1.40 16 26 C 0.12 2.62 6.61 86.35 0.57 3.20 16 27 H 0.04 1.97 7.80 -2.38 -0.02 1.95 16 28 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.04 1.98 7.00 -2.39 -0.02 1.97 16 30 H 0.04 1.52 7.24 -2.39 -0.02 1.50 16 31 H 0.04 1.91 6.44 -2.39 -0.02 1.89 16 32 H 0.26 15.29 6.01 -92.71 -0.56 14.73 16 33 H 0.34 15.55 8.01 -89.70 -0.72 14.83 16 34 H 0.06 1.93 7.35 -2.39 -0.02 1.92 16 35 H 0.09 2.06 7.36 -2.39 -0.02 2.04 16 36 H 0.05 1.70 8.05 -2.39 -0.02 1.68 16 37 H 0.10 1.53 8.14 -2.38 -0.02 1.52 16 38 H 0.09 1.80 5.49 -2.39 -0.01 1.78 16 39 H 0.02 0.48 8.14 -2.39 -0.02 0.46 16 40 H 0.12 1.55 5.73 -2.39 -0.01 1.53 16 41 H 0.03 0.39 8.08 -2.38 -0.02 0.38 16 42 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.06 0.65 6.18 -2.39 -0.01 0.63 16 44 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 45 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 46 H 0.02 0.46 8.14 -2.39 -0.02 0.44 16 47 H 0.11 1.53 8.11 -2.39 -0.02 1.51 16 48 H 0.08 2.03 7.04 -2.39 -0.02 2.01 16 49 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -67.42 368.52 -0.35 -67.77 By element: Atomic # 1 Polarization: 27.54 SS G_CDS: 0.42 Total: 27.96 kcal Atomic # 6 Polarization: -12.08 SS G_CDS: 6.06 Total: -6.02 kcal Atomic # 7 Polarization: -108.86 SS G_CDS: -8.83 Total: -117.69 kcal Atomic # 8 Polarization: -24.43 SS G_CDS: -0.05 Total: -24.48 kcal Atomic # 14 Polarization: 50.41 SS G_CDS: 2.05 Total: 52.46 kcal Total: -67.42 -0.35 -67.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584122263.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.391 kcal (2) G-P(sol) polarization free energy of solvation -67.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds