Wall clock time and date at job start Fri Apr 10 2020 17:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47045 * 2 1 4 4 H 1.09000 * 109.47614 * 306.03281 * 3 2 1 5 5 C 1.50690 * 109.47465 * 186.02890 * 3 2 1 6 6 H 1.08003 * 120.00596 * 240.00220 * 5 3 2 7 7 C 1.37885 * 120.00081 * 59.99913 * 5 3 2 8 8 N 1.31512 * 119.99507 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00265 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47187 * 59.99986 * 9 7 5 11 11 H 1.48495 * 109.46917 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.46989 * 300.00015 * 9 7 5 13 13 N 1.46906 * 109.47257 * 66.02956 * 3 2 1 14 14 C 1.46901 * 111.00053 * 206.34001 * 13 3 2 15 15 H 1.08994 * 109.46810 * 325.11097 * 14 13 3 16 16 C 1.53001 * 109.47165 * 85.11253 * 14 13 3 17 17 C 1.50700 * 109.46827 * 205.11270 * 14 13 3 18 18 O 1.21284 * 119.99863 * 339.32409 * 17 14 13 19 19 N 1.34777 * 119.99796 * 159.33122 * 17 14 13 20 20 C 1.47073 * 120.88169 * 4.43666 * 19 17 14 21 21 C 1.53702 * 108.27450 * 128.75733 * 20 19 17 22 22 N 1.46898 * 109.25687 * 54.08580 * 21 20 19 23 23 C 1.46893 * 111.00324 * 172.60645 * 22 21 20 24 24 C 1.53002 * 109.47142 * 314.30142 * 23 22 21 25 25 C 1.46902 * 111.26630 * 296.75641 * 22 21 20 26 26 C 1.47083 * 120.87639 * 184.71951 * 19 17 14 27 27 H 1.09008 * 109.47123 * 183.93234 * 1 2 3 28 28 H 1.09002 * 109.47286 * 303.93174 * 1 2 3 29 29 H 1.09001 * 109.47274 * 63.93427 * 1 2 3 30 30 H 1.08995 * 109.46862 * 240.00285 * 2 1 3 31 31 H 1.08993 * 109.46963 * 120.00128 * 2 1 3 32 32 H 0.97003 * 120.00333 * 180.02562 * 8 7 5 33 33 H 1.00895 * 111.00232 * 82.38172 * 13 3 2 34 34 H 1.09000 * 109.47176 * 55.78680 * 16 14 13 35 35 H 1.09004 * 109.47205 * 175.78476 * 16 14 13 36 36 H 1.08995 * 109.47654 * 295.78919 * 16 14 13 37 37 H 1.09003 * 109.62970 * 248.52737 * 20 19 17 38 38 H 1.09000 * 109.63289 * 9.10972 * 20 19 17 39 39 H 1.08999 * 109.64921 * 294.08245 * 21 20 19 40 40 H 1.09003 * 109.41900 * 173.95021 * 21 20 19 41 41 H 1.09000 * 109.46962 * 74.29882 * 23 22 21 42 42 H 1.08994 * 109.47482 * 194.29647 * 23 22 21 43 43 H 1.09000 * 109.47522 * 179.97438 * 24 23 22 44 44 H 1.09000 * 109.46980 * 299.99729 * 24 23 22 45 45 H 1.08996 * 109.46948 * 59.99771 * 24 23 22 46 46 H 1.09000 * 109.49221 * 303.14434 * 25 22 21 47 47 H 1.08999 * 109.49499 * 183.06672 * 25 22 21 48 48 H 1.08997 * 109.63147 * 350.89489 * 26 19 17 49 49 H 1.09003 * 109.62839 * 111.47933 * 26 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5912 1.9866 -0.8310 5 6 3.5395 1.4452 -0.1492 6 1 4.1579 1.8851 0.6192 7 6 4.1221 0.8859 -1.2668 8 7 3.3691 0.3506 -2.2027 9 14 5.9810 0.8887 -1.4515 10 1 6.5920 0.1471 -0.3192 11 1 6.3522 0.2319 -2.7305 12 1 6.4763 2.2885 -1.4511 13 7 1.6727 2.0917 1.2656 14 6 1.5600 3.5467 1.0975 15 1 2.3021 3.8876 0.3757 16 6 0.1587 3.8947 0.5913 17 6 1.7987 4.2253 2.4218 18 8 1.6670 3.6029 3.4545 19 7 2.1582 5.5237 2.4586 20 6 2.2293 6.3225 1.2257 21 6 1.4196 7.6114 1.4392 22 7 1.9022 8.2920 2.6483 23 6 1.2772 9.6134 2.7936 24 6 1.3092 10.3433 1.4493 25 6 1.6815 7.4707 3.8461 26 6 2.4959 6.1776 3.7320 27 1 -0.3634 -1.0253 0.0705 28 1 -0.3634 0.5737 0.8527 29 1 -0.3634 0.4516 -0.9231 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.7789 -0.0432 -2.9888 33 1 2.3314 1.8618 1.9944 34 1 -0.5861 3.4883 1.2756 35 1 0.0503 4.9780 0.5379 36 1 0.0135 3.4657 -0.4001 37 1 3.2684 6.5707 1.0096 38 1 1.8054 5.7554 0.3970 39 1 0.3641 7.3660 1.5568 40 1 1.5474 8.2666 0.5775 41 1 0.2433 9.4927 3.1170 42 1 1.8245 10.1945 3.5357 43 1 0.8451 11.3236 1.5569 44 1 2.3431 10.4640 1.1259 45 1 0.7619 9.7621 0.7072 46 1 0.6224 7.2272 3.9301 47 1 1.9991 8.0238 4.7300 48 1 2.2485 5.5146 4.5610 49 1 3.5602 6.4123 3.7522 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584122265.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:43:58 Heat of formation + Delta-G solvation = -26.996217 kcal Electronic energy + Delta-G solvation = -25766.499275 eV Core-core repulsion = 22342.530986 eV Total energy + Delta-G solvation = -3423.968289 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 297.216 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.22027 -38.34092 -36.13342 -34.98147 -33.21365 -31.77512 -31.14951 -30.54608 -28.93424 -26.94747 -25.99704 -24.07338 -23.68685 -22.63786 -21.66249 -20.65461 -19.43434 -18.56654 -17.09379 -16.64560 -15.87806 -15.61705 -15.38356 -15.23416 -14.93270 -14.71851 -14.38646 -14.00895 -13.70529 -13.41823 -12.86038 -12.64136 -12.61707 -12.31791 -12.21148 -12.05909 -11.82844 -11.63037 -11.50030 -11.46183 -11.35437 -11.19375 -11.12542 -11.07444 -10.92284 -10.80309 -10.65263 -10.16876 -9.61837 -9.56250 -9.19322 -9.00321 -8.78644 -8.38040 -8.35649 -7.28731 -6.00697 -4.14184 2.97380 3.09033 3.27637 3.32952 3.36187 3.65054 4.38683 4.61514 4.65275 4.78637 4.85796 5.01349 5.11408 5.14710 5.18949 5.20385 5.26136 5.28391 5.38285 5.45589 5.59376 5.67123 5.70934 5.76412 5.79490 5.85858 5.88809 5.96061 6.12702 6.36450 6.43800 6.55871 6.57954 6.65683 6.75321 6.76805 6.80305 7.11804 7.22323 7.43372 7.53515 7.62986 7.77711 8.09003 8.14106 8.30749 8.48916 8.67293 8.98767 9.53706 10.98964 Molecular weight = 297.22amu Principal moments of inertia in cm(-1) A = 0.016857 B = 0.004013 C = 0.003682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.660273 B = 6975.903694 C = 7602.819423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.105 4.105 3 C 0.216 3.784 4 H 0.034 0.966 5 C -0.549 4.549 6 H 0.052 0.948 7 C 0.070 3.930 8 N -0.884 5.884 9 Si 0.888 3.112 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.278 1.278 13 N -0.669 5.669 14 C 0.076 3.924 15 H 0.068 0.932 16 C -0.132 4.132 17 C 0.519 3.481 18 O -0.533 6.533 19 N -0.620 5.620 20 C 0.109 3.891 21 C 0.034 3.966 22 N -0.539 5.539 23 C 0.051 3.949 24 C -0.158 4.158 25 C 0.044 3.956 26 C 0.116 3.884 27 H 0.024 0.976 28 H 0.050 0.950 29 H 0.035 0.965 30 H 0.091 0.909 31 H 0.031 0.969 32 H 0.262 0.738 33 H 0.338 0.662 34 H 0.061 0.939 35 H 0.046 0.954 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.097 0.903 39 H 0.039 0.961 40 H 0.094 0.906 41 H 0.032 0.968 42 H 0.075 0.925 43 H 0.059 0.941 44 H 0.065 0.935 45 H 0.059 0.941 46 H 0.038 0.962 47 H 0.084 0.916 48 H 0.094 0.906 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.940 17.568 6.132 19.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.144 4.144 3 C 0.108 3.892 4 H 0.052 0.948 5 C -0.588 4.588 6 H 0.070 0.930 7 C -0.133 4.133 8 N -0.522 5.522 9 Si 0.716 3.284 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.204 1.204 13 N -0.302 5.302 14 C -0.038 4.038 15 H 0.086 0.914 16 C -0.190 4.190 17 C 0.308 3.692 18 O -0.408 6.408 19 N -0.355 5.355 20 C -0.015 4.015 21 C -0.094 4.094 22 N -0.264 5.264 23 C -0.076 4.076 24 C -0.215 4.215 25 C -0.085 4.085 26 C -0.007 4.007 27 H 0.044 0.956 28 H 0.069 0.931 29 H 0.054 0.946 30 H 0.109 0.891 31 H 0.050 0.950 32 H 0.072 0.928 33 H 0.157 0.843 34 H 0.080 0.920 35 H 0.065 0.935 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.115 0.885 39 H 0.057 0.943 40 H 0.112 0.888 41 H 0.050 0.950 42 H 0.094 0.906 43 H 0.078 0.922 44 H 0.084 0.916 45 H 0.078 0.922 46 H 0.056 0.944 47 H 0.102 0.898 48 H 0.113 0.887 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.186 17.066 6.376 18.942 hybrid contribution 1.239 0.227 -0.196 1.275 sum -3.947 17.294 6.181 18.784 Atomic orbital electron populations 1.21719 0.98985 0.98551 1.00326 1.21472 0.92179 0.99019 1.01684 1.19221 0.92885 0.91495 0.85595 0.94783 1.21847 0.92818 1.38923 1.05185 0.93027 1.24907 0.97809 0.94865 0.95702 1.69865 1.34793 1.38268 1.09235 0.86729 0.86098 0.78217 0.77392 1.20255 1.21199 1.20399 1.60884 1.55281 1.03159 1.10832 1.21355 0.98278 0.92055 0.92102 0.91403 1.21759 0.95680 0.99237 1.02309 1.21224 0.74885 0.80772 0.92367 1.90642 1.50768 1.63881 1.35504 1.48196 1.69032 1.10487 1.07820 1.22022 1.01234 0.90980 0.87248 1.22729 0.97122 0.95574 0.93973 1.62026 1.58558 1.03018 1.02808 1.22080 0.97066 0.89936 0.98560 1.21958 1.02788 0.99923 0.96855 1.22476 0.98717 0.94233 0.93061 1.21601 0.99097 0.92584 0.87392 0.95650 0.93075 0.94582 0.89102 0.95045 0.92794 0.84282 0.91966 0.93468 0.91276 0.90609 0.88465 0.94301 0.88817 0.95017 0.90636 0.92187 0.91579 0.92164 0.94391 0.89801 0.88742 0.91072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 9.85 37.16 0.37 -2.53 16 2 C -0.10 -2.54 5.45 -26.73 -0.15 -2.68 16 3 C 0.22 5.27 1.77 -68.87 -0.12 5.15 16 4 H 0.03 0.89 7.16 -51.93 -0.37 0.52 16 5 C -0.55 -14.67 8.33 -34.44 -0.29 -14.96 16 6 H 0.05 1.40 7.72 -52.48 -0.41 0.99 16 7 C 0.07 1.89 5.29 -17.82 -0.09 1.79 16 8 N -0.88 -24.49 11.29 55.43 0.63 -23.87 16 9 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 N -0.67 -14.65 5.28 -102.18 -0.54 -15.19 16 14 C 0.08 1.42 1.96 -68.86 -0.14 1.28 16 15 H 0.07 1.33 6.59 -51.93 -0.34 0.99 16 16 C -0.13 -2.12 9.01 37.16 0.33 -1.79 16 17 C 0.52 9.39 6.79 -10.99 -0.07 9.31 16 18 O -0.53 -11.26 15.53 5.55 0.09 -11.18 16 19 N -0.62 -9.01 3.00 -172.18 -0.52 -9.53 16 20 C 0.11 1.31 5.98 -3.36 -0.02 1.29 16 21 C 0.03 0.34 5.06 -3.46 -0.02 0.33 16 22 N -0.54 -5.35 4.78 -234.02 -1.12 -6.47 16 23 C 0.05 0.41 5.99 -3.83 -0.02 0.38 16 24 C -0.16 -1.07 9.16 37.16 0.34 -0.73 16 25 C 0.04 0.45 5.58 -3.70 -0.02 0.43 16 26 C 0.12 1.47 6.61 -3.60 -0.02 1.45 16 27 H 0.02 0.48 8.14 -51.92 -0.42 0.05 16 28 H 0.05 1.05 7.68 -51.93 -0.40 0.65 16 29 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.09 2.42 5.93 -51.93 -0.31 2.12 16 31 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 33 H 0.34 7.93 7.49 -39.29 -0.29 7.64 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.05 0.62 6.65 -51.93 -0.35 0.28 16 36 H 0.07 1.16 7.51 -51.93 -0.39 0.77 16 37 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.10 1.18 4.69 -51.93 -0.24 0.94 16 39 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.09 0.79 5.73 -51.93 -0.30 0.49 16 41 H 0.03 0.26 8.08 -51.93 -0.42 -0.16 16 42 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.06 0.41 6.18 -51.93 -0.32 0.09 16 46 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 47 H 0.08 0.72 8.11 -51.93 -0.42 0.30 16 48 H 0.09 1.30 7.04 -51.93 -0.37 0.94 16 49 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 372.01 15.07 5.61 5.61 Total: -1.00 -29.52 372.01 -9.51 -39.02 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -8.71 Total: 6.91 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: 0.08 Total: -1.27 kcal Atomic # 7 Polarization: -53.51 SS G_CDS: -1.55 Total: -55.06 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: 0.09 Total: -11.18 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -29.52 -9.51 -39.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584122265.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.028 kcal (2) G-P(sol) polarization free energy of solvation -29.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds