Wall clock time and date at job start Fri Apr 10 2020 17:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.46773 * 2 1 4 4 H 1.08992 * 109.49197 * 304.40132 * 3 2 1 5 5 C 1.53054 * 109.50741 * 64.45634 * 3 2 1 6 6 N 1.46959 * 109.36496 * 178.37431 * 5 3 2 7 7 C 1.46897 * 111.00223 * 176.81304 * 6 5 3 8 8 C 1.46959 * 110.88225 * 300.68164 * 6 5 3 9 9 C 1.53048 * 109.36263 * 59.31988 * 8 6 5 10 10 N 1.46959 * 109.48665 * 184.35793 * 3 2 1 11 11 C 1.46897 * 110.99835 * 56.82198 * 10 3 2 12 12 C 1.50699 * 109.47063 * 64.32199 * 11 10 3 13 13 O 1.21286 * 120.00081 * 354.63225 * 12 11 10 14 14 N 1.34777 * 119.99974 * 174.63556 * 12 11 10 15 15 C 1.46502 * 120.00172 * 359.97438 * 14 12 11 16 16 C 1.52999 * 109.47383 * 270.00520 * 15 14 12 17 17 C 1.46504 * 119.99744 * 180.02562 * 14 12 11 18 18 C 1.50699 * 109.47351 * 89.99777 * 17 14 12 19 19 H 1.07993 * 119.99825 * 0.02562 * 18 17 14 20 20 C 1.37875 * 119.99700 * 179.97438 * 18 17 14 21 21 N 1.31507 * 120.00348 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99819 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47054 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47537 * 119.99915 * 22 20 18 25 25 H 1.48506 * 109.47092 * 240.00246 * 22 20 18 26 26 H 1.08999 * 109.47532 * 294.38231 * 1 2 3 27 27 H 1.09003 * 109.47258 * 54.37988 * 1 2 3 28 28 H 1.08998 * 109.47379 * 174.37970 * 1 2 3 29 29 H 1.08999 * 109.47382 * 240.00138 * 2 1 3 30 30 H 1.08997 * 109.46936 * 119.99327 * 2 1 3 31 31 H 1.08994 * 109.49052 * 298.34610 * 5 3 2 32 32 H 1.09003 * 109.48961 * 58.38862 * 5 3 2 33 33 H 1.09004 * 109.47285 * 59.99626 * 7 6 5 34 34 H 1.08998 * 109.47367 * 180.02562 * 7 6 5 35 35 H 1.09008 * 109.46716 * 300.00636 * 7 6 5 36 36 H 1.08997 * 109.48832 * 179.28805 * 8 6 5 37 37 H 1.08995 * 109.48778 * 299.33191 * 8 6 5 38 38 H 1.09002 * 109.49018 * 181.63187 * 9 8 6 39 39 H 1.08997 * 109.49338 * 61.56695 * 9 8 6 40 40 H 1.08997 * 109.47420 * 304.31693 * 11 10 3 41 41 H 1.09008 * 109.46676 * 184.31636 * 11 10 3 42 42 H 1.09001 * 109.46501 * 30.00126 * 15 14 12 43 43 H 1.08994 * 109.46736 * 150.00076 * 15 14 12 44 44 H 1.09000 * 109.47208 * 179.97438 * 16 15 14 45 45 H 1.09002 * 109.46632 * 299.99729 * 16 15 14 46 46 H 1.08997 * 109.47146 * 59.99731 * 16 15 14 47 47 H 1.08998 * 109.47193 * 329.99602 * 17 14 12 48 48 H 1.09004 * 109.46238 * 209.99671 * 17 14 12 49 49 H 0.97005 * 120.00156 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6138 1.9789 -0.8478 5 6 1.6237 2.1317 1.3017 6 7 2.1482 3.5045 1.3155 7 6 1.7058 4.2250 2.5168 8 6 3.6140 3.5063 1.2102 9 6 4.0301 2.8171 -0.0914 10 7 3.5057 1.4443 -0.1053 11 6 3.9481 0.7238 -1.3065 12 6 3.4632 1.4498 -2.5349 13 8 2.7323 2.4112 -2.4221 14 7 3.8416 1.0308 -3.7587 15 6 4.7248 -0.1301 -3.8948 16 6 6.1826 0.3340 -3.8837 17 6 3.3706 1.7370 -4.9527 18 6 4.3428 2.8336 -5.3041 19 1 5.2236 2.9886 -4.6988 20 6 4.1082 3.6381 -6.3989 21 7 3.0364 3.4482 -7.1369 22 14 5.3137 4.9968 -6.8349 23 1 6.4295 5.0019 -5.8550 24 1 5.8529 4.7616 -8.1985 25 1 4.6168 6.3077 -6.7975 26 1 -0.3634 0.4242 0.9360 27 1 -0.3634 0.5985 -0.8354 28 1 -0.3634 -1.0227 -0.1006 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5137 0.8900 31 1 0.5361 2.1573 1.3680 32 1 2.0269 1.5795 2.1506 33 1 2.0643 3.7049 3.4051 34 1 2.1076 5.2381 2.5014 35 1 0.6167 4.2666 2.5350 36 1 3.9773 4.5339 1.2099 37 1 4.0401 2.9702 2.0582 38 1 5.1178 2.7916 -0.1578 39 1 3.6266 3.3691 -0.9403 40 1 3.5384 -0.2862 -1.2960 41 1 5.0369 0.6741 -1.3200 42 1 4.5552 -0.8150 -3.0640 43 1 4.5128 -0.6395 -4.8348 44 1 6.8397 -0.5298 -3.9846 45 1 6.3522 1.0190 -4.7145 46 1 6.3946 0.8435 -2.9437 47 1 2.3901 2.1703 -4.7555 48 1 3.2976 1.0359 -5.7842 49 1 2.8712 4.0145 -7.9070 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584877412.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:44:04 Heat of formation + Delta-G solvation = -18.664260 kcal Electronic energy + Delta-G solvation = -26412.275317 eV Core-core repulsion = 22988.668329 eV Total energy + Delta-G solvation = -3423.606988 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 297.216 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.19532 -38.31434 -35.70325 -34.97139 -33.59404 -32.71893 -30.00284 -29.74936 -28.92211 -27.32713 -25.54315 -24.47578 -23.28853 -22.74794 -22.17083 -20.95284 -19.63316 -18.22772 -16.57916 -16.39058 -16.09794 -15.75851 -15.13455 -15.05092 -14.49571 -14.31794 -14.24791 -14.14332 -13.56115 -13.45522 -13.16609 -12.94660 -12.72325 -12.39634 -12.16085 -12.07455 -11.86775 -11.71533 -11.57839 -11.37951 -11.33720 -11.21439 -11.05274 -10.87823 -10.69993 -10.52210 -10.52122 -10.38404 -10.08964 -10.04983 -9.59532 -9.47883 -8.42294 -8.24717 -7.64850 -7.62070 -6.03070 -4.06917 3.29611 3.35806 3.38536 3.43223 3.99156 4.01918 4.09042 4.45600 4.89711 5.02807 5.13082 5.14234 5.25551 5.32171 5.35984 5.38716 5.42692 5.44919 5.50391 5.63668 5.68048 5.70104 5.72922 5.74567 5.81187 5.82889 5.85245 5.96189 6.01356 6.09205 6.14742 6.17925 6.30948 6.32152 6.52425 6.63410 6.76342 7.01867 7.09157 7.09893 7.28178 7.34020 7.46417 7.58929 7.93558 8.25768 8.44417 8.92306 9.11230 9.57941 11.05137 Molecular weight = 297.22amu Principal moments of inertia in cm(-1) A = 0.015429 B = 0.004744 C = 0.004308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.337805 B = 5900.654710 C = 6497.789562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C 0.066 3.934 4 H 0.093 0.907 5 C 0.069 3.931 6 N -0.542 5.542 7 C 0.027 3.973 8 C 0.065 3.935 9 C 0.036 3.964 10 N -0.514 5.514 11 C 0.028 3.972 12 C 0.474 3.526 13 O -0.533 6.533 14 N -0.596 5.596 15 C 0.111 3.889 16 C -0.169 4.169 17 C 0.245 3.755 18 C -0.519 4.519 19 H 0.058 0.942 20 C 0.060 3.940 21 N -0.895 5.895 22 Si 0.895 3.105 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.283 1.283 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.033 0.967 33 H 0.021 0.979 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.033 0.967 38 H 0.070 0.930 39 H 0.085 0.915 40 H 0.100 0.900 41 H 0.096 0.904 42 H 0.061 0.939 43 H 0.074 0.926 44 H 0.053 0.947 45 H 0.075 0.925 46 H 0.048 0.952 47 H 0.042 0.958 48 H 0.029 0.971 49 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.463 -7.688 16.232 17.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C -0.043 4.043 4 H 0.110 0.890 5 C -0.059 4.059 6 N -0.266 5.266 7 C -0.121 4.121 8 C -0.064 4.064 9 C -0.092 4.092 10 N -0.237 5.237 11 C -0.104 4.104 12 C 0.260 3.740 13 O -0.412 6.412 14 N -0.329 5.329 15 C -0.013 4.013 16 C -0.228 4.228 17 C 0.126 3.874 18 C -0.558 4.558 19 H 0.076 0.924 20 C -0.141 4.141 21 N -0.535 5.535 22 Si 0.723 3.277 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.209 1.209 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.051 0.949 33 H 0.039 0.961 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.052 0.948 38 H 0.088 0.912 39 H 0.103 0.897 40 H 0.118 0.882 41 H 0.114 0.886 42 H 0.079 0.921 43 H 0.092 0.908 44 H 0.072 0.928 45 H 0.094 0.906 46 H 0.067 0.933 47 H 0.060 0.940 48 H 0.047 0.953 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.017 -7.099 16.131 17.624 hybrid contribution 0.834 0.751 -0.417 1.197 sum 0.817 -6.348 15.714 16.968 Atomic orbital electron populations 1.21770 0.95601 1.01456 1.01955 1.21597 0.95765 0.96182 1.01981 1.22018 0.87824 0.95643 0.98781 0.88974 1.22170 0.99361 0.87622 0.96722 1.62059 1.10354 1.15751 1.38413 1.22325 1.00983 0.98550 0.90235 1.22103 0.87180 0.99979 0.97105 1.22412 0.99013 0.89064 0.98670 1.62651 1.10439 1.15947 1.34663 1.22401 1.01842 0.98737 0.87398 1.21581 0.81778 0.85305 0.85336 1.90599 1.37281 1.27650 1.85624 1.48427 1.46939 1.29782 1.07728 1.21379 0.90288 0.88061 1.01615 1.22222 0.96037 1.01463 1.03035 1.19267 0.96211 0.91550 0.80405 1.21453 1.07954 1.15342 1.11069 0.92384 1.24930 0.95533 0.97431 0.96247 1.69938 1.26299 1.39602 1.17617 0.86494 0.81111 0.82079 0.78033 1.19849 1.21032 1.20928 0.92832 0.92325 0.92849 0.91837 0.91829 0.90634 0.94878 0.96072 0.91528 0.91580 0.90677 0.94836 0.91189 0.89731 0.88239 0.88607 0.92064 0.90773 0.92804 0.90614 0.93319 0.94040 0.95308 0.92852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.51 37.16 0.35 -1.35 16 2 C -0.12 -1.47 5.22 -26.73 -0.14 -1.61 16 3 C 0.07 0.99 1.68 -67.65 -0.11 0.88 16 4 H 0.09 1.79 5.61 -51.93 -0.29 1.50 16 5 C 0.07 0.95 4.61 -3.76 -0.02 0.93 16 6 N -0.54 -7.80 4.97 -242.75 -1.21 -9.01 16 7 C 0.03 0.31 9.60 60.06 0.58 0.88 16 8 C 0.06 0.91 5.62 -3.77 -0.02 0.89 16 9 C 0.04 0.59 5.20 -3.77 -0.02 0.57 16 10 N -0.51 -7.85 4.73 -227.93 -1.08 -8.93 16 11 C 0.03 0.42 4.00 -4.98 -0.02 0.40 16 12 C 0.47 9.49 7.05 -10.99 -0.08 9.41 16 13 O -0.53 -12.79 11.18 5.55 0.06 -12.73 16 14 N -0.60 -12.26 2.46 -175.06 -0.43 -12.69 16 15 C 0.11 1.74 5.90 -4.04 -0.02 1.71 16 16 C -0.17 -2.54 10.19 37.16 0.38 -2.16 16 17 C 0.25 6.33 5.20 -5.19 -0.03 6.30 16 18 C -0.52 -14.49 8.92 -34.44 -0.31 -14.80 16 19 H 0.06 1.62 7.42 -52.49 -0.39 1.23 16 20 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 21 N -0.90 -26.65 13.29 55.43 0.74 -25.92 16 22 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 23 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 24 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 26 H 0.05 0.55 6.87 -51.93 -0.36 0.19 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.83 6.02 -51.93 -0.31 0.51 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.08 0.96 6.76 -51.93 -0.35 0.60 16 32 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.02 0.22 8.14 -51.93 -0.42 -0.21 16 34 H 0.07 0.70 8.13 -51.93 -0.42 0.27 16 35 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 36 H 0.07 0.98 8.13 -51.93 -0.42 0.56 16 37 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.08 1.74 5.59 -51.93 -0.29 1.45 16 40 H 0.10 1.31 5.45 -51.93 -0.28 1.03 16 41 H 0.10 1.33 6.90 -51.92 -0.36 0.97 16 42 H 0.06 0.76 6.59 -51.93 -0.34 0.42 16 43 H 0.07 1.14 7.89 -51.93 -0.41 0.73 16 44 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.07 1.37 7.25 -51.93 -0.38 1.00 16 46 H 0.05 0.72 7.13 -51.93 -0.37 0.35 16 47 H 0.04 1.22 7.42 -51.93 -0.39 0.84 16 48 H 0.03 0.76 7.89 -51.93 -0.41 0.35 16 49 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 368.31 15.07 5.55 5.55 Total: -1.00 -31.96 368.31 -9.65 -41.61 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -8.71 Total: 1.53 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: 0.44 Total: 3.68 kcal Atomic # 7 Polarization: -54.57 SS G_CDS: -1.98 Total: -56.54 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: 0.06 Total: -12.73 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.96 -9.65 -41.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584877412.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.947 kcal (2) G-P(sol) polarization free energy of solvation -31.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds