Wall clock time and date at job start Fri Apr 10 2020 17:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.46773 * 2 1 4 4 H 1.08992 * 109.49197 * 304.40132 * 3 2 1 5 5 C 1.53054 * 109.50741 * 64.45634 * 3 2 1 6 6 N 1.46959 * 109.36496 * 178.37431 * 5 3 2 7 7 C 1.46897 * 111.00223 * 176.81304 * 6 5 3 8 8 C 1.46959 * 110.88225 * 300.68164 * 6 5 3 9 9 C 1.53048 * 109.36263 * 59.31988 * 8 6 5 10 10 N 1.46959 * 109.48665 * 184.35793 * 3 2 1 11 11 C 1.46897 * 110.99835 * 56.82198 * 10 3 2 12 12 C 1.50699 * 109.47063 * 64.32199 * 11 10 3 13 13 O 1.21286 * 120.00081 * 354.63225 * 12 11 10 14 14 N 1.34777 * 119.99974 * 174.63556 * 12 11 10 15 15 C 1.46502 * 120.00172 * 359.97438 * 14 12 11 16 16 C 1.52999 * 109.47383 * 270.00520 * 15 14 12 17 17 C 1.46504 * 119.99744 * 180.02562 * 14 12 11 18 18 C 1.50699 * 109.47351 * 89.99777 * 17 14 12 19 19 H 1.07993 * 119.99825 * 0.02562 * 18 17 14 20 20 C 1.37875 * 119.99700 * 179.97438 * 18 17 14 21 21 N 1.31507 * 120.00348 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99819 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47054 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47537 * 119.99915 * 22 20 18 25 25 H 1.48506 * 109.47092 * 240.00246 * 22 20 18 26 26 H 1.08999 * 109.47532 * 294.38231 * 1 2 3 27 27 H 1.09003 * 109.47258 * 54.37988 * 1 2 3 28 28 H 1.08998 * 109.47379 * 174.37970 * 1 2 3 29 29 H 1.08999 * 109.47382 * 240.00138 * 2 1 3 30 30 H 1.08997 * 109.46936 * 119.99327 * 2 1 3 31 31 H 1.08994 * 109.49052 * 298.34610 * 5 3 2 32 32 H 1.09003 * 109.48961 * 58.38862 * 5 3 2 33 33 H 1.09004 * 109.47285 * 59.99626 * 7 6 5 34 34 H 1.08998 * 109.47367 * 180.02562 * 7 6 5 35 35 H 1.09008 * 109.46716 * 300.00636 * 7 6 5 36 36 H 1.08997 * 109.48832 * 179.28805 * 8 6 5 37 37 H 1.08995 * 109.48778 * 299.33191 * 8 6 5 38 38 H 1.09002 * 109.49018 * 181.63187 * 9 8 6 39 39 H 1.08997 * 109.49338 * 61.56695 * 9 8 6 40 40 H 1.08997 * 109.47420 * 304.31693 * 11 10 3 41 41 H 1.09008 * 109.46676 * 184.31636 * 11 10 3 42 42 H 1.09001 * 109.46501 * 30.00126 * 15 14 12 43 43 H 1.08994 * 109.46736 * 150.00076 * 15 14 12 44 44 H 1.09000 * 109.47208 * 179.97438 * 16 15 14 45 45 H 1.09002 * 109.46632 * 299.99729 * 16 15 14 46 46 H 1.08997 * 109.47146 * 59.99731 * 16 15 14 47 47 H 1.08998 * 109.47193 * 329.99602 * 17 14 12 48 48 H 1.09004 * 109.46238 * 209.99671 * 17 14 12 49 49 H 0.97005 * 120.00156 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6138 1.9789 -0.8478 5 6 1.6237 2.1317 1.3017 6 7 2.1482 3.5045 1.3155 7 6 1.7058 4.2250 2.5168 8 6 3.6140 3.5063 1.2102 9 6 4.0301 2.8171 -0.0914 10 7 3.5057 1.4443 -0.1053 11 6 3.9481 0.7238 -1.3065 12 6 3.4632 1.4498 -2.5349 13 8 2.7323 2.4112 -2.4221 14 7 3.8416 1.0308 -3.7587 15 6 4.7248 -0.1301 -3.8948 16 6 6.1826 0.3340 -3.8837 17 6 3.3706 1.7370 -4.9527 18 6 4.3428 2.8336 -5.3041 19 1 5.2236 2.9886 -4.6988 20 6 4.1082 3.6381 -6.3989 21 7 3.0364 3.4482 -7.1369 22 14 5.3137 4.9968 -6.8349 23 1 6.4295 5.0019 -5.8550 24 1 5.8529 4.7616 -8.1985 25 1 4.6168 6.3077 -6.7975 26 1 -0.3634 0.4242 0.9360 27 1 -0.3634 0.5985 -0.8354 28 1 -0.3634 -1.0227 -0.1006 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5137 0.8900 31 1 0.5361 2.1573 1.3680 32 1 2.0269 1.5795 2.1506 33 1 2.0643 3.7049 3.4051 34 1 2.1076 5.2381 2.5014 35 1 0.6167 4.2666 2.5350 36 1 3.9773 4.5339 1.2099 37 1 4.0401 2.9702 2.0582 38 1 5.1178 2.7916 -0.1578 39 1 3.6266 3.3691 -0.9403 40 1 3.5384 -0.2862 -1.2960 41 1 5.0369 0.6741 -1.3200 42 1 4.5552 -0.8150 -3.0640 43 1 4.5128 -0.6395 -4.8348 44 1 6.8397 -0.5298 -3.9846 45 1 6.3522 1.0190 -4.7145 46 1 6.3946 0.8435 -2.9437 47 1 2.3901 2.1703 -4.7555 48 1 3.2976 1.0359 -5.7842 49 1 2.8712 4.0145 -7.9070 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584877412.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:44:04 Heat of formation + Delta-G solvation = -41.906482 kcal Electronic energy + Delta-G solvation = -26413.283176 eV Core-core repulsion = 22988.668329 eV Total energy + Delta-G solvation = -3424.614846 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 297.216 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.56476 -39.67859 -37.12809 -36.30502 -34.91236 -34.64843 -31.56646 -30.96918 -30.06056 -29.01948 -26.91789 -25.53803 -24.82381 -24.18962 -23.62266 -22.03732 -20.90568 -19.72136 -18.69652 -17.91010 -17.35481 -17.07171 -16.71162 -16.25112 -16.02376 -15.70324 -15.51941 -15.44800 -14.82191 -14.60822 -14.57387 -14.32830 -14.02847 -13.79484 -13.60519 -13.36372 -13.18049 -13.02002 -12.91999 -12.76298 -12.70606 -12.58241 -12.47536 -12.45116 -12.14796 -12.08077 -11.77800 -11.72153 -11.60479 -11.47699 -11.19298 -11.07333 -10.64385 -9.37950 -9.29906 -9.03264 -8.21949 -6.35085 1.33011 1.35633 1.46768 1.84438 2.32530 2.48544 2.87194 3.00996 3.07594 3.77079 3.83118 3.99183 3.99812 4.18427 4.25048 4.31855 4.36884 4.46857 4.49082 4.51272 4.54658 4.58083 4.64397 4.65963 4.67705 4.73542 4.89215 4.93436 4.98408 5.01084 5.03232 5.03700 5.07705 5.15265 5.21904 5.24365 5.34057 5.45916 5.51185 5.62084 5.87866 5.90018 5.97518 6.08637 6.17645 6.21232 6.72400 6.85202 7.30503 7.54461 8.85247 Molecular weight = 297.22amu Principal moments of inertia in cm(-1) A = 0.015429 B = 0.004744 C = 0.004308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.337805 B = 5900.654710 C = 6497.789562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.111 4.111 3 C 0.065 3.935 4 H 0.043 0.957 5 C 0.074 3.926 6 N -0.572 5.572 7 C 0.030 3.970 8 C 0.071 3.929 9 C 0.037 3.963 10 N -0.500 5.500 11 C 0.039 3.961 12 C 0.466 3.534 13 O -0.580 6.580 14 N -0.603 5.603 15 C 0.103 3.897 16 C -0.162 4.162 17 C 0.263 3.737 18 C -0.527 4.527 19 H 0.053 0.947 20 C 0.006 3.994 21 N -0.931 5.931 22 Si 0.962 3.038 23 H -0.267 1.267 24 H -0.270 1.270 25 H -0.284 1.284 26 H 0.066 0.934 27 H 0.031 0.969 28 H 0.071 0.929 29 H 0.058 0.942 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.048 0.952 33 H 0.036 0.964 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.050 0.950 38 H 0.080 0.920 39 H 0.035 0.965 40 H 0.129 0.871 41 H 0.118 0.882 42 H 0.106 0.894 43 H 0.074 0.926 44 H 0.092 0.908 45 H 0.036 0.964 46 H 0.051 0.949 47 H -0.008 1.008 48 H 0.017 0.983 49 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.135 -9.216 18.553 20.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.149 4.149 3 C -0.043 4.043 4 H 0.061 0.939 5 C -0.054 4.054 6 N -0.297 5.297 7 C -0.118 4.118 8 C -0.058 4.058 9 C -0.091 4.091 10 N -0.222 5.222 11 C -0.092 4.092 12 C 0.254 3.746 13 O -0.461 6.461 14 N -0.335 5.335 15 C -0.019 4.019 16 C -0.220 4.220 17 C 0.141 3.859 18 C -0.566 4.566 19 H 0.072 0.928 20 C -0.193 4.193 21 N -0.571 5.571 22 Si 0.787 3.213 23 H -0.191 1.191 24 H -0.195 1.195 25 H -0.210 1.210 26 H 0.085 0.915 27 H 0.051 0.949 28 H 0.090 0.910 29 H 0.076 0.924 30 H 0.104 0.896 31 H 0.100 0.900 32 H 0.066 0.934 33 H 0.054 0.946 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.097 0.903 37 H 0.068 0.932 38 H 0.099 0.901 39 H 0.053 0.947 40 H 0.146 0.854 41 H 0.136 0.864 42 H 0.124 0.876 43 H 0.092 0.908 44 H 0.111 0.889 45 H 0.055 0.945 46 H 0.070 0.930 47 H 0.010 0.990 48 H 0.035 0.965 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.678 -8.663 18.474 20.474 hybrid contribution 0.260 1.218 -1.130 1.682 sum 1.938 -7.446 17.344 18.974 Atomic orbital electron populations 1.21745 0.94908 1.02226 1.01573 1.21574 0.96385 0.94318 1.02665 1.21988 0.87439 0.97030 0.97872 0.93913 1.22129 0.99777 0.87398 0.96056 1.62036 1.10597 1.16537 1.40520 1.22349 1.01407 0.98544 0.89496 1.22031 0.87344 1.00185 0.96193 1.22349 0.99386 0.89257 0.98126 1.62768 1.10522 1.15175 1.33777 1.22537 1.03061 0.99140 0.84450 1.22599 0.80763 0.84916 0.86315 1.90609 1.39216 1.29929 1.86371 1.48457 1.47833 1.30847 1.06393 1.21733 0.89734 0.86829 1.03585 1.22147 0.96144 1.02205 1.01545 1.18671 0.93729 0.91263 0.82258 1.21688 1.07926 1.16001 1.10972 0.92839 1.25824 0.97316 0.99888 0.96242 1.70059 1.28062 1.40811 1.18197 0.85446 0.78857 0.78587 0.78401 1.19114 1.19469 1.21034 0.91498 0.94930 0.90987 0.92378 0.89607 0.90042 0.93430 0.94567 0.91107 0.90981 0.90262 0.93215 0.90143 0.94666 0.85356 0.86383 0.87620 0.90791 0.88910 0.94463 0.92966 0.99014 0.96476 0.92606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.15 9.51 71.98 0.68 -2.46 16 2 C -0.11 -2.59 5.22 30.59 0.16 -2.43 16 3 C 0.07 1.95 1.68 44.92 0.08 2.02 16 4 H 0.04 1.75 5.61 -2.39 -0.01 1.74 16 5 C 0.07 1.92 4.61 86.31 0.40 2.32 16 6 N -0.57 -16.02 4.97 -921.93 -4.58 -20.59 16 7 C 0.03 0.61 9.60 127.69 1.23 1.84 16 8 C 0.07 1.90 5.62 86.31 0.49 2.39 16 9 C 0.04 1.20 5.20 86.31 0.45 1.65 16 10 N -0.50 -14.59 4.73 -875.02 -4.14 -18.73 16 11 C 0.04 1.12 4.00 85.56 0.34 1.46 16 12 C 0.47 19.06 7.05 87.66 0.62 19.68 16 13 O -0.58 -29.64 11.18 -3.05 -0.03 -29.68 16 14 N -0.60 -25.34 2.46 -826.14 -2.03 -27.37 16 15 C 0.10 3.08 5.90 86.38 0.51 3.59 16 16 C -0.16 -4.56 10.19 71.98 0.73 -3.83 16 17 C 0.26 14.33 5.20 85.63 0.45 14.77 16 18 C -0.53 -30.56 8.92 25.60 0.23 -30.33 16 19 H 0.05 3.08 7.42 -2.91 -0.02 3.06 16 20 C 0.01 0.33 5.46 84.66 0.46 0.80 16 21 N -0.93 -57.42 13.29 21.45 0.28 -57.13 16 22 Si 0.96 45.86 29.54 68.60 2.03 47.89 16 23 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 24 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 25 H -0.28 -13.53 7.11 99.48 0.71 -12.83 16 26 H 0.07 1.24 6.87 -2.39 -0.02 1.22 16 27 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.06 1.39 6.02 -2.39 -0.01 1.38 16 30 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.08 1.96 6.76 -2.39 -0.02 1.95 16 32 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.04 0.64 8.14 -2.38 -0.02 0.62 16 34 H 0.07 1.38 8.13 -2.39 -0.02 1.36 16 35 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 36 H 0.08 2.02 8.13 -2.39 -0.02 2.00 16 37 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 39 H 0.04 1.52 5.59 -2.39 -0.01 1.50 16 40 H 0.13 2.95 5.45 -2.39 -0.01 2.93 16 41 H 0.12 2.89 6.90 -2.38 -0.02 2.87 16 42 H 0.11 2.23 6.59 -2.39 -0.02 2.22 16 43 H 0.07 2.21 7.89 -2.39 -0.02 2.19 16 44 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 45 H 0.04 1.33 7.25 -2.39 -0.02 1.31 16 46 H 0.05 1.41 7.13 -2.39 -0.02 1.40 16 47 H -0.01 -0.53 7.42 -2.39 -0.02 -0.54 16 48 H 0.02 0.96 7.89 -2.39 -0.02 0.94 16 49 H 0.27 15.34 8.31 -92.70 -0.77 14.57 16 Total: -1.00 -75.03 368.31 -0.75 -75.78 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: 0.91 Total: 18.36 kcal Atomic # 6 Polarization: 4.66 SS G_CDS: 6.82 Total: 11.47 kcal Atomic # 7 Polarization: -113.36 SS G_CDS: -10.46 Total: -123.83 kcal Atomic # 8 Polarization: -29.64 SS G_CDS: -0.03 Total: -29.68 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.89 kcal Total: -75.03 -0.75 -75.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584877412.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.874 kcal (2) G-P(sol) polarization free energy of solvation -75.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds